VIRmiRNA -A database of viral miRNA
VMR_0398 details

miRNA Id:VMR_0398
Virus:Kaposi sarcoma-associated herpesvirus (KSHV)
Taxonomy:View
Nomenclature:kshv-miR-k12-11*
miRNA Sequence: ggucacagcuuaaacauuucuagg
Length: 24
Predicted secondary structure (UNAfold):
GC Content (%):41.67
pre-miRNA:kshv-mir-k12-11
pre-miRNA Sequence:cgcuuuggucacagcuuaaacauuucuagggcgguguuaugauccuuaaugcuuagccuguguccgaugcg
Arm: 5p
Cell line: BCBL-1, BJAB cells
Method:Cloned
Reference: 15782219, 19889781, 20566670
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed