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| ASPsiRNA information |
siRNA Id: | aspsirna3335
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siRNA Name: | miSNP50C-18-13mm
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| Mismatch information |
Wild siRNA (As strand 3'->5'): | UAGAUGACACACGUGAAGUAG
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ASP-siRNA (As strand 3'->5'): | UAGGUGACCCACGUGAAGUAG
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Mismatch position in siRNA: | G4A,C9A |
| Gene Information |
Gene Name | Hungtintin (HTT) |
|
Target Sequence (5'->3'): | TTGTGACCCACGCCTGCTCCCTCATCTACTGTGTGCACTTCAT
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Wild allele (5'->3'): | AUCUACUGUGUGCACUUCAUC
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Mutant allele (5'->3'): | AUCCACUGGGUGCACUUCAUC
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Position of siRNA on target gene: | 7244-7264
|
| Respective Gene/Protein Resources |
GenBank Accession: | NM_002111.7 |
| Cytogenic location: | 4p16.3 |
| Chromosomal coordinates: | 4:3,076,407-3,245,686 |
| UniProt ID: | Q96CV9 |
| HUGO ID: | 4851 |
|
Reference SNp(RefSNP): | rs362331 |
| Disease/Mutation information |
Target Mutation: | NM_002111.7:c.6931T>C
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Matation type/variant: | Single nucleotide variant/Missense variant
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Mutation at gene level: | NG_009378.1:g.144434T>C
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Pathogenic status of mutation: | Pathogenic
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Disease: | Huntington disease (HD) |
| Clinical Resources |
ClinVar ID: | NA |
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KEGG disease ID: | H00059 |
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OMIM ID: | 143100 |
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COSMIC: | HTT |
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DECIPHER: | HTT |
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GeneTests: | HTT |
| ASP siRNA details |
Mutant allele (5'->3'): | AUCCACUGGGUGCACUUCAUC
|
|
ASP-siRNA (As strand 3'->5'): | UAGGUGACCCACGUGAAGUAG
|
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Percentage efficacy of ASP-siRNA for mutant allele: | 75
|
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Wild allele (5'->3'): | AUCUACUGUGUGCACUUCAUC
|
|
ASP-siRNA (As strand 3'->5'): | UAGGUGACCCACGUGAAGUAG
|
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Percentage efficacy of ASP-siRNA for wild allele: | 60
|
|
Relative difference: | 15
|
| Wild siRNA details |
Wild allele (5'->3'): | AUCUACUGUGUGCACUUCAUC
|
|
Wild siRNA (As strand 3'->5'): | UAGAUGACACACGUGAAGUAG
|
|
Percentage efficacy of wild siRNA for wild allele: | 82
|
|
Wild allele (5'->3'): | AUCUACUGUGUGCACUUCAUC
|
|
ASP-siRNA (As strand 3'->5'): | UAGGUGACCCACGUGAAGUAG
|
|
Percentage efficacy of Wild sirna for mutant allele: | 80
|
|
Relative difference : | 2
|
| General information |
Mismatch incorporated in siRNA/Target: | siRNA |
| Cell-line used: | HEK293T |
| Experimental technique used: | Dual luciferase reporter assay |
| Transfection method: | Lipofectamine 2000 |
| siRNA expression method: | Chemically synthesized |
| Post-transfection duration: | 48 hours |
| Concentration used: | 50 ng |
| Reference: | 27003755 |
| Delivery method: | Transfection |
'| Article title: | Design, Characterization, and Lead Selection of Therapeutic miRNAs Targeting Huntingtin for Development of Gene Therapy for Huntington's Disease |
'| Authors: | Miniarikova J,, Zanella I, Huseinovic A, van der Zon T, Hanemaaijer E, Martier R,, Koornneef A, Southwell AL, Hayden MR, van Deventer SJ, Petry H, Konstantinova P. |
'| Journal Reference: | Mol Ther Nucleic Acids. 2016 Mar 22;5:e297. doi: 10.1038/mtna.2016.7. |
'
