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| ASPsiRNA information |
siRNA Id: | aspsirna0670
|
|
siRNA Name: | P9
|
| Mismatch information |
Wild siRNA (As strand 3'->5'): | GUCGUCGUCGUCGUCGUCGUCG
|
|
ASP-siRNA (As strand 3'->5'): | GUCGUCGUUGUCGUCGUCGUCG
|
|
Mismatch position in siRNA: | U14C |
| Gene Information |
Gene Name | Hungtintin (HTT) |
|
Target Sequence (5'->3'): | CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
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|
Wild allele (5'->3'): | CAGCAGCAGCAGCAGCAGCAGC
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Mutant allele (5'->3'): | CAGCAGCAACAGCAGCAGCAGC
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|
Position of siRNA on target gene: | 368-389
|
| Respective Gene/Protein Resources |
GenBank Accession: | NM_002111.7 |
| Cytogenic location: | 4p16.3 |
| Chromosomal coordinates: | 4:3,076,407-3,245,686 |
| UniProt ID: | Q96CV9 |
| HUGO ID: | 4851 |
|
Reference SNp(RefSNP): | rs19392295 |
| Disease/Mutation information |
Target Mutation: | c.52CAG(36_39)
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Matation type/variant: | Microsatellite
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Mutation at gene level: | NG_009378.1:g.5197CAG(36_39)
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Pathogenic status of mutation: | Pathogenic
|
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Disease: | Huntington disease (HD) |
| Clinical Resources |
ClinVar ID: | 31916 |
|
KEGG disease ID: | H00059 |
|
OMIM ID: | 143100 |
|
COSMIC: | HTT |
|
DECIPHER: | HTT |
|
GeneTests: | HTT |
| ASP siRNA details |
Mutant allele (5'->3'): | CAGCAGCAACAGCAGCAGCAGC
|
|
ASP-siRNA (As strand 3'->5'): | GUCGUCGUUGUCGUCGUCGUCG
|
|
Percentage efficacy of ASP-siRNA for mutant allele: | 40
|
|
Wild allele (5'->3'): | CAGCAGCAGCAGCAGCAGCAGC
|
|
ASP-siRNA (As strand 3'->5'): | GUCGUCGUUGUCGUCGUCGUCG
|
|
Percentage efficacy of ASP-siRNA for wild allele: | 20
|
|
Relative difference: | 20
|
| Wild siRNA details |
Wild allele (5'->3'): | CAGCAGCAGCAGCAGCAGCAGC
|
|
Wild siRNA (As strand 3'->5'): | GUCGUCGUCGUCGUCGUCGUCG
|
|
Percentage efficacy of wild siRNA for wild allele: | 45
|
|
Wild allele (5'->3'): | CAGCAGCAGCAGCAGCAGCAGC
|
|
ASP-siRNA (As strand 3'->5'): | GUCGUCGUUGUCGUCGUCGUCG
|
|
Percentage efficacy of Wild sirna for mutant allele: | 82
|
|
Relative difference : | -37
|
| General information |
Mismatch incorporated in siRNA/Target: | siRNA |
| Cell-line used: | Fibroblast |
| Experimental technique used: | Western blot |
| Transfection method: | RNAiMAX |
| siRNA expression method: | Isis Pharmaceuticals |
| Post-transfection duration: | 4 days |
| Concentration used: | 3microliter |
| Reference: | 22939619 |
| Delivery method: | Transfection |
'| Article title: | Single-stranded RNAs use RNAi to potently and allele-selectively inhibit mutant huntingtin expression. |
'| Authors: | Yu D, Pendergraff H, Liu J, Kordasiewicz HB, Cleveland DW, Swayze EE, Lima WF, Crooke ST, Prakash TP, Corey DR. |
'| Journal Reference: | Cell. 2012 Aug 31;150(5):895-908. doi: 10.1016/j.cell.2012.08.002. |
'
