VIRsiRNAdb
Database of Viral siRNA / shRNA
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BLAST Search
VIRsiRNAblast
blast your siRNA sequence against VIRsiRNAdb Database.
Enter your siRNA sequence below in
FASTA
format
eg:
>XYZ
gagacauaucuaaugugcc
Or load it from disk
Expect
0.0001
0.01
1
10
100
1000
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Perform ungapped alignment
Other advanced options:
Graphical Overview
Alignment view
Pairwise
master-slave with identities
master-slave without identities
flat master-slave with identities
flat master-slave without identities
BLAST XML
Hit Table
Descriptions
0
10
50
100
250
500
Alignments
0
10
50
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Color schema
Color schema 1
Color schema 2
Color schema 3
Color schema 4
Color schema 5
Color schema 6
No color schema