VIRmiRNA -A database of viral miRNA
VMR_0299 details

miRNA Id:VMR_0299
Virus:Herpes simplex virus 1 (HSV1)
Taxonomy:View
Nomenclature:hsv1-miR-h17
miRNA Sequence: uggcgcuggggcgcgaggcgg
Length: 21
Predicted secondary structure (UNAfold):
GC Content (%):85.71
pre-miRNA:hsv1-mir-h17
pre-miRNA Sequence:ggcccacucgcacgccgccugcgcgcgcuggggccugggcgcgccgcugcggcccguguacguggcgcuggggcgcgaggcggugcgcgccggcc
Arm: 3p
Cell line: HEK293, Vero cells
Method:Solexa(NGS)
Reference: 20181707
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed