VIRmiRNA -A database of viral miRNA
VMR_0371 details

miRNA Id:VMR_0371
Virus:Herpesvirus of turkeys (HVT)
Taxonomy:View
Nomenclature:hvt-miR-h5
miRNA Sequence: gcuggugccgacgaucgccggga
Length: 23
Predicted secondary structure (UNAfold):
GC Content (%):73.91
pre-miRNA:hvt-mir-h5
pre-miRNA Sequence:ccgcuggugccgacgaucgccgggaccggcacuuucgcggcggacgagcugguaaccucugcgaucguucggugaug
Arm: 5p
Cell line: CEF, CK, CEK cells
Method:Solexa(NGS)
Reference: 19328516
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed