VIRsiRNAdb

../../tmp/servers/virsirnadb/1957590636
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi1844	1	`aaggtgtgagcatggtgtcat`	21
M33854.1	CXA3CG Coxsackievirus B3 (CVB3) complete genome	3636	`.....................`	3656	100
M16572.1	CXA3G Coxsackievirus B3, complete genome	3635	`.....................`	3655	100
M16572.1	CXA3G Coxsackievirus B3, complete genome	2601	`___....ct..........._`	2585	71
M88483.1	CXAB3CG Coxsackievirus B3 mRNA, complete genome	3637	`.....................`	3657	100
M88483.1	CXAB3CG Coxsackievirus B3 mRNA, complete genome	2603	`___....ct..........._`	2587	71
U57056.1	CXU57056 Coxsackievirus B3 Woodruff variant, complete genome	3637	`.....................`	3657	100
U57056.1	CXU57056 Coxsackievirus B3 Woodruff variant, complete genome	2603	`___....ct..........._`	2587	71
AF231763.1	Coxsackievirus B3 strain 31-1-93, complete genome	3637	`.....................`	3657	100
AF231763.1	Coxsackievirus B3 strain 31-1-93, complete genome	2603	`___....ct..........._`	2587	71
AF231764.1	Coxsackievirus B3 strain P, complete genome	3637	`.....................`	3657	100
AF231764.1	Coxsackievirus B3 strain P, complete genome	2603	`___....ct..........._`	2587	71
AF231765.1	Coxsackievirus B3 strain PD, complete genome	3637	`.....................`	3657	100
AF231765.1	Coxsackievirus B3 strain PD, complete genome	2603	`___....ct..........._`	2587	71
AF241359.1	Enterovirus CA55-1988, complete genome	3648	`.....................`	3668	100
AY752945.1	Human coxsackievirus B3 strain 0, complete genome	3637	`.....................`	3657	100
AY752945.1	Human coxsackievirus B3 strain 0, complete genome	2603	`___....ct..........._`	2587	71
AY752946.1	Human coxsackievirus B3 strain 20, complete genome	3637	`.....................`	3657	100
AY752946.1	Human coxsackievirus B3 strain 20, complete genome	2603	`___....ct..........._`	2587	71
AY752944.2	Human coxsackievirus B3 strain 28, complete genome	3637	`.....................`	3657	100
AY752944.2	Human coxsackievirus B3 strain 28, complete genome	2603	`___....ct..........._`	2587	71
HM775882.1	Human echovirus 5 isolate Kor06-ECV5-253cn, complete genome	3666	`.....................`	3686	100
HM775882.1	Human echovirus 5 isolate Kor06-ECV5-253cn, complete genome	3322	`___.....t.........___`	3308	66
AY302552.1	Human echovirus 29 strain JV-10 complete genome	3665	`_....................`	3684	95
HM031191.1	Human echovirus 25 strain HN-2, complete genome	3666	`_....................`	3685	95
S76772.1	polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive	3633	`..................t..`	3653	95
S76772.1	polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive	1757	`__.............._____`	1744	66
AF085363.1	Coxsackievirus B2 strain Ohio-1 polyprotein gene, complete cds	3643	`.........a...........`	3663	95
AF085363.1	Coxsackievirus B2 strain Ohio-1 polyprotein gene, complete cds	2373	`______..t..........__`	2385	57
AF081485.1	Coxsackievirus B2 strain Ohio, complete genome	3643	`.........a...........`	3663	95
AF081485.1	Coxsackievirus B2 strain Ohio, complete genome	2373	`______..t..........__`	2385	57
AF311939.1	Human coxsackievirus B4 strain E2 variant, complete genome	3633	`..................t..`	3653	95
AF311939.1	Human coxsackievirus B4 strain E2 variant, complete genome	1757	`__.............._____`	1744	66
DQ902712.1	Human enterovirus 84 isolate CIV2003-10603, complete genome	3660	`...a.................`	3680	95
HM777023.1	Human echovirus 18 isolate Kor05-ECV18-054cn, complete genome	3650	`......c..............`	3670	95
X84981.1	Echovirus 9 (strain Hill), complete genome	3659	`_..a.................`	3678	90
AF029859.2	Echovirus 1 (strain Farouk / ATCC VR-1038) polyprotein precursor, gen	3636	`_.................t..`	3655	90
AY302540.1	Human echovirus 14 strain Tow complete genome	3688	`_..............g.....`	3707	90
AY302547.1	Human echovirus 21 strain Farina complete genome	3664	`_.................g..`	3683	90
AY302555.1	Human echovirus 32 strain PR-10 complete genome	3658	`_..a.................`	3677	90
AY843298.1	Human enterovirus 80 strain USA/CA67-10387, complete genome	3666	`_...........c........`	3685	90
AY843303.1	Human enterovirus 85 strain BAN00-10353, complete genome	3659	`_..............a.....`	3678	90
AY843305.1	Human enterovirus 87 strain BAN01-10396, complete genome	3660	`_...........c........`	3679	90
EF371880.2	Human enterovirus B isolate SE-03-78616, complete genome	3639	`_........a...........`	3658	90
EF371880.2	Human enterovirus B isolate SE-03-78616, complete genome	2602	`_____..tt..........._`	2588	61
AB426610.1	Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601	3664	`_..............a.....`	3683	90
AB426611.1	Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227	3650	`_..............c.....`	3669	90
AB501329.1	Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2	3648	`_.................t..`	3667	90
AB501330.1	Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2	3648	`_.................t..`	3667	90
AB501331.1	Human echovirus 13 gene for polyprotein, complete cds, strain: I5(1)-	3648	`_.................t..`	3667	90
AB501332.1	Human echovirus 13 gene for polyprotein, complete cds, strain: S3(1)-	3648	`_.................t..`	3667	90
HM185055.1	Human echovirus 6 strain Echo6/Henan/116/2008, complete genome	3657	`_.................g..`	3676	90
HM185056.1	Human enterovirus B strain EVB/Henan/127/2008, complete genome	3634	`_.................g..`	3653	90
AB192877.1	Human enterovirus 90 genomic RNA, complete genome	3681	`_.................g..`	3700	90
D00627.1	CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G	3686	`.........a..c........`	3706	90
D00627.1	CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G	2506	`_____..ac..........._`	2492	61
AY302543.1	Human echovirus 17 strain CHHE-29 complete genome	3653	`............c.....g..`	3673	90
AY843300.1	Human enterovirus 82 strain USA/CA64-10390, complete genome	3670	`............c..c.....`	3690	90
AY843306.1	Human enterovirus 88 strain BAN01-10398, complete genome	3669	`...a...........a.....`	3689	90
AY560657.1	Human poliovirus 1 strain Brunhilde, complete genome	3729	`_......c.a...........`	3748	85
AF039205.1	Coxsackievirus B6 strain Schmitt, complete genome	3636	`_.....c..a...........`	3655	85
AF105342.1	Coxsackievirus B6 strain Schmitt, complete genome	3636	`_.....c..a...........`	3655	85
AF114384.1	Coxsackievirus B6 strain Schmitt, complete genome	3635	`_.....c..a...........`	3654	85
AF524867.1	Human echovirus 9 isolate DM, complete genome	3692	`_...........c.....g..`	3711	85
AY186745.1	Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds	3609	`_...........c.....t..`	3628	85
AY186746.1	Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds	3609	`_...........c.....t..`	3628	85
AY186747.1	Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds	3609	`_...........c.....t..`	3628	85
AY186748.1	Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds	3609	`_...........c.....t..`	3628	85
AF465518.1	Human echovirus 2 strain Cornelis, complete genome	3673	`_..a..c..............`	3692	85
AY302541.1	Human echovirus 15 strain CH 96-51 complete genome	3675	`_...........c.....g..`	3694	85
AY302545.1	Human echovirus 2 strain Cornelis complete genome	3673	`_..a..c..............`	3692	85
AY302546.1	Human echovirus 20 strain JV-1 complete genome	3632	`_...........c.....t..`	3651	85
AY302553.1	Human echovirus 3 strain Morrisey complete genome	3666	`_...........c.....t..`	3685	85
AY556070.1	Enterovirus 75 strain USA/OK85-10362, complete genome	3667	`_.....c...........g..`	3686	85
AY843299.1	Human enterovirus 81 strain USA/CA68-10389, complete genome	3653	`_...........c.....t..`	3672	85
AY843308.1	Human enterovirus 101 strain CIV03-10361, complete genome	3683	`_..a...........c.....`	3702	85
AY843308.1	Human enterovirus 101 strain CIV03-10361, complete genome	2595	`_____..ct..........._`	2581	61
EF174469.1	Human coxsackievirus B2 isolate KOR 04-279, complete genome	3644	`_.....c...........g..`	3663	85
EF174469.1	Human coxsackievirus B2 isolate KOR 04-279, complete genome	2373	`______..t..........__`	2385	57
FJ172447.1	Human echovirus 4 strain AUS250G, complete genome	3633	`_..a...........a.....`	3652	85
AY697458.1	Human enterovirus 76 polyprotein gene, complete cds	3691	`_...........c..g.....`	3710	85
AY697458.1	Human enterovirus 76 polyprotein gene, complete cds	2727	`____..........a.c..__`	2741	61
AY843307.1	Human enterovirus 97 strain BAN99-10355, complete genome	3649	`.........a..c..a.....`	3669	85
EU147493.1	Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds	3630	`......c..a.........g.`	3650	85
EU147493.1	Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds	2600	`_____..tt..........._`	2586	61
AY302544.1	Human echovirus 19 strain Burke complete genome	3671	`_..............c..___`	3687	76
AY302544.1	Human echovirus 19 strain Burke complete genome	2598	`_____..ct..........._`	2584	61
AB575938.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100	3646	`_......c..........___`	3662	76
FJ914252.2	Human poliovirus 3 strain SWI10947, complete genome	3720	`_.....cc..........g..`	3739	80
U16283.1	E6U16283 Echovirus 6 lytic strain, complete genome	3655	`_..a..c..a...........`	3674	80
AJ276224.1	Human echovirus 11 genomic RNA for polyprotein	3668	`_...........c..a..t..`	3687	80
AF465517.1	Human echovirus 6 strain Charles, complete genome	3656	`_..a..c..a...........`	3675	80
AY302549.1	Human echovirus 25 strain JV-4 complete genome	3664	`_...........c..a..g..`	3683	80
AY302558.1	Human echovirus 6 strain D'Amori complete genome	3656	`_..a..c..a...........`	3675	80
AY896765.1	Human enterovirus B strain EV7-15936-01 from Azerbaijan polyprotein g	3641	`_.....c..........ct..`	3660	80
AJ849942.1	Human echovirus 3 gene for polyprotein, genomic RNA, strain PicoBank/	3665	`_..a..c...........t..`	3684	80
DQ534205.1	Human echovirus 30 isolate 14916net87, complete genome	3667	`_..a..c..a...........`	3686	80
AY697461.1	Human enterovirus 91 polyprotein gene, complete cds	3683	`_..a..c...........a..`	3702	80
AY421761.1	Human coxsackievirus A3 strain Olson, complete genome	3659	`_..a...c..........___`	3675	71
DQ341358.1	Human enterovirus 71 isolate S40221-SAR-00, complete genome	3673	`_..a...c..........___`	3689	71
DQ341360.1	Human enterovirus 71 isolate J115-MAL-01, complete genome	3672	`_.....cc..........___`	3688	71
DQ341361.1	Human enterovirus 71 isolate 1M-AUS-12-00, complete genome	3673	`_..a...c..........___`	3689	71
DQ452074.1	Human enterovirus 71 strain 804/NO/03, complete genome	3674	`_..a...c..........___`	3690	71
EU414334.1	Human enterovirus 71 strain PLday4-CH-06, complete genome	3672	`_..a...c..........___`	3688	71
EU414335.1	Human enterovirus 71 strain PLday1-CH-06, complete genome	3672	`_..a...c..........___`	3688	71
EU812514.1	Human coxsackievirus A16 strain FY18 from China, complete genome	3680	`_.....cc..........___`	3696	71
GQ279371.1	Human coxsackievirus A16 strain SZ/HK08-7, complete genome	3674	`_.....cc..........___`	3690	71
AB575937.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 141	3585	`_..a...c..........___`	3601	71
HQ269389.1	Human coxsackievirus A16 isolate XM-CA16-3560, complete genome	3675	`_.....cc..........___`	3691	71
AY302548.1	Human echovirus 24 strain DeCamp complete genome	1755	`__.....c.........____`	1741	66
X04468.1	Poliovirus type 3 strain 23127 complete genome	3720	`_..a..cc..........g..`	3739	76
AF326764.2	Simian enterovirus 46 strain OM22 (P15), complete genome	3656	`_..a..cc..........g..`	3675	76
AY896762.1	Human enterovirus B strain CBV3-11059-99 from Uzbekistan polyprotein	2583	`___....tt..........__`	2568	66
FM955278.1	Human coxsackievirus A17, complete genome, genomic RNA, isolate cCA17	1932	`_.a...ga.t.........._`	1914	71
DQ443001.1	Human coxsackievirus A24 isolate DSO-52/2005, complete genome	2275	`....g.ct.........____`	2259	66
DQ443002.1	Human coxsackievirus A24 isolate DSO-26/2005, complete genome	2275	`....g.ct.........____`	2259	66
AY896763.1	Human enterovirus B strain CBV3-18219-02 from Moldova polyprotein gen	2578	`___.c..tt..........._`	2562	66
AF328683.1	Human coxsackievirus B4 polyprotein-like gene, complete sequence	3634	`________.a...........`	3646	57
EF174468.1	Human coxsackievirus B2 isolate KOR 04-243, complete genome	2373	`______..t..........__`	2385	57
AF302996.1	Enterovirus 71 strain SHZH98 polyprotein gene, complete cds	3672	`_..a..cc.a.........g.`	3691	71
DQ133459.1	Human enterovirus 71 strain 1235 polyprotein gene, complete cds	3671	`_..a..cc.a.........g.`	3690	71
EU131776.1	Human enterovirus 71 strain N3340-TW-02, complete genome	3671	`_..a..cc.a.........g.`	3690	71
HQ188292.1	Human enterovirus 71 strain Fuyang-0805a, complete genome	3674	`_..a..cc.a.........g.`	3693	71

VIRsiRNAdb

Database of Viral siRNA / shRNA