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| ASPsiRNA information |
siRNA Id: | aspsirna0936
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siRNA Name: | G39A shRNA
|
| Mismatch information |
Wild siRNA (As strand 3'->5'): | CUGUUUCUACCACACCGGCUA
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ASP-siRNA (As strand 3'->5'): | CUGUUUCUACGACACCGGCUA
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|
Mismatch position in siRNA: | G11C |
| Gene Information |
Gene Name | Cu,Zn superoxide dismutase (SOD1) |
|
Target Sequence (5'->3'): | GACTTGGGCAATGTGACTGCTGACAAAGAUGGUGUGGCCGAU
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Wild allele (5'->3'): | GACAAAGAUGGUGUGGCCGAU
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Mutant allele (5'->3'): | GACAAAGAUGCUGUGGCCGAU
|
|
Position of siRNA on target gene: | 419-439
|
| Respective Gene/Protein Resources |
GenBank Accession: | NM_000454.4 |
| Cytogenic location: | 21q22.11 |
| Chromosomal coordinates: | 21:33,031,934-33,041,243 |
| UniProt ID: | P00441 |
| HUGO ID: | 11179 |
|
Reference SNp(RefSNP): | rs12191243 |
| Disease/Mutation information |
Target Mutation: | c.281G>C (p.Gly94Ala)
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Matation type/variant: | Single nucleotide variant/Missense variant
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Mutation at gene level: | NG_008689.1:g.12678G>C
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Pathogenic status of mutation: | Pathogenic
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Disease: | Amyotrophic Lateral Sclerosis (ALS) |
| Clinical Resources |
ClinVar ID: | 14760 |
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KEGG disease ID: | H00058 |
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OMIM ID: | 105400 |
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COSMIC: | SOD1 |
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DECIPHER: | SOD1 |
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GeneTests: | SOD1 |
| ASP siRNA details |
Mutant allele (5'->3'): | GACAAAGAUGCUGUGGCCGAU
|
|
ASP-siRNA (As strand 3'->5'): | CUGUUUCUACGACACCGGCUA
|
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Percentage efficacy of ASP-siRNA for mutant allele: | 87
|
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Wild allele (5'->3'): | GACAAAGAUGGUGUGGCCGAU
|
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ASP-siRNA (As strand 3'->5'): | CUGUUUCUACGACACCGGCUA
|
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Percentage efficacy of ASP-siRNA for wild allele: | 20
|
|
Relative difference: | 67
|
| Wild siRNA details |
Wild allele (5'->3'): | GACAAAGAUGGUGUGGCCGAU
|
|
Wild siRNA (As strand 3'->5'): | CUGUUUCUACCACACCGGCUA
|
|
Percentage efficacy of wild siRNA for wild allele: | NA
|
|
Wild allele (5'->3'): | GACAAAGAUGGUGUGGCCGAU
|
|
ASP-siRNA (As strand 3'->5'): | CUGUUUCUACGACACCGGCUA
|
|
Percentage efficacy of Wild sirna for mutant allele: | NA
|
|
Relative difference : | NA
|
| General information |
Mismatch incorporated in siRNA/Target: | siRNA |
| Cell-line used: | HEK293 |
| Experimental technique used: | Western blot |
| Transfection method: | Lipofectamine 2000 |
| siRNA expression method: | Invitrogen |
| Post-transfection duration: | 40 hours |
| Concentration used: | 8microg |
| Reference: | 12930974 |
| Delivery method: | Transfection |
'| Article title: | An enhanced U6 promoter for synthesis of short hairpin RNA |
'| Authors: | Xia XG, Zhou H, Ding H, Affar el B, Shi Y, Xu Z |
'| Journal Reference: | Nucleic Acids Res. 2003 Sep 1;31(17):e100 |
'
