../../tmp/servers/virsirnadb/1060782839
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1690 | 1 | atagtgacctgttgctgtg | 19 | |
| NC_001355.1 | Human papillomavirus type 6b, complete genome | 689 | ................... | 707 | 100 |
| NC_001355.1 | Human papillomavirus type 6b, complete genome | 5601 | _..a.........______ | 5612 | 57 |
| NC_013035.1 | Human papillomavirus 116, complete genome | 5693 | ..gc.............__ | 5677 | 78 |
| NC_001838.1 | Common chimpanzee papillomavirus 1, complete genome | 697 | .........a....tg.._ | 714 | 78 |
| NC_001457.1 | Human papillomavirus type 4, complete genome | 668 | ....ac..........a._ | 685 | 78 |
| NC_001457.1 | Human papillomavirus type 4, complete genome | 2901 | _________.......... | 2910 | 52 |
| NC_014953.1 | Human papillomavirus type 129, complete genome | 1967 | ...t..........a.___ | 1952 | 73 |
| NC_014953.1 | Human papillomavirus type 129, complete genome | 7156 | _____.........t..._ | 7168 | 63 |
| NC_014953.1 | Human papillomavirus type 129, complete genome | 5542 | ___.........a.t.___ | 5530 | 57 |
| NC_014953.1 | Human papillomavirus type 129, complete genome | 7061 | ______.a.g......... | 7049 | 57 |
| NC_006563.1 | Trichechus manatus latirostris papillomavirus 1, complete genome | 4249 | _____..a........... | 4236 | 68 |
| NC_006563.1 | Trichechus manatus latirostris papillomavirus 1, complete genome | 4645 | ____...........____ | 4635 | 57 |
| NC_001523.1 | Deer papillomavirus, complete genome | 6712 | ______............_ | 6701 | 63 |
| NC_001693.1 | Human papillomavirus type 60, complete genome | 662 | ....ac.........____ | 676 | 68 |
| NC_011765.1 | Erinaceus europaeus papillomavirus, complete genome | 8249 | ..........t..______ | 8237 | 63 |
| NC_014956.1 | Human papillomavirus type 134, complete genome | 5599 | ___...........t.___ | 5587 | 63 |
| NC_004500.1 | Human papillomavirus type 92, complete genome | 3619 | _______..........._ | 3609 | 57 |
| NC_008298.1 | Rousettus aegyptiacus papillomavirus type 1, complete genome | 989 | _______..........._ | 979 | 57 |
| NC_006951.1 | Erethizon dorsatum papillomavirus type 1, complete genome | 5694 | ____...........____ | 5684 | 57 |
| NC_004104.1 | Human papillomavirus type 90, complete genome | 5388 | ______...........__ | 5398 | 57 |
| NC_014835.1 | Human papillomavirus type 148, complete genome | 4588 | __..g.gg.........._ | 4603 | 68 |
| NC_001593.1 | Human papillomavirus type 53, complete genome | 7841 | _____.g..........__ | 7830 | 57 |
| NC_001593.1 | Human papillomavirus type 53, complete genome | 1287 | ______.........gt.. | 1275 | 57 |
| NC_001690.1 | Human papillomavirus type 48, complete genome | 1404 | ______..a........._ | 1393 | 57 |
| NC_008582.1 | Old World harvest mouse papillomavirus, complete genome | 5677 | ____..........t.___ | 5666 | 57 |
| NC_008582.1 | Old World harvest mouse papillomavirus, complete genome | 7078 | ________.........._ | 7069 | 52 |
| NC_012486.1 | Human papillomavirus type 112, complete genome | 809 | ______.........g.._ | 820 | 57 |
| NC_012486.1 | Human papillomavirus type 112, complete genome | 1735 | _____..ag........._ | 1747 | 57 |
| NC_014954.1 | Human papillomavirus type 131, complete genome | 5581 | _______..........a. | 5570 | 57 |
| NC_001357.1 | Human papillomavirus - 18, complete genome | 2094 | ________.........._ | 2085 | 52 |
| NC_008032.1 | Capra hircus papillomavirus type 1, complete genome | 7028 | __.........._______ | 7037 | 52 |
| NC_011280.1 | Sus scrofa papillomavirus type 1, complete genome | 68 | .........._________ | 77 | 52 |
| NC_011531.1 | Chelonia mydas papillomavirus 1, complete genome | 489 | .........._________ | 498 | 52 |
| NC_013236.1 | Canine papillomavirus 5, complete genome | 6143 | .c.........cgc...c. | 6125 | 73 |
| NC_001676.1 | Human papillomavirus 54, complete genome | 2463 | .........._________ | 2472 | 52 |
| NC_001678.1 | Rhesus monkey papillomavirus, complete genome | 5613 | ________.........._ | 5604 | 52 |
| NC_001583.1 | Human papillomavirus type 26, complete genome | 3979 | _________.......... | 3988 | 52 |
| NC_008188.1 | Human papillomavirus type 103, complete genome | 4571 | .g.t..tg.........__ | 4555 | 68 |
| NC_010817.1 | Bandicoot papillomatosis carcinomatosis virus type 2, complete genome | 2766 | ..gt.c.........a.__ | 2750 | 68 |
| NC_001524.1 | European elk papillomavirus, complete genome | 4125 | __.a.........tg..__ | 4111 | 63 |
| NC_001619.1 | Canine oral papillomavirus, complete genome | 762 | .a.........ca..____ | 748 | 63 |