miRNA Id: | VMR_0405 |
Virus: | Kaposi sarcoma-associated herpesvirus (KSHV) |
Taxonomy: | View |
Nomenclature: | kshv-miR-k12-3-3p |
miRNA Sequence: | ucgcggucacagaaugugaca |
Length: | 21 |
Predicted secondary structure (UNAfold): | ![]() |
GC Content (%): | 52.38 |
pre-miRNA: | kshv-mir-k12-3 |
pre-miRNA Sequence: | ggcuaucacauucugaggacggcagcgacgugugucuaacgucaacgucgcggucacagaaugugacacc |
Arm: | 3p |
Cell line: | HEK293, BJAB cells |
Method: | Northern blot analysis, RT-PCR |
Reference: | 17500590 |
BLAST (miRBase): | 8mer seed | 7mer seed |
BLAST (VIRmiRNA): | 8mer seed | 7mer seed |
Align (miRBase): | 8mer seed | 7mer seed |
Align (VIRmiRNA): | 8mer seed | 7mer seed |
Align (Human genes): | 8mer seed | 7mer seed |