VIRsiRNAdb
Database of Viral siRNA / shRNA
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BLAST Search
siTarAlign
Align user provided siRNA sequence against selected reference genome sequences.
Select virus/family reference genome
Database
All_19_Family
Arenaviridae_52
Bunyaviridae_87
Coronaviridae_33
Filoviridae_6
Flaviviridae_53
Hepadnaviridae_8
Hepeviridae_165
Herpesviridae_46
Orthomyxoviridae_69
Papillomaviridae_90
Paramyxoviridae_33
Parvoviridae_58
Picornaviridae_63
Polyomaviridae_26
Poxviridae_27
Reoviridae_459
Rhabdoviridae_68
Togaviridae_17
BK_Polymavirus_267
Chikungunya_Virus_75
Dengue_2908
Ebolavirus_13
ENCEPHALO_17
Enterovirus_264
EBV_5
HAZARA_1
Hepatitis_A_Virus_59
Hepatitis_B_Virus_2601
Hepatitis_C_Virus_908
Hepatitis_Delta_virus_135
Hepatitis_E_Virus_164
Hepatitis_A+B+C+D+E_Virus_3866
Herpes_simplex_Virus_40
Human_Coxsackievirus_[CV]_468
Human Metapneumo_8
Human Papillomavirus_11
Human_Respiratory_Syncytial_Virus_10
Rotavirus
Human_Rhinovirus_138
Influenza_A_Virus_40
Influenza_B_Virus_3
Influenza_C_Virus_138
Japanese_Encephalitis_Virus_77
John Cunningham Virus_436
Junin_Virus_17
La_Crosse_Virus_54
Lassa_Virus_19
Marburg Virus_20
Measles_Virus_44
Nipavirus_8
Polio_153
Rabies_43
Reovirus_126
Rotavirus_3918
SARS Coronavirus_251
Sendai_Virus_21
Semliki_Forest_Virus_7
Sindbis_Virus_7
St._Louis_Encephalitis_Virus_6
Vaccinia_Virus_23
Variola_virus_49
West Nile Virus_512
Yellow_Fever_Virus_25
     
Or load your target sequences from disk         
 
Example.fasta
Select
BLAST
or
Smith-Waterman
alignment algorithm                      
Blast
Smith Waterman
Enter sequence below in
FASTA
format
eg:
>Example
acagcatattgacacctgg
Expect
0.0001
0.01
1
10
100
1000
Comments and suggestions to:<
manojk@imtech.res.in
>