miRNA Id: | VMR_0687 |
Virus: | Pseudorabies virus (PRV) |
Taxonomy: | View |
Nomenclature: | prv-miR-3-3p |
miRNA Sequence: | gcacacgccccucucgcgcac |
Length: | 21 |
Predicted secondary structure (UNAfold): | |
GC Content (%): | 76.19 |
pre-miRNA: | prv-miR-3 |
pre-miRNA Sequence: | ggugagaggcgagccgggggggucgagugggccucgcacuuuacgcgcacacgccccucucgcgcaccacacaccac |
Arm: | 3p |
Cell line: | PK-15, IB-RS-2, MDBK cells |
Method: | Deep sequencing |
Reference: | 22292087 |
BLAST (miRBase): | 8mer seed | 7mer seed |
BLAST (VIRmiRNA): | 8mer seed | 7mer seed |
Align (miRBase): | 8mer seed | 7mer seed |
Align (VIRmiRNA): | 8mer seed | 7mer seed |
Align (Human genes): | 8mer seed | 7mer seed |