miRNA Id: | VMR_0394 |
Virus: | Kaposi sarcoma-associated herpesvirus (KSHV) |
Taxonomy: | View |
Nomenclature: | kshv-miR-k12-10a |
miRNA Sequence: | uaguguuguccccccgaguggc |
Length: | 22 |
Predicted secondary structure (UNAfold): | |
GC Content (%): | 63.64 |
pre-miRNA: | kshv-mir-k12-10a |
pre-miRNA Sequence: | cuggaggcuuggggcgauaccaccacucguuugucuguuggcgauuaguguuguccccccgaguggccag |
Arm: | 3p |
Cell line: | BC-1, BCBL-1, BJAB cells |
Method: | Solexa(NGS) |
Reference: | 15800047, 15782219, 15994824, 19889781, 20566670 |
BLAST (miRBase): | 8mer seed | 7mer seed |
BLAST (VIRmiRNA): | 8mer seed | 7mer seed |
Align (miRBase): | 8mer seed | 7mer seed |
Align (VIRmiRNA): | 8mer seed | 7mer seed |
Align (Human genes): | 8mer seed | 7mer seed |