../../tmp/servers/virsirnadb/1301950911
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi2066 | 1 | agcagtcgggattgatact | 19 | |
| NC_004281.1 | Mammalian orthoreovirus 3 segment M3, complete sequence | 857 | ................... | 875 | 100 |
| AF174384.1 | Reovirus 3 major nonstructural protein mu-NS gene, complete cds | 860 | ................... | 878 | 100 |
| EF494440.1 | Mammalian orthoreovirus 3 strain T3D segment M3, complete sequence | 860 | ................... | 878 | 100 |
| GU589582.1 | Mammalian orthoreovirus 3 strain Abney segment M3, complete sequence | 860 | ................... | 878 | 100 |
| HM159618.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment M3, complete seq | 860 | ................... | 878 | 100 |
| GU991664.1 | Mammalian orthoreovirus 3 isolate R124 segment M3, complete sequence | 860 | ................... | 878 | 100 |
| GU991674.1 | Mammalian orthoreovirus 3 isolate Q2R segment M3, complete sequence | 860 | ................... | 878 | 100 |
| NC_004281.1 | Mammalian orthoreovirus 3 segment M3, complete sequence | 857 | ................... | 875 | 100 |
| NC_004275.1 | Mammalian orthoreovirus 3 segment L2, complete sequence | 3072 | ________.........t. | 3082 | 52 |
| NC_004276.1 | Mammalian orthoreovirus 3 segment S4, complete sequence | 107 | _________........._ | 99 | 47 |
| NC_004277.1 | Mammalian orthoreovirus 3 segment S1, complete sequence | 208 | ___........._______ | 216 | 47 |
| X61586.1 | Reovirus type 1 S4 RNA encoding sigma 3 | 107 | _________........._ | 99 | 47 |
| AF332135.1 | Orthoreovirus 3 Dearing-derived E64-adapted 1 (D-EA1) sigma 3 gene, c | 107 | _________........._ | 99 | 47 |
| AF332136.1 | Orthoreovirus 3 Dearing-derived E64-adapted 2 (D-EA2) sigma 3 gene, c | 107 | _________........._ | 99 | 47 |
| AF332137.1 | Orthoreovirus 3 Dearing-derived E64-adapted 3 (D-EA3) sigma 3 gene, c | 107 | _________........._ | 99 | 47 |
| DQ004470.1 | Mammalian orthoreovirus 3 isolate ACA-D1 outer-capsid protein sigma 3 | 107 | _________........._ | 99 | 47 |
| DQ004471.1 | Mammalian orthoreovirus 3 isolate ACA-D2 outer-capsid protein sigma 3 | 107 | _________........._ | 99 | 47 |
| DQ004472.1 | Mammalian orthoreovirus 3 isolate ACA-D3 outer-capsid protein sigma 3 | 107 | _________........._ | 99 | 47 |
| DQ004473.1 | Mammalian orthoreovirus 3 isolate ACA-D4 outer-capsid protein sigma 3 | 107 | _________........._ | 99 | 47 |
| DQ004474.1 | Mammalian orthoreovirus 3 isolate ACA-D5 outer-capsid protein sigma 3 | 107 | _________........._ | 99 | 47 |
| DQ004475.1 | Mammalian orthoreovirus 3 isolate ACA-D6 outer-capsid protein sigma 3 | 107 | _________........._ | 99 | 47 |
| EF494444.1 | Mammalian orthoreovirus 3 strain T3D segment S4, complete sequence | 107 | _________........._ | 99 | 47 |
| DQ318037.2 | Mammalian orthoreovirus 2 strain BYD1 segment S4, complete sequence | 107 | _________........._ | 99 | 47 |
| GU589586.1 | Mammalian orthoreovirus 3 strain Abney segment S4, complete sequence | 107 | _________........._ | 99 | 47 |
| HM159622.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment S4, complete seq | 107 | _________........._ | 99 | 47 |
| GU991668.1 | Mammalian orthoreovirus 3 isolate R124 segment S4, complete sequence | 107 | _________........._ | 99 | 47 |
| GU991678.1 | Mammalian orthoreovirus 3 isolate Q2R segment S4, complete sequence | 107 | _________........._ | 99 | 47 |
| NC_004276.1 | Mammalian orthoreovirus 3 segment S4, complete sequence | 107 | _________........._ | 99 | 47 |