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| ASPsiRNA information |
siRNA Id: | aspsirna2049
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|
siRNA Name: | hCyclo-siRNA-u4
|
| Mismatch information |
Wild siRNA (As strand 3'->5'): | GAGAGGACAUCGAUUCCGG
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|
ASP-siRNA (As strand 3'->5'): | GAGAGGACAUCGAUUUCGG
|
|
Mismatch position in siRNA: | U4C |
| Gene Information |
Gene Name | Peptidylprolyl isomerase B (PPIB)/Cyclophilin B |
|
Target Sequence (5'->3'): | NA
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|
Wild allele (5'->3'): | CUCUCCUGUAGCUAAGGCC
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Mutant allele (5'->3'): | CUCUCCUGUAGCUAAAGCC
|
|
Position of siRNA on target gene: | NA
|
| Respective Gene/Protein Resources |
GenBank Accession: | NM_000942.4 |
| Cytogenic location: | 15q22.31 |
| Chromosomal coordinates: | 15:64,448,013-64,455,353 |
| UniProt ID: | Q13427 |
| HUGO ID: | 9253 |
|
Reference SNp(RefSNP): | NA |
| Disease/Mutation information |
Target Mutation: | NA
|
|
Matation type/variant: | NA
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Mutation at gene level: | NA
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Pathogenic status of mutation: | NA
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|
Disease: | NA |
| Clinical Resources |
ClinVar ID: | NA |
|
KEGG disease ID: | H00088 |
|
OMIM ID: | 601753 |
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COSMIC: | PPIB/Cyclophilin B |
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DECIPHER: | PPIB/Cyclophilin B |
|
GeneTests: | PPIB/Cyclophilin B |
| ASP siRNA details |
Mutant allele (5'->3'): | CUCUCCUGUAGCUAAAGCC
|
|
ASP-siRNA (As strand 3'->5'): | GAGAGGACAUCGAUUUCGG
|
|
Percentage efficacy of ASP-siRNA for mutant allele: | 62
|
|
Wild allele (5'->3'): | CUCUCCUGUAGCUAAGGCC
|
|
ASP-siRNA (As strand 3'->5'): | GAGAGGACAUCGAUUUCGG
|
|
Percentage efficacy of ASP-siRNA for wild allele: | 45
|
|
Relative difference: | 17
|
| Wild siRNA details |
Wild allele (5'->3'): | CUCUCCUGUAGCUAAGGCC
|
|
Wild siRNA (As strand 3'->5'): | GAGAGGACAUCGAUUCCGG
|
|
Percentage efficacy of wild siRNA for wild allele: | 45
|
|
Wild allele (5'->3'): | CUCUCCUGUAGCUAAGGCC
|
|
ASP-siRNA (As strand 3'->5'): | GAGAGGACAUCGAUUUCGG
|
|
Percentage efficacy of Wild sirna for mutant allele: | NA
|
|
Relative difference : | NA
|
| General information |
Mismatch incorporated in siRNA/Target: | siRNA |
| Cell-line used: | HEK293 |
| Experimental technique used: | Dual luciferase reporter assay |
| Transfection method: | Lipofectamine 2000 |
| siRNA expression method: | Dharmacon |
| Post-transfection duration: | 48 hours |
| Concentration used: | 100nM |
| Reference: | US2005/0176045A1 |
| Delivery method: | Transfection |
'| Article title: | SNP discriminatory siRNA |
'| Authors: | Yuriy Fedorov, Angela Reynolds, Anastasia Khvorova |
'| Journal Reference: | US20050176045 A1 |
'
