VIRsiRNAdb

../../tmp/servers/virsirnadb/1253231274
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi1847	1	`aaggcacttcagagcccacca`	21
NC_009334.1	Human herpesvirus 4, complete genome	137200	`.....................`	137220	100
NC_009334.1	Human herpesvirus 4, complete genome	77614	`_____.g.a............`	77599	66
NC_009334.1	Human herpesvirus 4, complete genome	13066	`______............___`	13077	57
NC_009334.1	Human herpesvirus 4, complete genome	16136	`______............___`	16147	57
NC_009334.1	Human herpesvirus 4, complete genome	19206	`______............___`	19217	57
NC_009334.1	Human herpesvirus 4, complete genome	22276	`______............___`	22287	57
NC_009334.1	Human herpesvirus 4, complete genome	25346	`______............___`	25357	57
NC_009334.1	Human herpesvirus 4, complete genome	28416	`______............___`	28427	57
NC_009334.1	Human herpesvirus 4, complete genome	31486	`______............___`	31497	57
NC_009334.1	Human herpesvirus 4, complete genome	34556	`______............___`	34567	57
NC_009334.1	Human herpesvirus 4, complete genome	76881	`______.........._____`	76872	47
NC_009334.1	Human herpesvirus 4, complete genome	138196	`___________..........`	138205	47
NC_009334.1	Human herpesvirus 4, complete genome	153009	`___________..........`	153018	47
NC_009334.1	Human herpesvirus 4, complete genome	77499	`_______..ac........._`	77487	52
NC_009334.1	Human herpesvirus 4, complete genome	69485	`_______.c.........___`	69475	47
NC_009334.1	Human herpesvirus 4, complete genome	88103	`______.a.........____`	88113	47
NC_009334.1	Human herpesvirus 4, complete genome	60876	`______.........______`	60868	42
NC_009334.1	Human herpesvirus 4, complete genome	67967	`_________.........___`	67975	42
NC_009334.1	Human herpesvirus 4, complete genome	78079	`____________.........`	78071	42
NC_009334.1	Human herpesvirus 4, complete genome	80802	`_______........._____`	80810	42
NC_009334.1	Human herpesvirus 4, complete genome	93044	`________.........____`	93052	42
NC_009334.1	Human herpesvirus 4, complete genome	102070	`__________.........__`	102078	42
NC_009334.1	Human herpesvirus 4, complete genome	109093	`________.........____`	109085	42
NC_009334.1	Human herpesvirus 4, complete genome	113618	`___________........._`	113610	42
NC_009334.1	Human herpesvirus 4, complete genome	116532	`________.........____`	116540	42
NC_009334.1	Human herpesvirus 4, complete genome	127297	`________.........____`	127305	42
NC_009334.1	Human herpesvirus 4, complete genome	138122	`____________.........`	138130	42
NC_009334.1	Human herpesvirus 4, complete genome	147864	`____________.........`	147856	42
NC_009334.1	Human herpesvirus 4, complete genome	163747	`___________........._`	163739	42
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	77498	`_____.g.a............`	77483	66
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	13116	`______............___`	13127	57
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	16189	`______............___`	16200	57
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	19262	`______............___`	19273	57
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	22335	`______............___`	22346	57
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	25408	`______............___`	25419	57
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	28481	`______............___`	28492	57
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	31554	`______............___`	31565	57
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	34627	`______............___`	34638	57
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	76765	`______.........._____`	76756	47
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	77383	`_______..ac........._`	77371	52
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	69368	`_______.c.........___`	69358	47
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	60770	`______.........______`	60762	42
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	67850	`_________.........___`	67858	42
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	92132	`________.........____`	92140	42
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	101158	`__________.........__`	101166	42
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	112707	`___________........._`	112699	42
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	115624	`________.........____`	115632	42
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	126389	`________.........____`	126397	42

VIRsiRNAdb

Database of Viral siRNA / shRNA