aspsirna2386 details

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ASPsiRNA information siRNA Id:aspsirna2386
siRNA Name: P4-N7
Mismatch information Wild siRNA (As strand 3'->5'):GUACAACCUCUGAACCCGU
ASP-siRNA (As strand 3'->5'):UGCGCAAGUCUCCAACAUG
Mismatch position in siRNA: G4C (A:G clash)
Gene Information Gene Name Cu,Zn superoxide dismutase (SOD1)
Target Sequence (5'->3'):AGGCAUGUUGGAGACUUGGGCAAUGUGACUGCUGACAAAGAUGGU
Wild allele (5'->3'):CAUGUUGGAGACUUGGGCA
Mutant allele (5'->3'):ACGCGUGCAGAGGUUGUAC
Position of siRNA on target gene: 389-407
Respective Gene/Protein Resources GenBank Accession:NM_000454.4
Cytogenic location:21q22.11
Chromosomal coordinates:21:33,031,934-33,041,243
UniProt ID:P00441
HUGO ID:11179
Reference SNp(RefSNP): rs12191243
Disease/Mutation information Target Mutation: c.256G>C,p.Gly86Arg
Matation type/variant: Single nucleotide variant/Missense variant
Mutation at gene level: NG_008689.1:g.12653G>C
Pathogenic status of mutation: Pathogenic
Disease:Amyotrophic Lateral Sclerosis (ALS)
Clinical Resources ClinVar ID:14758
KEGG disease ID:H00058
OMIM ID: 105400
COSMIC: SOD1
DECIPHER: SOD1
GeneTests: SOD1
ASP siRNA details Mutant allele (5'->3'): ACGCGUGCAGAGGUUGUAC
ASP-siRNA (As strand 3'->5'):UGCGCAAGUCUCCAACAUG
Percentage efficacy of ASP-siRNA for mutant allele:NA
Wild allele (5'->3'): CAUGUUGGAGACUUGGGCA
ASP-siRNA (As strand 3'->5'):UGCGCAAGUCUCCAACAUG
Percentage efficacy of ASP-siRNA for wild allele:NA
Relative difference:50
Wild siRNA details Wild allele (5'->3'): CAUGUUGGAGACUUGGGCA
Wild siRNA (As strand 3'->5'):GUACAACCUCUGAACCCGU
Percentage efficacy of wild siRNA for wild allele:NA
Wild allele (5'->3'): CAUGUUGGAGACUUGGGCA
ASP-siRNA (As strand 3'->5'):UGCGCAAGUCUCCAACAUG
Percentage efficacy of Wild sirna for mutant allele:NA
Relative difference :40
General information Mismatch incorporated in siRNA/Target:siRNA
Cell-line used: HeLa
Experimental technique used: Dual luciferase reporter assay
Transfection method: Lipofectamine 2000
siRNA expression method: Chemically synthesized
Post-transfection duration: 24 hours
Concentration used:20nM
Reference:US2007/0259827A1
Delivery method:Transfection
Article title:Compositions And Methods For Enhancing Discriminatory Rna Interference
Authors:Neil Aronin, Dianne Schwarz, Phillip D. Zamore
Journal Reference:US2007/0259827A1