VIRmiRNA -A database of viral miRNA
VMR_0394 details

miRNA Id:VMR_0394
Virus:Kaposi sarcoma-associated herpesvirus (KSHV)
Taxonomy:View
Nomenclature:kshv-miR-k12-10a
miRNA Sequence: uaguguuguccccccgaguggc
Length: 22
Predicted secondary structure (UNAfold):
GC Content (%):63.64
pre-miRNA:kshv-mir-k12-10a
pre-miRNA Sequence:cuggaggcuuggggcgauaccaccacucguuugucuguuggcgauuaguguuguccccccgaguggccag
Arm: 3p
Cell line: BC-1, BCBL-1, BJAB cells
Method:Solexa(NGS)
Reference: 15800047, 15782219, 15994824, 19889781, 20566670
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed