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| ASPsiRNA information |
siRNA Id: | aspsirna0188
|
|
siRNA Name: | K12-L132P-18
|
| Mismatch information |
Wild siRNA (As strand 3'->5'): | GAAUUACUAUCUAAUCGAA
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|
ASP-siRNA (As strand 3'->5'): | GGAUUACUAUCUAAUCGAA
|
|
Mismatch position in siRNA: | G18A |
| Gene Information |
Gene Name | Keratin 12 (KRT12) |
|
Target Sequence (5'->3'): | TCTGGATCAGAAAAAGAAACTATGCAAAATCTTAATGATAGAT
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|
Wild allele (5'->3'): | CUUAAUGAUAGAUUAGCUU
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Mutant allele (5'->3'): | CCUAAUGAUAGAUUAGCUU
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|
Position of siRNA on target gene: | 418-436
|
| Respective Gene/Protein Resources |
GenBank Accession: | NM_000223.3 |
| Cytogenic location: | 17q21.2 |
| Chromosomal coordinates: | 17:39,017,429-39,023,461 |
| UniProt ID: | Q99456 |
| HUGO ID: | 6414 |
|
Reference SNp(RefSNP): | rs58038639 |
| Disease/Mutation information |
Target Mutation: | c.409G>C,p.Ala137Pro
|
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Matation type/variant: | Single nucleotide variant/Missense variant
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Mutation at gene level: | NG_008077.1:g.5433G>C
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Pathogenic status of mutation: | Pathogenic
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Disease: | Meesmann epithelial corneal dystrophy (MECD) |
| Clinical Resources |
ClinVar ID: | 66126 |
|
KEGG disease ID: | H00726 |
|
OMIM ID: | 122100 |
|
COSMIC: | KRT12 |
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DECIPHER: | KRT12 |
|
GeneTests: | KRT12 |
| ASP siRNA details |
Mutant allele (5'->3'): | CCUAAUGAUAGAUUAGCUU
|
|
ASP-siRNA (As strand 3'->5'): | GGAUUACUAUCUAAUCGAA
|
|
Percentage efficacy of ASP-siRNA for mutant allele: | 80
|
|
Wild allele (5'->3'): | CUUAAUGAUAGAUUAGCUU
|
|
ASP-siRNA (As strand 3'->5'): | GGAUUACUAUCUAAUCGAA
|
|
Percentage efficacy of ASP-siRNA for wild allele: | 50
|
|
Relative difference: | 30
|
| Wild siRNA details |
Wild allele (5'->3'): | CUUAAUGAUAGAUUAGCUU
|
|
Wild siRNA (As strand 3'->5'): | GAAUUACUAUCUAAUCGAA
|
|
Percentage efficacy of wild siRNA for wild allele: | 78
|
|
Wild allele (5'->3'): | CUUAAUGAUAGAUUAGCUU
|
|
ASP-siRNA (As strand 3'->5'): | GGAUUACUAUCUAAUCGAA
|
|
Percentage efficacy of Wild sirna for mutant allele: | 24
|
|
Relative difference : | 54
|
| General information |
Mismatch incorporated in siRNA/Target: | siRNA |
| Cell-line used: | Ptk2 |
| Experimental technique used: | Dual luciferase reporter assay |
| Transfection method: | Lipofectamine 2000 |
| siRNA expression method: | MWG Biotech AG |
| Post-transfection duration: | 48 hours |
| Concentration used: | 0.01–6.25nM |
| Reference: | 22174841 |
| Delivery method: | Transfection |
'| Article title: | Development of allele-specific therapeutic siRNA in Meesmann epithelial corneal dystrophy. |
'| Authors: | Liao H, Irvine AD, Macewen CJ, Weed KH, Porter L, Corden LD, Gibson AB, Moore JE, Smith FJ, McLean WH, Moore CB. |
'| Journal Reference: | PLoS One. 2011;6(12):e28582. doi: 10.1371/journal.pone.0028582. Epub 2011 Dec 12. |
'
