VIRmiRNA -A database of viral miRNA
VMR_0533 details

miRNA Id:VMR_0533
Virus:Mouse gammaherpesvirus 68 (MGHV)
Taxonomy:View
Nomenclature:mghv-miR-m1-12*
miRNA Sequence: aaggguacucucaucaccaaugu
Length: 23
Predicted secondary structure (UNAfold):
GC Content (%):43.48
pre-miRNA:mghv-mir-m1-12
pre-miRNA Sequence:guaaggguacucucaucaccaauguaaauuaauauguagcaaacuuuggugugggaguccuaccccuuuu
Arm: 5p
Cell line: S11, Ag8, NIH3T3 cells
Method:454
Reference: 20668074, 23110115
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed