../../tmp/servers/virsirnadb/1154364876
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1817 | 1 | acacaccgatcaacagtca | 19 | |
| M33854.1 | CXA3CG Coxsackievirus B3 (CVB3) complete genome | 120 | ................... | 138 | 100 |
| M16572.1 | CXA3G Coxsackievirus B3, complete genome | 120 | ................... | 138 | 100 |
| M88483.1 | CXAB3CG Coxsackievirus B3 mRNA, complete genome | 121 | ................... | 139 | 100 |
| AF231763.1 | Coxsackievirus B3 strain 31-1-93, complete genome | 121 | ................... | 139 | 100 |
| AF231764.1 | Coxsackievirus B3 strain P, complete genome | 121 | ................... | 139 | 100 |
| AF231765.1 | Coxsackievirus B3 strain PD, complete genome | 121 | ................... | 139 | 100 |
| AY752945.1 | Human coxsackievirus B3 strain 0, complete genome | 121 | ................... | 139 | 100 |
| AY752946.1 | Human coxsackievirus B3 strain 20, complete genome | 121 | ................... | 139 | 100 |
| AY752944.2 | Human coxsackievirus B3 strain 28, complete genome | 121 | ................... | 139 | 100 |
| AY302556.1 | Human echovirus 33 strain Toluca-3 complete genome | 122 | _.................. | 139 | 94 |
| U57056.1 | CXU57056 Coxsackievirus B3 Woodruff variant, complete genome | 121 | ....t.............. | 139 | 94 |
| AY302543.1 | Human echovirus 17 strain CHHE-29 complete genome | 122 | .................a. | 140 | 94 |
| AY302552.1 | Human echovirus 29 strain JV-10 complete genome | 121 | ...a............... | 139 | 94 |
| AY036579.1 | Human echovirus 7 strain Wallace polyprotein gene, complete cds | 121 | ................___ | 136 | 84 |
| AF465516.1 | Human echovirus 7 strain Wallace, complete genome | 121 | ................___ | 136 | 84 |
| AY302559.1 | Human echovirus 7 strain Wallace complete genome | 121 | ................___ | 136 | 84 |
| AY302546.1 | Human echovirus 20 strain JV-1 complete genome | 121 | ......t..........a. | 139 | 89 |
| X67706.1 | Coxsackievirus B5 complete genome | 124 | ......t..........__ | 140 | 84 |
| AJ849942.1 | Human echovirus 3 gene for polyprotein, genomic RNA, strain PicoBank/ | 121 | ......t..........__ | 137 | 84 |
| AY302548.1 | Human echovirus 24 strain DeCamp complete genome | 122 | _...............___ | 136 | 78 |
| AF230973.1 | AF230973 Enterovirus Yanbian 96-83csf, complete genome | 127 | _............t...__ | 142 | 78 |
| EU147493.1 | Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds | 121 | .............t..___ | 136 | 78 |
| AY421763.1 | Human coxsackievirus A5 strain Swartz, complete genome | 120 | ...t.........t...__ | 136 | 78 |
| FJ172447.1 | Human echovirus 4 strain AUS250G, complete genome | 127 | _............t..___ | 141 | 73 |
| AY302549.1 | Human echovirus 25 strain JV-4 complete genome | 121 | _..t.........t...__ | 136 | 73 |
| DQ341358.1 | Human enterovirus 71 isolate S40221-SAR-00, complete genome | 124 | ___..a...........a. | 139 | 73 |
| AB550340.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org | 124 | ___..a...........a. | 139 | 73 |
| AB550341.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS | 124 | ___..a...........a. | 139 | 73 |
| FJ357838.1 | Human coxsackievirus B3 strain GZ803, complete genome | 124 | __...a..........___ | 137 | 68 |
| AF316321.2 | Enterovirus 5865/sin/000009, complete genome | 125 | __....t.........___ | 138 | 68 |
| AF352027.1 | Enterovirus 5666/sin/002209, complete genome | 125 | __....t.........___ | 138 | 68 |
| AJ586873.1 | Human enterovirus 71 gene for polyprotein, isolate EV71/9/97/SHA89 | 125 | __....t.........___ | 138 | 68 |
| DQ341354.1 | Human enterovirus 71 isolate 3799-SIN-98, complete genome | 125 | __....t.........___ | 138 | 68 |
| DQ341355.1 | Human enterovirus 71 isolate 06-KOR-00, complete genome | 124 | ___..a...........__ | 137 | 68 |
| DQ341356.1 | Human enterovirus 71 isolate 03-KOR-00, complete genome | 124 | ___..a...........__ | 137 | 68 |
| DQ341359.1 | Human enterovirus 71 isolate S10862-SAR-98, complete genome | 124 | ___..a...........__ | 137 | 68 |
| DQ341360.1 | Human enterovirus 71 isolate J115-MAL-01, complete genome | 123 | ___..a...........__ | 136 | 68 |
| DQ341361.1 | Human enterovirus 71 isolate 1M-AUS-12-00, complete genome | 124 | ___..g...........__ | 137 | 68 |
| DQ341366.1 | Human enterovirus 71 isolate SB2864-SAR-00, complete genome | 125 | __....t.........___ | 138 | 68 |
| DQ341367.1 | Human enterovirus 71 isolate MY821-3-SAR-97, complete genome | 125 | __....t.........___ | 138 | 68 |
| DQ341368.1 | Human enterovirus 71 isolate MY104-9-SAR-97, complete genome | 125 | __....t.........___ | 138 | 68 |
| DQ452074.1 | Human enterovirus 71 strain 804/NO/03, complete genome | 125 | ___..g...........__ | 138 | 68 |
| AM396586.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 125 | __....t.........___ | 138 | 68 |
| AM396587.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate UH1/P | 125 | __....t.........___ | 138 | 68 |
| AM396588.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 116 | __....t.........___ | 129 | 68 |
| EF373575.1 | Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet | 127 | __....t.........___ | 140 | 68 |
| EU364841.1 | Human enterovirus 71 strain 26M/AUS/4/99, complete genome | 126 | __....t.........___ | 139 | 68 |
| EU376004.1 | Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome | 126 | __....t.........___ | 139 | 68 |
| EU376005.1 | Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome | 126 | __....t.........___ | 139 | 68 |
| EU414334.1 | Human enterovirus 71 strain PLday4-CH-06, complete genome | 123 | ___..a...........__ | 136 | 68 |
| EU414335.1 | Human enterovirus 71 strain PLday1-CH-06, complete genome | 123 | ___..a...........__ | 136 | 68 |
| AB469182.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E | 124 | __....t.........___ | 137 | 68 |
| AB469183.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71 | 124 | __....t.........___ | 137 | 68 |
| AB550334.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o | 124 | __....t.........___ | 137 | 68 |
| AB550335.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L | 124 | __....t.........___ | 137 | 68 |
| AB550336.1 | Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-o | 126 | __....t.........___ | 139 | 68 |
| AB550337.1 | Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-L | 126 | __....t.........___ | 139 | 68 |
| AB575927.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 113 | 61 | __....t.........___ | 74 | 68 |
| AB575928.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 115 | 62 | __....t.........___ | 75 | 68 |
| AB575937.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 141 | 36 | ___..a...........__ | 49 | 68 |
| EF555645.1 | Human enterovirus 102, complete genome | 810 | _______............ | 821 | 63 |
| D00627.1 | CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G | 3388 | ...g.gt.........a.. | 3406 | 78 |
| EF063152.1 | Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd | 125 | ____.a...........__ | 137 | 63 |
| HM107834.1 | Human poliovirus 2 isolate CHN3219, complete genome | 2003 | ...........________ | 2013 | 57 |