VIRmiRNA -A database of viral miRNA
VMR_0303 details

miRNA Id:VMR_0303
Virus:Herpes simplex virus 1 (HSV1)
Taxonomy:View
Nomenclature:hsv1-miR-h2-3p
miRNA Sequence: ccugagccagggacgagugcgacu
Length: 24
Predicted secondary structure (UNAfold):
GC Content (%):66.67
pre-miRNA:hsv1-mir-h2
pre-miRNA Sequence:gccaccgucgcacgcgcccggcacagacucuguucuugguucgcggccugagccagggacgagugcgacuggggc
Arm: 3p
Cell line: HEK293T, Vero cells
Method:Northern blot analysis,RT-PCR
Reference: 18596690
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed