VIRmiRNA -A database of viral miRNA
VMR_0305 details

miRNA Id:VMR_0305
Virus:Herpes simplex virus 1 (HSV1)
Taxonomy:View
Nomenclature:hsv1-miR-h3
miRNA Sequence: cugggacugugcgguugggac
Length: 21
Predicted secondary structure (UNAfold):
GC Content (%):66.67
pre-miRNA:hsv1-mir-h3
pre-miRNA Sequence:ccgcgggcgcgcuccugaccgcggguuccgaguugggcguggagguuaccugggacugugcgguugggacggcgcccgugg
Arm: 3p
Cell line: HEK293, Vero cells
Method:Solexa(NGS), RT-PCR
Reference: 20181707, 19656888, 18596690
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed