VIRmiRNA -A database of viral miRNA
VMR_0411 details

miRNA Id:VMR_0411
Virus:Kaposi sarcoma-associated herpesvirus (KSHV)
Taxonomy:View
Nomenclature:kshv-miR-k12-6-5p
miRNA Sequence: ccagcagcaccuaauccaucgg
Length: 22
Predicted secondary structure (UNAfold):
GC Content (%):59.09
pre-miRNA:kshv-mir-k12-6
pre-miRNA Sequence:cuuguccagcagcaccuaauccaucggcggucgggcugaugguuuucgggcuguugagcgag
Arm: 5p
Cell line: BC-1, BCBL-1, BJAB cells
Method:Cloned
Reference: 15800047, 19889781, 20566670
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed