miRNA Id: | VMR_0398 |
Virus: | Kaposi sarcoma-associated herpesvirus (KSHV) |
Taxonomy: | View |
Nomenclature: | kshv-miR-k12-11* |
miRNA Sequence: | ggucacagcuuaaacauuucuagg |
Length: | 24 |
Predicted secondary structure (UNAfold): | |
GC Content (%): | 41.67 |
pre-miRNA: | kshv-mir-k12-11 |
pre-miRNA Sequence: | cgcuuuggucacagcuuaaacauuucuagggcgguguuaugauccuuaaugcuuagccuguguccgaugcg |
Arm: | 5p |
Cell line: | BCBL-1, BJAB cells |
Method: | Cloned |
Reference: | 15782219, 19889781, 20566670 |
BLAST (miRBase): | 8mer seed | 7mer seed |
BLAST (VIRmiRNA): | 8mer seed | 7mer seed |
Align (miRBase): | 8mer seed | 7mer seed |
Align (VIRmiRNA): | 8mer seed | 7mer seed |
Align (Human genes): | 8mer seed | 7mer seed |