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| ASPsiRNA information |
siRNA Id: | aspsirna0772
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siRNA Name: | P10U
|
| Mismatch information |
Wild siRNA (As strand 3'->5'): | CCUCUGAACCCGUUACACU
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ASP-siRNA (As strand 3'->5'): | AAACCGAAUUUCAAUAUAA
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Mismatch position in siRNA: | U10C |
| Gene Information |
Gene Name | Cu,Zn superoxide dismutase (SOD1) |
|
Target Sequence (5'->3'): | TGAAGAGAGGCATGTTGGAGACTTGGGCAATGTGAC
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Wild allele (5'->3'): | GGAGACUUGGGCAAUGUGA
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Mutant allele (5'->3'): | UUUGGCUUAAAGUUAUAUU
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Position of siRNA on target gene: | 395-413
|
| Respective Gene/Protein Resources |
GenBank Accession: | NM_000454.4 |
| Cytogenic location: | 21q22.1 |
| Chromosomal coordinates: | 21:33,031,934-33,041,243 |
| UniProt ID: | P00441 |
| HUGO ID: | 11179 |
|
Reference SNp(RefSNP): | rs12191243 |
| Disease/Mutation information |
Target Mutation: | c.256G>C, p.Gly86Arg
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Matation type/variant: | Single nucleotide variant/Missense variant
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Mutation at gene level: | NG_008689.1:g.12653G>C
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Pathogenic status of mutation: | Pathogenic
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Disease: | Amyotrophic Lateral Sclerosis (ALS) |
| Clinical Resources |
ClinVar ID: | 14758 |
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KEGG disease ID: | H00058 |
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OMIM ID: | 105400 |
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COSMIC: | SOD1 |
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DECIPHER: | SOD1 |
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GeneTests: | SOD1 |
| ASP siRNA details |
Mutant allele (5'->3'): | UUUGGCUUAAAGUUAUAUU
|
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ASP-siRNA (As strand 3'->5'): | AAACCGAAUUUCAAUAUAA
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Percentage efficacy of ASP-siRNA for mutant allele: | 80
|
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Wild allele (5'->3'): | GGAGACUUGGGCAAUGUGA
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ASP-siRNA (As strand 3'->5'): | AAACCGAAUUUCAAUAUAA
|
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Percentage efficacy of ASP-siRNA for wild allele: | 35
|
|
Relative difference: | 45
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| Wild siRNA details |
Wild allele (5'->3'): | GGAGACUUGGGCAAUGUGA
|
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Wild siRNA (As strand 3'->5'): | CCUCUGAACCCGUUACACU
|
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Percentage efficacy of wild siRNA for wild allele: | NA
|
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Wild allele (5'->3'): | GGAGACUUGGGCAAUGUGA
|
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ASP-siRNA (As strand 3'->5'): | AAACCGAAUUUCAAUAUAA
|
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Percentage efficacy of Wild sirna for mutant allele: | Moderate efficacy
|
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Relative difference : | 45
|
| General information |
Mismatch incorporated in siRNA/Target: | siRNA |
| Cell-line used: | HEK293 |
| Experimental technique used: | Flourescence reporter assay |
| Transfection method: | Lipofectamine 2000 |
| siRNA expression method: | Chemically synthesized |
| Post-transfection duration: | 24 hours |
| Concentration used: | 2nM |
| Reference: | 16965178 |
| Delivery method: | Transfection |
'| Article title: | Designing siRNA that distinguish between genes that differ by a single nucleotide. |
'| Authors: | Schwarz DS, Ding H, Kennington L, Moore JT, Schelter J, Burchard J, Linsley PS, Aronin N, Xu Z, Zamore PD. |
'| Journal Reference: | PLoS Genet. 2006 Sep 8;2(9):e140. Epub 2006 Jul 24. |
'
