../../tmp/servers/virsirnadb/1172911032
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12121actgcagagagtgctgata19
AF011751.1 Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds 9559...................9577100
AF011752.1 Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds 9559...................9577100
AF011753.1 Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds 9559...................9577100
D89815.1 Hepatitis C virus genomic RNA, complete sequence 9508...................9526100
AF054247.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete9555...................9573100
AF054248.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete9555...................9573100
AF054249.1 Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete9556...................9574100
AJ238799.1 Hepatitis C virus type 1b complete genome, isolate Con1 9565...................9583100
AF176573.1 Hepatitis C virus subtype 1b strain 274933RU, complete genome 9560...................9578100
AB016785.1 Hepatitis C virus genomic RNA, complete sequence 9498...................9516100
AF271632.1 Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome 9578...................9596100
AJ278830.1 Hepatitis C virus genomic RNA for polyprotein gene 9570...................9588100
AB049088.1 Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 9576...................9594100
AB049089.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT109531...................9549100
AB049090.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149531...................9549100
AB049091.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT149507...................9525100
AB049095.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT169545...................9563100
AB049101.1 Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT229558...................9576100
AF333324.1 Hepatitis C virus type 1b polyprotein mRNA, complete cds 9547...................9565100
AF356827.1 Hepatitis C virus subtype 1b isolate HCV-S1, complete genome 9569...................9587100
AY045702.1 Hepatitis C virus isolate HCR6, complete genome 9571...................9589100
AF139594.2 Hepatitis C virus subtype 1b strain HCV-N, complete genome 9576...................9594100
AB080299.1 Hepatitis C virus genomic RNA, complete genome, isolate:M1LE 9547...................9565100
AY460204.1 Hepatitis C virus from Shanghai, complete genome 9537...................9555100
D84263.2 Hepatitis C virus (isolate VN235) genomic RNA, complete genome 9575...................9593100
AB191333.1 Hepatitis C virus genomic RNA, complete genome, strain:0 9547...................9565100
DQ071885.1 Hepatitis C virus subtype 1b polyprotein mRNA, complete cds 9565...................9583100
AB249644.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9519...................9537100
EF621489.1 Hepatitis C virus subtype 1a strain HC-TN, complete genome 9559...................9577100
AB426117.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9519...................9537100
AB435162.2 Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima 9581...................9599100
EU857431.1 Hepatitis C virus subtype 1b isolate Whu, complete genome 9563...................9581100
AB442219.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9547...................9565100
AB442220.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9547...................9565100
AB442221.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH9547...................9565100
AB442222.1 Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-9550...................9568100
FN435993.1 Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN9573...................9591100
AB520610.1 Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC9558...................9576100
GU133617.1 Hepatitis C virus subtype 1b, complete genome 9606...................9624100
D84262.2 Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC9588...................9606100
AF009606.1 Hepatitis C virus subtype 1a polyprotein gene, complete cds 9606...................9624100
D85516.1 Hepatitis C virus genomic RNA, complete cds 9495..c................951394
AJ132997.1 Hepatitis C virus, complete genome, isolate HCV-AD78P1 9493..c................951194
D84264.2 Hepatitis C virus (isolate VN405) genomic RNA, complete genome 9561.................a.957994
D84264.2 Hepatitis C virus (isolate VN405) genomic RNA, complete genome 6888.........gc.....c._690578
D84265.2 Hepatitis C virus (isolate VN004) genomic RNA, complete genome 9582.................__959889
AF169002.1 Hepatitis C virus subtype 2a isolate NDM228, complete genome 9620..............c.___963578
AF169003.1 Hepatitis C virus subtype 2a isolate G2aK1, complete genome 9653..............c.___966878
AF169004.1 Hepatitis C virus subtype 2a isolate G2aK3, complete genome 9613..............c.___962878
AF169005.1 Hepatitis C virus subtype 2a isolate NDM59, complete genome 9660..............c.___967578
AB030907.1 Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome 9614..............c.___962978
AB047639.1 Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome 9638..............c.___965378
AB047640.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 9634..............c.___964978
AB047642.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 9638..............c.___965378
AB047643.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 9601..............c.___961678
AB047644.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 9651..............c.___966678
AB047645.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 9643..............c.___965878
EU363761.1 Recombinant Hepatitis C virus H77C/JFH1, complete genome 9626..............c.___964178
AF177036.1 Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen9671..............c.___968678
AB047641.1 Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 9619..........t...c.___963473
AY746460.1 Hepatitis C virus genotype 2a polyprotein gene, complete cds 9649..........t...c.___966473
AY878650.1 Hepatitis C virus subtype 6k isolate KM45, complete genome 6871..........c...c.___688673
AY878651.1 Hepatitis C virus subtype 6k isolate KM41, complete genome 8548.t...t..........___856373
DQ278891.1 Hepatitis C virus subtype 6k isolate KM45, complete genome 6887..........c...c.___690273
DQ278893.1 Hepatitis C virus subtype 6k isolate KM41, complete genome 8580.t...t..........___859573
EU246933.1 Hepatitis C virus strain D33 polyprotein gene, complete cds 6863.........gc.....___687873
FJ462440.1 Hepatitis C virus isolate QC93, complete genome 6882..........c...a.___689773
EU408327.1 Hepatitis C virus isolate 535318 polyprotein precursor, gene, complet3824______............_381363