| | |
|---|
| ASPsiRNA information |
siRNA Id: | aspsirna2234
|
|
siRNA Name: | 556890_P8
|
| Mismatch information |
Wild siRNA (As strand 3'->5'): | GUCGUCGUCGUCGUCGUCG
|
|
ASP-siRNA (As strand 3'->5'): | AAGUCGUCGUCGUAGUCGUCU
|
|
Mismatch position in siRNA: | A8C |
| Gene Information |
Gene Name | Atrophin-1 (ATN-1) |
|
Target Sequence (5'->3'): | CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCACG
|
|
Wild allele (5'->3'): | CAGCAGCAGCAGCAGCAGC
|
|
Mutant allele (5'->3'): | UUCAGCAGCAGCAUCAGCAGU
|
|
Position of siRNA on target gene: | 1699-1717,1720-1738
|
| Respective Gene/Protein Resources |
GenBank Accession: | NM_001007026.1 |
| Cytogenic location: | 12p13.31 |
| Chromosomal coordinates: | 12:7,033,625-7,051,483 |
| UniProt ID: | P54259 |
| HUGO ID: | NA |
|
Reference SNp(RefSNP): | rs19392293 |
| Disease/Mutation information |
Target Mutation: | c.1462_1464CAG(90_93)
|
|
Matation type/variant: | STR short tandem repeat (microsatellite) variation
|
|
Mutation at gene level: | NG_008047.1:g.17267_17269CAG(90_93)
|
|
Pathogenic status of mutation: | Pathogenic
|
|
Disease: | Dentatorubral-pallidoluysian atrophy (DRPLA) |
| Clinical Resources |
ClinVar ID: | 38905 |
|
KEGG disease ID: | K05626 |
|
OMIM ID: | 125370 |
|
COSMIC: | ATN-1 |
|
DECIPHER: | ATN-1 |
|
GeneTests: | ATN-1 |
| ASP siRNA details |
Mutant allele (5'->3'): | UUCAGCAGCAGCAUCAGCAGU
|
|
ASP-siRNA (As strand 3'->5'): | AAGUCGUCGUCGUAGUCGUCU
|
|
Percentage efficacy of ASP-siRNA for mutant allele: | 70
|
|
Wild allele (5'->3'): | CAGCAGCAGCAGCAGCAGC
|
|
ASP-siRNA (As strand 3'->5'): | AAGUCGUCGUCGUAGUCGUCU
|
|
Percentage efficacy of ASP-siRNA for wild allele: | 35
|
|
Relative difference: | 35
|
| Wild siRNA details |
Wild allele (5'->3'): | CAGCAGCAGCAGCAGCAGC
|
|
Wild siRNA (As strand 3'->5'): | GUCGUCGUCGUCGUCGUCG
|
|
Percentage efficacy of wild siRNA for wild allele: | 80
|
|
Wild allele (5'->3'): | CAGCAGCAGCAGCAGCAGC
|
|
ASP-siRNA (As strand 3'->5'): | AAGUCGUCGUCGUAGUCGUCU
|
|
Percentage efficacy of Wild sirna for mutant allele: | 60
|
|
Relative difference : | 20
|
| General information |
Mismatch incorporated in siRNA/Target: | siRNA |
| Cell-line used: | Fibroblast |
| Experimental technique used: | Western blot |
| Transfection method: | RNAiMAX |
| siRNA expression method: | Isis Pharmaceuticals |
| Post-transfection duration: | 48 hours |
| Concentration used: | 50nM |
| Reference: | 24981774 |
| Delivery method: | Transfection |
'| Article title: | Allele-selective inhibition of mutant atrophin-1 expression by duplex and single-stranded RNAs. |
'| Authors: | Hu J, Liu J, Narayanannair KJ, Lackey JG, Kuchimanchi S, Rajeev KG, Manoharan M, Swayze EE, Lima WF, Prakash TP, Xiang Q, Martinez C, Corey DR |
'| Journal Reference: | Biochemistry. 2014 Jul 22;53(28):4510-8. doi: 10.1021/bi500610r. Epub 2014 Jul 11 |
'
