VIRmiRNA -A database of viral miRNA
VMR_0485 details

miRNA Id:VMR_0485
Virus:Mareks disease virus type 1 (MDV1)
Taxonomy:View
Nomenclature:mdv1-miR-m9-5p
miRNA Sequence: uuuucuccuuccccccggaguu
Length: 22
Predicted secondary structure (UNAfold):
GC Content (%):54.55
pre-miRNA:mdv1-mir-m9
pre-miRNA Sequence:gcgguuuuucuccuuccccccggaguucacuguaucguacguuguaaacuccgagggcaggaaaaagugc
Arm: 5p
Cell line: MSB-1 cells
Method:Northern blot analysis, Solexa(NGS)
Reference: 18256158, 18842708, 21645299, 24449754
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed