VIRmiRNA -A database of viral miRNA
VMR_0462 details

miRNA Id:VMR_0462
Virus:Mareks disease virus type 1 (MDV1)
Taxonomy:View
Nomenclature:mdv1-miR-m2-3p
miRNA Sequence: cggacugccgcagaauagcuu
Length: 21
Predicted secondary structure (UNAfold):
GC Content (%):57.14
pre-miRNA:mdv1-mir-m2
pre-miRNA Sequence:aaaagaaaguuguauucugcccgguaguccguuuguaaggucuuggaacggacugccgcagaauagcuuucuug
Arm: 3p
Cell line: MSBI, CU91, UA30 cells
Method:Northern blot analysis, Solexa(NGS)
Reference: 16912324, 18256158, 18842708, 24449754
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed