VIRsiRNAdb

../../tmp/servers/virsirnadb/1245224128
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi1973	1	`ccaaatacatcatggcatg`	19
D90208.1	HPCJCG Hepatitis C virus ORF gene, complete cds	5254	`...................`	5272	100
M84754.1	HPCGENANTI Hepatitis C virus subtype 1b strain Taiwan, complete genome	5266	`...................`	5284	100
M58335.1	HPCHUMR Hepatitis C virus subtype 1b, complete genome	5257	`...................`	5275	100
S62220.1	Hepatitis C virus subtype 1b, complete genome	5265	`...................`	5283	100
D10934.1	HPCRNA Hepatitis C virus RNA, complete genome sequence	5266	`...................`	5284	100
D50485.1	HPCK1S2 Hepatitis C virus (strain HCV-1b, clone HCV-K1-S2), complete g	5254	`...................`	5272	100
D50481.1	HPCK1R2 Hepatitis C virus (strain HCV-1b, clone HCV-K1-R2), complete g	5254	`...................`	5272	100
D85516.1	Hepatitis C virus genomic RNA, complete cds	5266	`...................`	5284	100
AJ000009.1	Hepatitis C virus complete genome sequence	5249	`...................`	5267	100
D89815.1	Hepatitis C virus genomic RNA, complete sequence	5266	`...................`	5284	100
AJ132997.1	Hepatitis C virus, complete genome, isolate HCV-AD78P1	5265	`...................`	5283	100
AJ238799.1	Hepatitis C virus type 1b complete genome, isolate Con1	5266	`...................`	5284	100
AF176573.1	Hepatitis C virus subtype 1b strain 274933RU, complete genome	5266	`...................`	5284	100
AJ238800.1	Hepatitis C virus type 1b complete genome, isolate NC1	4925	`...................`	4943	100
AF165047.1	Hepatitis C virus subtype 1b strain MD2-1, complete genome	5254	`...................`	5272	100
AF165048.1	Hepatitis C virus subtype 1b strain MD2-2, complete genome	5254	`...................`	5272	100
AF208024.1	Hepatitis C virus subtype 1b strain MD34, complete genome	5248	`...................`	5266	100
AF207752.1	Hepatitis C virus subtype 1b strain MD11, complete genome	5254	`...................`	5272	100
AF207754.1	Hepatitis C virus subtype 1b strain MD13, complete genome	5254	`...................`	5272	100
AF207755.1	Hepatitis C virus subtype 1b strain MD14, complete genome	5254	`...................`	5272	100
AF207756.1	Hepatitis C virus subtype 1b strain MD15, complete genome	5254	`...................`	5272	100
AF207758.1	Hepatitis C virus subtype 1b strain MD17, complete genome	5254	`...................`	5272	100
AF207760.1	Hepatitis C virus subtype 1b strain MD19, complete genome	5254	`...................`	5272	100
AF207764.1	Hepatitis C virus subtype 1b strain MD23, complete genome	5254	`...................`	5272	100
AF207766.1	Hepatitis C virus subtype 1b strain MD25, complete genome	5254	`...................`	5272	100
AF207769.1	Hepatitis C virus subtype 1b strain MD28, complete genome	5254	`...................`	5272	100
AF207773.1	Hepatitis C virus subtype 1b strain MD32, complete genome	5254	`...................`	5272	100
AF207774.1	Hepatitis C virus subtype 1b strain MD33, complete genome	5254	`...................`	5272	100
AB049088.1	Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094	5266	`...................`	5284	100
AB049090.1	Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14	5235	`...................`	5253	100
AB049091.1	Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14	5184	`...................`	5202	100
AB049093.1	Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT15	5235	`...................`	5253	100
AB049097.1	Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT19	5235	`...................`	5253	100
AB049100.1	Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT21	5235	`...................`	5253	100
AF333324.1	Hepatitis C virus type 1b polyprotein mRNA, complete cds	5266	`...................`	5284	100
AF483269.1	Hepatitis C virus type 1b isolate HCV-TR1 from Turkey, complete genom	5231	`...................`	5249	100
AF139594.2	Hepatitis C virus subtype 1b strain HCV-N, complete genome	5269	`...................`	5287	100
AB080299.1	Hepatitis C virus genomic RNA, complete genome, isolate:M1LE	5266	`...................`	5284	100
AY460204.1	Hepatitis C virus from Shanghai, complete genome	5266	`...................`	5284	100
DQ071885.1	Hepatitis C virus subtype 1b polyprotein mRNA, complete cds	5266	`...................`	5284	100
EF032892.1	Hepatitis C virus subtype 1b isolate BR1427_P1_10.7.03 polyprotein ge	5242	`...................`	5260	100
EF032893.1	Hepatitis C virus subtype 1b isolate BR1427_P3_11.10.03 polyprotein g	5240	`...................`	5258	100
AB249644.1	Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima	5266	`...................`	5284	100
EF638081.1	Hepatitis C virus subtype 1b from Hubei, complete genome	5222	`...................`	5240	100
EF407461.1	Hepatitis C virus isolate 5004 polyprotein gene, complete cds	5246	`...................`	5264	100
EF407469.1	Hepatitis C virus isolate 4014 polyprotein gene, complete cds	5210	`...................`	5228	100
EF407471.1	Hepatitis C virus isolate 5044 polyprotein gene, complete cds	5211	`...................`	5229	100
EF407472.1	Hepatitis C virus isolate 4034 polyprotein gene, complete cds	5212	`...................`	5230	100
EF407475.1	Hepatitis C virus isolate 3009 polyprotein gene, complete cds	5198	`...................`	5216	100
EF407476.1	Hepatitis C virus isolate 3012 polyprotein gene, complete cds	5201	`...................`	5219	100
EF407479.1	Hepatitis C virus isolate 4036 polyprotein gene, complete cds	5217	`...................`	5235	100
EF407480.1	Hepatitis C virus isolate 3043 polyprotein gene, complete cds	5213	`...................`	5231	100
EF407485.1	Hepatitis C virus isolate 7026 polyprotein gene, complete cds	5221	`...................`	5239	100
EF407487.1	Hepatitis C virus isolate 6057 polyprotein gene, complete cds	5213	`...................`	5231	100
EF407488.1	Hepatitis C virus isolate 8016 polyprotein gene, complete cds	5210	`...................`	5228	100
EF407492.1	Hepatitis C virus isolate 7025 polyprotein gene, complete cds	5206	`...................`	5224	100
EF407493.1	Hepatitis C virus isolate 3031 polyprotein gene, complete cds	5221	`...................`	5239	100
EF407497.1	Hepatitis C virus isolate 5002 polyprotein gene, complete cds	5210	`...................`	5228	100
EF407501.1	Hepatitis C virus isolate 7055 polyprotein gene, complete cds	5239	`...................`	5257	100
EF407503.1	Hepatitis C virus isolate 5083 polyprotein gene, complete cds	5213	`...................`	5231	100
EU239714.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V417/2001, complet	5215	`...................`	5233	100
EU234061.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V126/1991, complet	5214	`...................`	5232	100
EU234062.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V135/1992, complet	5214	`...................`	5232	100
EU155217.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V142/2004, complet	5214	`...................`	5232	100
EU155220.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V147/2004, complet	5200	`...................`	5218	100
EU155222.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V150/2004, complet	5214	`...................`	5232	100
EU155223.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V151/2002, complet	5220	`...................`	5238	100
EU155224.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V152/2003, complet	5214	`...................`	5232	100
EU155227.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V157/2003, complet	5214	`...................`	5232	100
EU155228.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V158/2003, complet	5214	`...................`	5232	100
EU155230.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V160/2002, complet	5214	`...................`	5232	100
EU155231.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V163/2002, complet	5214	`...................`	5232	100
EU482839.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V370/2006, complet	5214	`...................`	5232	100
EU482849.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V138/1989, complet	5214	`...................`	5232	100
EU482860.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V302/2003, complet	5214	`...................`	5232	100
EU482874.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V287/2005, complet	5217	`...................`	5235	100
EU482877.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V342/2001, complet	5220	`...................`	5238	100
EU482880.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V373/2006, complet	5217	`...................`	5235	100
EU482881.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V383/2003, complet	5223	`...................`	5241	100
EU482886.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V458/2006, complet	5218	`...................`	5236	100
EU482888.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V123/1992, complet	5217	`...................`	5235	100
EU155255.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V366/2006, complet	5220	`...................`	5238	100
EU155257.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V369/2006, complet	5214	`...................`	5232	100
EU155258.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V371/2006, complet	5214	`...................`	5232	100
EU155259.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V374/2006, complet	5214	`...................`	5232	100
EU155260.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V375/2006, complet	5214	`...................`	5232	100
EU155261.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V379/2005, complet	5215	`...................`	5233	100
EU155264.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V385/2006, complet	5192	`...................`	5210	100
EU155279.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V441/2001, complet	5214	`...................`	5232	100
EU155280.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V442/2001, complet	5214	`...................`	5232	100
EU155281.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V512/2005, complet	5214	`...................`	5232	100
EU155300.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V341/2003, complet	5213	`...................`	5231	100
EU155305.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V350/2002, complet	5214	`...................`	5232	100
EU155306.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V352/2002, complet	5214	`...................`	5232	100
EU155307.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V353/2002, complet	5215	`...................`	5233	100
EU155308.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V354/2003, complet	5214	`...................`	5232	100
EU155315.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V416/2001, complet	5214	`...................`	5232	100
EU155316.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V419/2002, complet	5214	`...................`	5232	100
EU155318.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V421/2005, complet	5214	`...................`	5232	100
EU155324.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V121/1992, complet	5214	`...................`	5232	100
EU155325.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V122/1991, complet	5214	`...................`	5232	100
EU155327.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V125/1992, complet	5204	`...................`	5222	100
EU155328.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V127/1992, complet	5214	`...................`	5232	100
EU155329.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V128/1992, complet	5214	`...................`	5232	100
EU155330.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V130/1994, complet	5236	`...................`	5254	100
EU155331.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V131/1990, complet	5214	`...................`	5232	100
EU155332.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V132/1996, complet	5214	`...................`	5232	100
EU155334.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V134/1990, complet	5214	`...................`	5232	100
EU155337.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V141/1990, complet	5214	`...................`	5232	100
EU155356.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V273/2003, complet	5214	`...................`	5232	100
EU155363.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V285/2005, complet	5214	`...................`	5232	100
EU155364.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V288/2006, complet	5214	`...................`	5232	100
EU155365.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V289/2006, complet	5214	`...................`	5232	100
EU155366.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V294/2002, complet	5214	`...................`	5232	100
EU155367.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V295/2002, complet	5214	`...................`	5232	100
EU155368.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V296/2001, complet	5214	`...................`	5232	100
EU155369.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V297/2002, complet	5214	`...................`	5232	100
EU155373.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V307/2005, complet	5214	`...................`	5232	100
EU155374.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V308/2005, complet	5236	`...................`	5254	100
EU155375.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V309/2006, complet	5214	`...................`	5232	100
EU155376.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V311/2006, complet	5214	`...................`	5232	100
EU155377.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V313/2006, complet	5214	`...................`	5232	100
EU155381.2	Hepatitis C virus subtype 1b isolate HCV-1b/DE/BID-V502/2004, complet	5214	`...................`	5232	100
EU155382.2	Hepatitis C virus subtype 1b isolate HCV-1b/DE/BID-V504/2003, complet	5220	`...................`	5238	100
AB426117.1	Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima	5266	`...................`	5284	100
EU529682.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V291/2002, complet	4932	`...................`	4950	100
AB435162.2	Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima	5266	`...................`	5284	100
EU660388.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V154/2001, complet	5215	`...................`	5233	100
AB429050.1	Hepatitis C virus gene for polyprotein, complete cds, isolate: AH1	5266	`...................`	5284	100
EU255960.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V312/2006, complet	5214	`...................`	5232	100
EU256061.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V364/2006, complet	5214	`...................`	5232	100
EU256062.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V368/2006, complet	5217	`...................`	5235	100
EU256064.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V376/2006, complet	5214	`...................`	5232	100
EU256089.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V161/2002, complet	5214	`...................`	5232	100
EU256092.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V463/2006, complet	5214	`...................`	5232	100
EU256100.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V349/2002, complet	5214	`...................`	5232	100
EU256103.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V418/2001, complet	5211	`...................`	5229	100
EU256003.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V444/2006, complet	5199	`...................`	5217	100
EU256045.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V380/2003, complet	5214	`...................`	5232	100
EU256054.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V443/2001, complet	5214	`...................`	5232	100
EU256075.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V279/2004, complet	5214	`...................`	5232	100
EU256076.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V280/2004, complet	5214	`...................`	5232	100
EU256077.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V283/2005, complet	5214	`...................`	5232	100
EU256078.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V284/2005, complet	5216	`...................`	5234	100
EU256080.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V292/2002, complet	5214	`...................`	5232	100
EU256081.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V293/2002, complet	5214	`...................`	5232	100
EU256083.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V299/2005, complet	5214	`...................`	5232	100
EU256084.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V303/2003, complet	5220	`...................`	5238	100
EU256085.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V305/2003, complet	5214	`...................`	5232	100
EU255962.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V140/1991, complet	4932	`...................`	4950	100
FJ024279.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1715/2007, comple	5214	`...................`	5232	100
FJ390396.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1748/2007, comple	5214	`...................`	5232	100
FJ390398.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1750/2008, comple	5214	`...................`	5232	100
FJ478453.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V2148/1999, comple	5214	`...................`	5232	100
AB442220.1	Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH	5266	`...................`	5284	100
FJ025854.1	Hepatitis C virus strain P026 polyprotein gene, complete cds	5115	`...................`	5133	100
FJ025855.1	Hepatitis C virus strain P212 polyprotein gene, complete cds	5115	`...................`	5133	100
FJ025856.1	Hepatitis C virus strain P245 polyprotein gene, complete cds	5115	`...................`	5133	100
FJ839870.1	Hepatitis C virus isolate QC274, complete genome	5262	`...................`	5280	100
FN435993.1	Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN	5267	`...................`	5285	100
EU155357.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V275/2003, complet	5215	`_..................`	5232	94
EU155372.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V306/2004, complet	5215	`_..................`	5232	94
X61596.1	Hepatitis C virus core, E1, NS1/E2, NS2, NS3, NS4a, NS4b and NS5 gene	5249	`......t............`	5267	94
D10749.1	HPCHCJ1 Hepatitis C virus genomic RNA, complete genome, isolate: HC-J1	5266	`..............a....`	5284	94
D13558.1	HPCJ483 Hepatitis C virus genome, complete sequence	5266	`.t.................`	5284	94
D10750.1	HPCJ491 Hepatitis C virus genome, complete sequence	5266	`.t.................`	5284	94
D11168.1	HPCJTA Hepatitis C virus (HCV) complete genome	5266	`......t............`	5284	94
D11355.1	HPCJTB Hepatitis C virus genomic RNA, complete genome, strain: JT'	5266	`......t............`	5284	94
M67463.1	HPCCGAA Hepatitis C virus subtype 1a, complete genome	5266	`..............a....`	5284	94
M62321.1	HPCPLYPRE Hepatitis C virus subtype 1a, complete genome	5266	`..............a....`	5284	94
X76918.1	Hepatitis C virus genes for core, envelope and NS1 proteins	5241	`.a.................`	5259	94
D50483.1	HPCK1S1 Hepatitis C virus (strain HCV-1b, clone HCV-K1-S1), complete g	5254	`..............a....`	5272	94
D50480.1	HPCK1R1 Hepatitis C virus (strain HCV-1b, clone HCV-K1-R1), complete g	5254	`..............a....`	5272	94
D14484.1	HPCJRNA Hepatitis C virus strain J33 genomic RNA, complete genome	5266	`......t............`	5284	94
AF011751.1	Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds	5266	`..............a....`	5284	94
AF011752.1	Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds	5266	`..............a....`	5284	94
AF011753.1	Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds	5266	`..............a....`	5284	94
AF054247.1	Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete	5266	`.t.................`	5284	94
AF054248.1	Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete	5266	`.t.................`	5284	94
AF054249.1	Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete	5267	`.t.................`	5285	94
AF054250.1	Hepatitis C virus subtype 1b strain HC-J4, complete genome	5256	`.t.................`	5274	94
AJ132996.1	Hepatitis C virus, complete genome, isolate HCV-AD78	5271	`....g..............`	5289	94
AB016785.1	Hepatitis C virus genomic RNA, complete sequence	5270	`..............a....`	5288	94
AF165045.1	Hepatitis C virus subtype 1b strain MD1-1, complete genome	5254	`......t............`	5272	94
AF165046.1	Hepatitis C virus subtype 1b strain MD1-2, complete genome	5254	`......t............`	5272	94
AF165049.1	Hepatitis C virus subtype 1b strain MD3-1, complete genome	5254	`..............a....`	5272	94
AF165050.1	Hepatitis C virus subtype 1b strain MD3-2, complete genome	5254	`..............a....`	5272	94
AF165051.1	Hepatitis C virus subtype 1b strain MD4-1, complete genome	5254	`......t............`	5272	94
AF165052.1	Hepatitis C virus subtype 1b strain MD4-2, complete genome	5254	`......t............`	5272	94
AF165053.1	Hepatitis C virus subtype 1b strain MD5-1, complete genome	5254	`..............a....`	5272	94
AF165054.1	Hepatitis C virus subtype 1b strain MD5-2, complete genome	5254	`..............a....`	5272	94
AF165055.1	Hepatitis C virus subtype 1b strain MD6-1, complete genome	5263	`......t............`	5281	94
AF165056.1	Hepatitis C virus subtype 1b strain MD6-2, complete genome	5263	`......t............`	5281	94
AF165059.1	Hepatitis C virus subtype 1b strain MD8-1, complete genome	5254	`......t............`	5272	94
AF165060.1	Hepatitis C virus subtype 1b strain MD8-2, complete genome	5254	`......t............`	5272	94
AF207753.1	Hepatitis C virus subtype 1b strain MD12, complete genome	5254	`..............a....`	5272	94
AF207757.1	Hepatitis C virus subtype 1b strain MD16, complete genome	5254	`......t............`	5272	94
AF207759.1	Hepatitis C virus subtype 1b strain MD18, complete genome	5254	`......t............`	5272	94
AF207761.1	Hepatitis C virus subtype 1b strain MD20, complete genome	5254	`....g..............`	5272	94
AF207762.1	Hepatitis C virus subtype 1b strain MD21, complete genome	5254	`..............a....`	5272	94
AF207763.1	Hepatitis C virus subtype 1b strain MD22, complete genome	5254	`..............a....`	5272	94
AF207765.1	Hepatitis C virus subtype 1b strain MD24, complete genome	5254	`..............a....`	5272	94
AF207768.1	Hepatitis C virus subtype 1b strain MD27, complete genome	5254	`..............a....`	5272	94
AF207770.1	Hepatitis C virus subtype 1b strain MD29, complete genome	5254	`......t............`	5272	94
AF207771.1	Hepatitis C virus subtype 1b strain MD30, complete genome	5254	`..............a....`	5272	94
AF207772.1	Hepatitis C virus subtype 1b strain MD31, complete genome	5254	`..............a....`	5272	94
AF271632.1	Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome	5266	`..............a....`	5284	94
AF290978.1	Hepatitis C virus subtype 1a isolate colonel, complete genome	5254	`..............a....`	5272	94
AB049087.1	Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT05	5235	`......t............`	5253	94
AB049092.1	Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14	5235	`..............a....`	5253	94
AB049096.1	Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT19	5235	`......t............`	5253	94
AB049098.1	Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT20	5235	`....g..............`	5253	94
AB049101.1	Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT22	5235	`.......t...........`	5253	94
AF356827.1	Hepatitis C virus subtype 1b isolate HCV-S1, complete genome	5266	`.a.................`	5284	94
AY045702.1	Hepatitis C virus isolate HCR6, complete genome	5268	`......t............`	5286	94
AF511948.1	Hepatitis C virus isolate XF222 polyprotein-like gene, complete seque	5266	`..............a....`	5284	94
AF511949.1	Hepatitis C virus isolate XF223 polyprotein-like gene, complete seque	5267	`..............a....`	5285	94
AB154177.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154178.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154179.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154180.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154183.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154189.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154190.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154191.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154199.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154200.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154201.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154202.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154203.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154204.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154205.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB154206.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`......t............`	5272	94
AB191333.1	Hepatitis C virus genomic RNA, complete genome, strain:0	5266	`......t............`	5284	94
AJ851228.1	Hepatitis C virus gene for polyprotein, genomic RNA, isolate Equatori	5242	`................c..`	5260	94
DQ418783.1	Hepatitis C virus subtype 4a isolate 02-42 polyprotein gene, complete	5144	`................c..`	5162	94
DQ418784.1	Hepatitis C virus subtype 4a isolate 02C polyprotein gene, complete c	5189	`................c..`	5207	94
DQ418788.1	Hepatitis C virus subtype 4a isolate F7157 polyprotein gene, complete	5187	`................c..`	5205	94
DQ418789.1	Hepatitis C virus subtype 4a isolate L835 polyprotein gene, complete	5186	`................c..`	5204	94
DQ437509.2	Hepatitis C virus isolate 452 polyprotein gene, partial cds	4943	`.a.................`	4961	94
DQ516084.1	Hepatitis C virus subtype 4a isolate 25 polyprotein gene, complete cd	5204	`................c..`	5222	94
DQ988076.1	Hepatitis C virus isolate Eg7 polyprotein gene, partial cds	5181	`................t..`	5199	94
DQ988077.1	Hepatitis C virus isolate Eg9 polyprotein gene, partial cds	5185	`................t..`	5203	94
EF032883.1	Hepatitis C virus subtype 1a isolate 03-32_P1_10.16.03 polyprotein ge	5188	`..............a....`	5206	94
EF032884.1	Hepatitis C virus subtype 1a isolate 03-32_P2_5.14.04 polyprotein gen	5167	`..............a....`	5185	94
EF032885.1	Hepatitis C virus subtype 1a isolate 03-32_P4_11.5.05 polyprotein gen	5187	`..............a....`	5205	94
EF032886.1	Hepatitis C virus subtype 1a isolate BR601 polyprotein gene, complete	5193	`..............a....`	5211	94
EF032887.1	Hepatitis C virus subtype 1a isolate BR554_P1_5.23.03 polyprotein gen	5200	`..............a....`	5218	94
EF032888.1	Hepatitis C virus subtype 1a isolate BR554_P10_10.21.03 polyprotein g	5188	`..............a....`	5206	94
EF032889.1	Hepatitis C virus subtype 1a isolate BR554_P16_6.24.04 polyprotein ge	5172	`..............a....`	5190	94
EF032890.1	Hepatitis C virus subtype 1a isolate BR554_P17_10.21.04 polyprotein g	5186	`..............a....`	5204	94
EF032900.1	Hepatitis C virus subtype 1a isolate BR111_P5_4.30.03 polyprotein gen	5186	`..............a....`	5204	94
EF621489.1	Hepatitis C virus subtype 1a strain HC-TN, complete genome	5266	`..............a....`	5284	94
EF407411.1	Hepatitis C virus isolate 5043 polyprotein gene, complete cds	5175	`..............a....`	5193	94
EF407413.1	Hepatitis C virus isolate 5012 polyprotein gene, complete cds	5213	`....g..............`	5231	94
EF407421.1	Hepatitis C virus isolate 8030 polyprotein gene, complete cds	5169	`..............a....`	5187	94
EF407422.1	Hepatitis C virus isolate 6001 polyprotein gene, complete cds	5172	`..............a....`	5190	94
EF407424.1	Hepatitis C virus isolate 5069 polyprotein gene, partial cds	5202	`..............a....`	5220	94
EF407425.1	Hepatitis C virus isolate 6071 polyprotein gene, complete cds	5180	`..............a....`	5198	94
EF407427.1	Hepatitis C virus isolate 6025 polyprotein gene, complete cds	5213	`..............a....`	5231	94
EF407432.1	Hepatitis C virus isolate 1013 polyprotein gene, complete cds	5227	`..............a....`	5245	94
EF407436.1	Hepatitis C virus isolate 7040 polyprotein gene, complete cds	5171	`..............a....`	5189	94
EF407437.1	Hepatitis C virus isolate 1030 polyprotein gene, complete cds	5226	`..............a....`	5244	94
EF407440.1	Hepatitis C virus isolate 7002 polyprotein gene, complete cds	5214	`..............a....`	5232	94
EF407441.1	Hepatitis C virus isolate 1036 polyprotein gene, complete cds	5225	`..............a....`	5243	94
EF407443.1	Hepatitis C virus isolate 7024 polyprotein gene, complete cds	5226	`..............a....`	5244	94
EF407444.1	Hepatitis C virus isolate 6030 polyprotein gene, complete cds	5187	`..............a....`	5205	94
EF407445.1	Hepatitis C virus isolate 5009 polyprotein gene, complete cds	5187	`..............a....`	5205	94
EF407446.1	Hepatitis C virus isolate 8009 polyprotein gene, complete cds	5187	`..............a....`	5205	94
EF407448.1	Hepatitis C virus isolate 6018 polyprotein gene, partial cds	5226	`..............a....`	5244	94
EF407449.1	Hepatitis C virus isolate 2027 polyprotein gene, complete cds	5226	`..............a....`	5244	94
EF407451.1	Hepatitis C virus isolate 7041 polyprotein gene, complete cds	5189	`..............a....`	5207	94
EF407453.1	Hepatitis C virus isolate 4035 polyprotein gene, complete cds	5213	`..............a....`	5231	94
EF407456.1	Hepatitis C virus isolate 4025 polyprotein gene, complete cds	5225	`..............a....`	5243	94
EF407457.1	Hepatitis C virus isolate 1003 polyprotein gene, complete cds	5070	`..............a....`	5088	94
EF407460.1	Hepatitis C virus isolate 8007 polyprotein gene, complete cds	5216	`....g..............`	5234	94
EF407465.1	Hepatitis C virus isolate 6017 polyprotein gene, complete cds	5211	`......t............`	5229	94
EF407470.1	Hepatitis C virus isolate 4064 polyprotein gene, complete cds	5218	`....g..............`	5236	94
EF407482.1	Hepatitis C virus isolate 6053 polyprotein gene, complete cds	5151	`....g..............`	5169	94
EF407483.1	Hepatitis C virus isolate 4043 polyprotein gene, complete cds	5241	`....g..............`	5259	94
EF407502.1	Hepatitis C virus isolate 2038 polyprotein gene, complete cds	5295	`....g..............`	5313	94
EF407504.1	Hepatitis C virus isolate 8069 polyprotein gene, complete cds	5220	`....g..............`	5238	94
EF589160.1	Hepatitis C virus subtype 4f strain IFBT84 polyprotein gene, partial	5206	`................c..`	5224	94
EF589160.1	Hepatitis C virus subtype 4f strain IFBT84 polyprotein gene, partial	2947	`.a.........c....___`	2962	73
EF589161.1	Hepatitis C virus subtype 4f strain IFBT88 polyprotein gene, partial	5205	`................c..`	5223	94
EU155241.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V71/2002, complete	5162	`..............a....`	5180	94
EU155345.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V221/2002, complet	5174	`..............a....`	5192	94
EU362876.1	Hepatitis C virus isolate 1013_FU24 polyprotein (pol) gene, complete	5225	`..............a....`	5243	94
EU362878.1	Hepatitis C virus isolate 1030_FU24 polyprotein (pol) gene, partial c	5226	`..............a....`	5244	94
EU362881.1	Hepatitis C virus isolate 2027_FU24 polyprotein (pol) gene, partial c	5227	`..............a....`	5245	94
EU362883.1	Hepatitis C virus isolate 4025_FU24 polyprotein (pol) gene, partial c	5225	`..............a....`	5243	94
EU362884.1	Hepatitis C virus isolate 4035_FU24 polyprotein (pol) gene, complete	5228	`..............a....`	5246	94
EU362885.1	Hepatitis C virus isolate 5009_FU24 polyprotein (pol) gene, partial c	5184	`..............a....`	5202	94
EU362890.1	Hepatitis C virus isolate 7002_FU24 polyprotein (pol) gene, partial c	5225	`..............a....`	5243	94
EU362891.1	Hepatitis C virus isolate 7003_FU24 polyprotein (pol) gene, partial c	5188	`..............a....`	5206	94
EU362893.1	Hepatitis C virus isolate 7040_FU24 polyprotein (pol) gene, complete	5174	`..............a....`	5192	94
EU362894.1	Hepatitis C virus isolate 7041_FU24 polyprotein (pol) gene, partial c	5163	`..............a....`	5181	94
EU362898.1	Hepatitis C virus isolate 8012_FU24 polyprotein (pol) gene, complete	5170	`..............a....`	5188	94
EU362899.1	Hepatitis C virus isolate 1013q polyprotein (pol) gene, partial cds	5227	`..............a....`	5245	94
EU362900.1	Hepatitis C virus isolate 1030q polyprotein (pol) gene, partial cds	5226	`..............a....`	5244	94
EU362902.1	Hepatitis C virus isolate 2027q polyprotein (pol) gene, partial cds	5226	`..............a....`	5244	94
EU362903.1	Hepatitis C virus isolate 4025q polyprotein (pol) gene, partial cds	5225	`..............a....`	5243	94
EU362907.1	Hepatitis C virus isolate 7002q polyprotein (pol) gene, complete cds	5214	`..............a....`	5232	94
EU239715.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V423/2003, complet	5192	`..............a....`	5210	94
EU250017.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V508/2001, complet	5183	`..............a....`	5201	94
EU234063.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V177/1992, complet	5187	`..............a....`	5205	94
EU155215.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V105/2004, complet	5161	`..............a....`	5179	94
EU155216.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V115/2001, complet	5186	`..............a....`	5204	94
EU155218.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V145/2005, complet	5215	`......t............`	5233	94
EU155225.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V155/2003, complet	5215	`.t.................`	5233	94
EU155226.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V156/2004, complet	5214	`.t.................`	5232	94
EU155229.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V159/2004, complet	5214	`....g..............`	5232	94
EU155232.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V164/2002, complet	5215	`.t.................`	5233	94
EU155234.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V447/2006, complet	5215	`....g..............`	5233	94
EU155235.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V449/2006, complet	5214	`.......t...........`	5232	94
EU155236.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V450/2006, complet	5157	`..............a....`	5175	94
EU155237.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V457/2006, complet	5207	`..............a....`	5225	94
EU155238.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V465/2007, complet	5192	`..............a....`	5210	94
EU155239.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V54/2004, complete	5184	`..............a....`	5202	94
EU155244.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V90/2005, complete	5207	`..............a....`	5225	94
EU155245.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V91/2003, complete	5184	`..............a....`	5202	94
EU155246.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V93/2003, complete	5185	`..............a....`	5203	94
EU482833.1	Hepatitis C virus subtype 1b isolate HCV-1b/DE/BID-V503/2003, complet	5214	`.......t...........`	5232	94
EU482836.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V506/2002, complet	5197	`..............a....`	5215	94
EU482837.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V17/2004, complete	5183	`..............a....`	5201	94
EU482838.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V361/2006, complet	5201	`..............a....`	5219	94
EU482841.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V387/2004, complet	5199	`..............a....`	5217	94
EU482843.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V435/2005, complet	5193	`..............a....`	5211	94
EU482844.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V436/2006, complet	5200	`....g..............`	5218	94
EU482845.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V438/2006, complet	5199	`..............a....`	5217	94
EU482846.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V439/2000, complet	5196	`..............a....`	5214	94
EU482848.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V9/2005, complete	5168	`..............a....`	5186	94
EU482850.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V186/1990, complet	5161	`..............a....`	5179	94
EU482852.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V217/1989, complet	5183	`..............a....`	5201	94
EU482853.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V227/2005, complet	5185	`..............a....`	5203	94
EU482856.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V250/2002, complet	5184	`..............a....`	5202	94
EU482857.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V263/2005, complet	5183	`..............a....`	5201	94
EU482863.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V456/2006, complet	5196	`..............a....`	5214	94
EU482864.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V459/2006, complet	5199	`..............a....`	5217	94
EU482865.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V46/2003, complete	5172	`..............a....`	5190	94
EU482866.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V460/2006, complet	5199	`..............a....`	5217	94
EU482868.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V69/2002, complete	5183	`..............a....`	5201	94
EU482870.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V75/2004, complete	5207	`..............a....`	5225	94
EU482871.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V77/2002, complete	5175	`..............a....`	5193	94
EU482873.1	Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V28/2003, complete	5177	`..............a....`	5195	94
EU482875.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V310/2005, complet	5214	`....g..............`	5232	94
EU482876.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V330/2002, complet	5201	`..............a....`	5219	94
EU482878.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V19/2004, complete	5192	`..............a....`	5210	94
EU482879.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V372/2006, complet	5217	`..............a....`	5235	94
EU482882.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V410/2006, complet	5188	`..............a....`	5206	94
EU482884.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V38/2004, complete	4956	`..............a....`	4974	94
EU482887.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V66/2002, complete	5162	`..............a....`	5180	94
EU482889.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V179/1990, complet	5199	`..............a....`	5217	94
EU155248.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V336/2006, complet	5184	`..............a....`	5202	94
EU155249.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V337/2006, complet	5183	`..............a....`	5201	94
EU155250.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V358/2006, complet	5191	`..............a....`	5209	94
EU155251.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V359/2006, complet	5177	`..............a....`	5195	94
EU155252.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V362/2006, complet	5183	`..............a....`	5201	94
EU155254.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V365/2006, complet	5215	`....g..............`	5233	94
EU155256.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V367/2006, complet	5214	`....g..............`	5232	94
EU155262.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V381/2001, complet	5214	`..............a....`	5232	94
EU155263.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V384/2005, complet	5214	`....g..............`	5232	94
EU155266.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V390/2006, complet	5135	`..............a....`	5153	94
EU155271.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V401/2006, complet	5188	`..............a....`	5206	94
EU155272.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V404/2006, complet	5162	`..............a....`	5180	94
EU155273.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V406/2006, complet	5135	`..............a....`	5153	94
EU155274.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V407/2006, complet	5137	`..............a....`	5155	94
EU155276.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V432/2002, complet	5185	`..............a....`	5203	94
EU155278.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V437/2006, complet	5176	`..............a....`	5194	94
EU155286.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V319/2001, complet	5161	`..............a....`	5179	94
EU155287.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V320/2001, complet	5221	`..............a....`	5239	94
EU155290.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V325/2001, complet	5171	`..............a....`	5189	94
EU155291.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V326/2002, complet	5185	`..............a....`	5203	94
EU155292.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V327/2001, complet	5193	`..............a....`	5211	94
EU155298.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V334/2002, complet	5196	`..............a....`	5214	94
EU155299.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V335/2003, complet	5185	`..............a....`	5203	94
EU155301.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V344/2001, complet	5214	`............c......`	5232	94
EU155302.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V345/2001, complet	5214	`.t.................`	5232	94
EU155303.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V346/2001, complet	5214	`....g..............`	5232	94
EU155304.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V347/2003, complet	4943	`.t.................`	4961	94
EU155309.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V356/2003, complet	5181	`..............a....`	5199	94
EU155310.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V357/2004, complet	5181	`..............a....`	5199	94
EU155311.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V411/2003, complet	5192	`..............a....`	5210	94
EU155312.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V412/2000, complet	5174	`..............a....`	5192	94
EU155313.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V413/2003, complet	5174	`..............a....`	5192	94
EU155320.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V425/2001, complet	5137	`..............a....`	5155	94
EU155321.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V426/2001, complet	5140	`..............a....`	5158	94
EU155326.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V124/1992, complet	5214	`....g..............`	5232	94
EU155335.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V136/1992, complet	5214	`....g..............`	5232	94
EU155336.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V139/1992, complet	5214	`..............a....`	5232	94
EU155339.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V172/1990, complet	5161	`..............a....`	5179	94
EU155340.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V185/1991, complet	5161	`..............a....`	5179	94
EU155342.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V197/1989, complet	5161	`..............a....`	5179	94
EU155343.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V214/1996, complet	5185	`..............a....`	5203	94
EU155344.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V216/1990, complet	5172	`..............a....`	5190	94
EU155354.2	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V269/2005, complet	5191	`..............a....`	5209	94
EU155358.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V276/2004, complet	5214	`.a.................`	5232	94
EU155359.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V277/2002, complet	5215	`..............a....`	5233	94
EU155360.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V278/2003, complet	5214	`.a.................`	5232	94
EU155361.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V281/2004, complet	5214	`................c..`	5232	94
EU155362.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V282/2004, complet	5214	`.......t...........`	5232	94
EU155378.2	Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V26/2003, complete	5123	`..............a....`	5141	94
EU155380.2	Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V35/2004, complete	5171	`..............a....`	5189	94
EU234065.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V212/1990, complet	5161	`..............a....`	5179	94
EU529677.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V52/2006, complete	5194	`..............a....`	5212	94
EU529679.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V76/2002, complete	5179	`..............a....`	5197	94
EU529680.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V80/2002, complete	5203	`..............a....`	5221	94
EU569722.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V215/1989, complet	5200	`..............a....`	5218	94
EU595698.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V44/2001, complete	5183	`..............a....`	5201	94
EU595699.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V78/2001, complete	5096	`..............a....`	5114	94
EU660383.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V100/2004, complet	5192	`..............a....`	5210	94
EU687193.1	Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V1562/2005, comple	5161	`..............a....`	5179	94
EU687194.1	Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V1563/2004, comple	5193	`..............a....`	5211	94
EU255928.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V231/2003, complet	5192	`..............a....`	5210	94
EU255931.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V108/2003, complet	5192	`..............a....`	5210	94
EU255932.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V111/2005, complet	5192	`..............a....`	5210	94
EU255934.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V453/2006, complet	5200	`..............a....`	5218	94
EU255935.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V462/2007, complet	5196	`..............a....`	5214	94
EU255938.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V88/2003, complete	5198	`..............a....`	5216	94
EU255942.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V699/2007, complet	5198	`..............a....`	5216	94
EU255951.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V245/2005, complet	5198	`....g..............`	5216	94
EU255956.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V259/2003, complet	5193	`..............a....`	5211	94
EU256060.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V360/2006, complet	5186	`..............a....`	5204	94
EU256065.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V377/2006, complet	5214	`..............a....`	5232	94
EU256066.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V382/2003, complet	5215	`....g..............`	5233	94
EU256068.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V405/2006, complet	5186	`..............a....`	5204	94
EU256088.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V149/2003, complet	5214	`....g..............`	5232	94
EU256091.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V455/2006, complet	4932	`.t.................`	4950	94
EU256095.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V81/2002, complete	5196	`..............a....`	5214	94
EU256096.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V321/2001, complet	5186	`..............a....`	5204	94
EU256097.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V324/2001, complet	5192	`..............a....`	5210	94
EU256098.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V343/2002, complet	5229	`.......t...........`	5247	94
EU256099.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V348/2002, complet	5214	`......t............`	5232	94
EU256101.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V351/2002, complet	5214	`....g..............`	5232	94
EU256102.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V415/2001, complet	5214	`.......t...........`	5232	94
EU256104.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V430/2005, complet	5183	`..............a....`	5201	94
EU255993.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V102/2004, complet	5192	`..............a....`	5210	94
EU255994.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V103/2005, complet	5176	`..............a....`	5194	94
EU255997.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V109/2003, complet	5163	`..............a....`	5181	94
EU255998.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V113/2001, complet	5193	`..............a....`	5211	94
EU256002.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V41/2006, complete	5207	`..............a....`	5225	94
EU256005.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V451/2006, complet	5194	`..............a....`	5212	94
EU256008.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V47/2002, complete	5161	`..............a....`	5179	94
EU256009.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V49/2004, complete	5179	`..............a....`	5197	94
EU256010.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V50/2002, complete	5161	`..............a....`	5179	94
EU256011.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V51/2004, complete	5161	`..............a....`	5179	94
EU256012.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V511/2006, complet	5200	`..............a....`	5218	94
EU256014.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V56/2004, complete	5161	`..............a....`	5179	94
EU256015.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V57/2004, complete	5184	`..............a....`	5202	94
EU256018.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V60/2002, complete	5181	`..............a....`	5199	94
EU256020.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V62/2003, complete	5199	`..............a....`	5217	94
EU256022.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V65/2003, complete	5183	`..............a....`	5201	94
EU256026.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V82/2002, complete	5197	`..............a....`	5215	94
EU256028.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V84/2001, complete	5192	`..............a....`	5210	94
EU256030.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V87/2002, complete	5175	`..............a....`	5193	94
EU256031.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V89/2006, complete	5190	`..............a....`	5208	94
EU256032.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V92/2003, complete	5190	`..............a....`	5208	94
EU256033.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V94/2005, complete	5193	`..............a....`	5211	94
EU256035.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V96/2004, complete	5192	`..............a....`	5210	94
EU256038.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V99/2004, complete	5197	`..............a....`	5215	94
EU256039.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V16/2004, complete	5185	`..............a....`	5203	94
EU256040.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V18/2004, complete	5192	`..............a....`	5210	94
EU256041.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V2/2005, complete	5197	`..............a....`	5215	94
EU256044.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V378/2001, complet	5171	`..............a....`	5189	94
EU256046.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V392/2006, complet	5192	`..............a....`	5210	94
EU256047.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V393/2006, complet	5192	`..............a....`	5210	94
EU256048.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V394/2006, complet	5192	`..............a....`	5210	94
EU256052.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V403/2006, complet	5191	`..............a....`	5209	94
EU256055.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V6/2001, complete	5188	`..............a....`	5206	94
EU256057.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V702/2006, complet	5200	`..............a....`	5218	94
EU256058.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V8/2005, complete	5178	`..............a....`	5196	94
EU256070.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V232/2003, complet	5185	`..............a....`	5203	94
EU256074.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V264/2005, complet	5190	`..............a....`	5208	94
EU256079.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V286/2005, complet	5215	`....g..............`	5233	94
EU256082.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V298/2005, complet	5215	`..............a....`	5233	94
EU255963.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V166/1992, complet	5193	`..............a....`	5211	94
EU255965.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V168/1990, complet	5190	`..............a....`	5208	94
EU255967.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V171/1997, complet	5171	`..............a....`	5189	94
EU255968.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V173/1989, complet	5176	`..............a....`	5194	94
EU255969.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V174/1992, complet	5188	`..............a....`	5206	94
EU255973.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V180/1990, complet	5187	`..............a....`	5205	94
EU255974.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V181/1992, complet	5190	`..............a....`	5208	94
EU255975.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V183/1994, complet	5191	`..............a....`	5209	94
EU255977.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V187/1991, complet	5191	`..............a....`	5209	94
EU255978.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V188/1991, complet	5180	`..............a....`	5198	94
EU255979.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V189/1991, complet	5193	`..............a....`	5211	94
EU255980.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V190/1990, complet	5184	`..............a....`	5202	94
EU255981.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V191/1990, complet	5199	`..............a....`	5217	94
EU255983.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V195/1990, complet	5185	`..............a....`	5203	94
EU255984.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V200/1990, complet	5178	`..............a....`	5196	94
EU255985.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V201/1991, complet	5195	`..............a....`	5213	94
EU255986.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V203/1989, complet	5193	`..............a....`	5211	94
EU255990.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V209/1992, complet	5191	`..............a....`	5209	94
EU255991.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V210/1989, complet	5181	`..............a....`	5199	94
EU255992.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V213/1992, complet	5187	`..............a....`	5205	94
EU158186.1	Hepatitis C virus isolate NK46, complete genome	5238	`..............a....`	5256	94
FJ024086.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1704/2007, comple	5214	`....g..............`	5232	94
FJ024276.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1710/2007, comple	5158	`..............a....`	5176	94
FJ024277.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1711/2007, comple	5214	`.t.................`	5232	94
FJ024278.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1713/2007, comple	5160	`..............a....`	5178	94
FJ024281.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1718/2007, comple	5190	`..............a....`	5208	94
EU862823.1	Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V24/2003, complete	5172	`..............a....`	5190	94
EU862824.1	Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V31/2004, partial	5183	`..............a....`	5201	94
EU862826.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V198/1989, partial	5183	`..............a....`	5201	94
EU862827.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V218/1993, partial	5183	`..............a....`	5201	94
EU862835.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V509/2001, partial	5211	`....g..............`	5229	94
FJ181999.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1706/2007, comple	5177	`..............a....`	5195	94
FJ205867.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1709/2007, comple	5226	`..............a....`	5244	94
FJ205868.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1714/2007, comple	5170	`..............a....`	5188	94
FJ205869.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1720/2006, comple	5160	`..............a....`	5178	94
EU798760.1	Hepatitis C virus subtype 6v isolate KMN-02 polyprotein precursor, ge	5269	`..............a....`	5287	94
EU798761.1	Hepatitis C virus subtype 6v isolate KM046 polyprotein precursor, gen	5238	`..............a....`	5256	94
FJ390394.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1745/2008, comple	5176	`..............a....`	5194	94
FJ390395.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1747/2008, comple	5153	`..............a....`	5171	94
FJ390397.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1749/2008, comple	5214	`....g..............`	5232	94
FJ410172.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1746/2008, comple	5160	`..............a....`	5178	94
EU781804.1	Hepatitis C virus subtype 1a isolate 02-46, complete genome	5181	`..............a....`	5199	94
EU781823.1	Hepatitis C virus subtype 1a isolate 03-12, complete genome	5189	`..............a....`	5207	94
AB442219.1	Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-	5266	`......t............`	5284	94
AB442222.1	Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B-	5269	`..............a....`	5287	94
FJ435090.1	Hepatitis C virus isolate KM181 genotype 6v, complete genome	5269	`..............a....`	5287	94
FJ462431.1	Hepatitis C virus isolate QC139, complete genome	5265	`.a.................`	5283	94
FJ462432.1	Hepatitis C virus isolate QC193, complete genome	5257	`................c..`	5275	94
FJ462434.1	Hepatitis C virus isolate QC262, complete genome	5263	`................c..`	5281	94
FJ462435.1	Hepatitis C virus isolate QC264, complete genome	5265	`..........t........`	5283	94
FJ462436.1	Hepatitis C virus isolate QC381, complete genome	5265	`................t..`	5283	94
FJ462438.1	Hepatitis C virus isolate QC383, complete genome	5266	`................c..`	5284	94
GQ149768.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V2147/2002, comple	5177	`..............a....`	5195	94
FJ839869.1	Hepatitis C virus isolate QC155, complete genome	5265	`.a.................`	5283	94
EU862828.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V12/2004, complete	5199	`..............a....`	5217	94
EU862831.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V400/2006, complet	5184	`..............a....`	5202	94
EU862832.1	Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V27/2003, complete	5180	`..............a....`	5198	94
EU862834.1	Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V37/2004, complete	5111	`..............a....`	5129	94
EU862837.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V304/2004, complet	5221	`..............a....`	5239	94
EU862838.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V165/1992, complet	5200	`..............a....`	5218	94
EU862840.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V40/2003, complete	5207	`..............a....`	5225	94
EU862841.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V48/2003, complete	5181	`..............a....`	5199	94
GQ275355.1	Hepatitis C virus subtype 3a, complete genome	5291	`.a.................`	5309	94
GU133617.1	Hepatitis C virus subtype 1b, complete genome	5266	`....g..............`	5284	94
Y11604.1	Hepatitis C virus type 4a RNA for HCV polyprotein	5204	`................t..`	5222	94
AF009606.1	Hepatitis C virus subtype 1a polyprotein gene, complete cds	5266	`..............a....`	5284	94
EU155219.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V146/2002, complet	5215	`_...g..............`	5232	89
EU155221.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V148/2004, complet	5215	`_...g..............`	5232	89
EU482885.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V448/2006, complet	5218	`_...g..............`	5235	89
EU155333.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V133/1989, complet	5204	`_...g..............`	5221	89
FJ462433.1	Hepatitis C virus isolate QC249, complete genome	5263	`.......y........c..`	5281	89
L02836.1	HPCCGENOM Hepatitis C virus subtype 1b strain HeBei, complete genome	5255	`.t............a....`	5273	89
D14853.1	HPCCGS Hepatitis C virus (isolate HC-G9) genomic RNA, complete genome	5266	`....g...........t..`	5284	89
D30613.1	HPCPP Hepatitis C virus complete genome sequence	5266	`....g.t............`	5284	89
D49374.1	HPCFG Hepatitis C virus (isolate Tr Kj) genomic RNA, complete genome	5288	`....g...........t..`	5306	89
D63857.1	HPVHCVN Hepatitis C virus gene for E1 and E2/NS1 envelope glycoprotein	5173	`....g.........a....`	5191	89
D50482.1	HPCK1R3 Hepatitis C virus (strain HCV-1b, clone HCV-K1-R3), complete g	5254	`.t....t............`	5272	89
D50484.1	HPCK1S3 Hepatitis C virus (strain HCV-1b, clone HCV-K1-S3), complete g	5254	`.t....t............`	5272	89
U45476.1	HCU45476 Hepatitis C virus isolate HD-1, complete genome	5266	`....g.t............`	5284	89
D63822.1	HPCJK046E2 Hepatitis C virus (isolate JK046) genomic RNA, complete gen	5275	`....g...........c..`	5293	89
D45172.1	HPCHCPO Hepatitis C virus genomic RNA for HCV polyprotein, complete cd	5266	`....g.t............`	5284	89
D89872.1	Hepatitis C virus RNA for polyprotein, complete cds	4925	`......t.g..........`	4943	89
Y12083.1	Hepatitis C virus genotype 6a RNA for HCV polyprotein	5220	`..............a.c..`	5238	89
U89019.1	HCU89019 Hepatitis C virus subtype 1b, complete genome	5258	`....g.........a....`	5276	89
AF046866.1	Hepatitis C virus subtype 3a strain CB polyprotein gene, complete cds	5282	`.a......g..........`	5300	89
AF165057.1	Hepatitis C virus subtype 1b strain MD7-1, complete genome	5254	`.....ct............`	5272	89
AF165058.1	Hepatitis C virus subtype 1b strain MD7-2, complete genome	5254	`.....ct............`	5272	89
AB049094.1	Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT16	5270	`......tt...........`	5288	89
AB049095.1	Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT16	5235	`....g.t............`	5253	89
AB049099.1	Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT21	5269	`......t.........t..`	5287	89
AY051292.1	Hepatitis C virus (isolate India) polyprotein mRNA, complete cds	5266	`..c.............t..`	5284	89
AF511950.1	Hepatitis C virus isolate XF224 polyprotein-like gene, complete seque	5238	`..........t...a....`	5256	89
AY587844.1	Hepatitis C virus strain N589 polyprotein gene, complete cds	5214	`.t..g..............`	5232	89
AY587845.1	Hepatitis C virus strain RF1_2k/1b, N687 polyprotein gene, complete c	5205	`......tt...........`	5223	89
AY651061.1	Hepatitis C virus isolate Khaja1, complete genome	5266	`..c.............t..`	5284	89
AB154181.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`....g.t............`	5272	89
AB154182.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`....g.t............`	5272	89
AB154192.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`....g.t............`	5272	89
AB154198.1	Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola	5254	`.t....t............`	5272	89
D84263.2	Hepatitis C virus (isolate VN235) genomic RNA, complete genome	5257	`..............a.c..`	5275	89
DQ278892.1	Hepatitis C virus isolate GZ52557, complete genome	5279	`....g...........t..`	5297	89
DQ418782.1	Hepatitis C virus subtype 4a isolate 01-09 polyprotein gene, complete	5182	`.a..............c..`	5200	89
DQ418785.1	Hepatitis C virus isolate 02Q polyprotein gene, partial cds	5187	`..........t.....t..`	5205	89
DQ418787.1	Hepatitis C virus subtype 4a isolate F753 polyprotein gene, complete	5187	`..........t.....t..`	5205	89
DQ480513.1	Hepatitis C virus subtype 6a strain 6a35, complete genome	5238	`..............a.c..`	5256	89
DQ480516.1	Hepatitis C virus subtype 6a strain 6a61, complete genome	5238	`..............a.c..`	5256	89
DQ480517.1	Hepatitis C virus subtype 6a strain 6a73, complete genome	5238	`..............a.c..`	5256	89
DQ480518.1	Hepatitis C virus subtype 6a strain 6a65, complete genome	5238	`..............a.c..`	5256	89
DQ480519.1	Hepatitis C virus subtype 6a strain 6a66, complete genome	5238	`..............a.c..`	5256	89
DQ480520.1	Hepatitis C virus subtype 6a strain 6a67, complete genome	5238	`..............a.c..`	5256	89
DQ480521.1	Hepatitis C virus subtype 6a strain 6a69, complete genome	5238	`..............a.c..`	5256	89
DQ480522.1	Hepatitis C virus subtype 6a strain 6a72, complete genome	5238	`..............a.c..`	5256	89
DQ480522.1	Hepatitis C virus subtype 6a strain 6a72, complete genome	1006	`_____...c..........`	1019	68
DQ480524.1	Hepatitis C virus subtype 6a strain 6a74, complete genome	5241	`..............a.c..`	5259	89
DQ835760.1	Hepatitis C virus subtype 6f isolate C-0044, complete genome	5263	`..............a.c..`	5281	89
DQ835763.1	Hepatitis C virus subtype 6m isolate C-0208, complete genome	5269	`.a............a....`	5287	89
DQ835764.1	Hepatitis C virus subtype 6f isolate C-0046, complete genome	5263	`..............a.c..`	5281	89
DQ835765.1	Hepatitis C virus subtype 6m isolate C-0185, complete genome	5269	`.a............a....`	5287	89
DQ835766.1	Hepatitis C virus subtype 6m isolate C-0192, complete genome	5269	`.a............a....`	5287	89
DQ835767.1	Hepatitis C virus subtype 6m isolate B4/92, complete genome	5269	`.a............a....`	5287	89
DQ988074.1	Hepatitis C virus isolate Eg3 polyprotein gene, partial cds	5181	`.t..............t..`	5199	89
DQ988075.1	Hepatitis C virus isolate Eg4 polyprotein gene, partial cds	5184	`.t..............t..`	5202	89
DQ988078.1	Hepatitis C virus isolate Eg10 polyprotein gene, partial cds	5180	`.t..............t..`	5198	89
EF407414.1	Hepatitis C virus isolate 7018 polyprotein gene, complete cds	5169	`.t............a....`	5187	89
EF407415.1	Hepatitis C virus isolate 3018 polyprotein gene, complete cds	5216	`....g.........a....`	5234	89
EF407417.1	Hepatitis C virus isolate 4040 polyprotein gene, complete cds	5225	`....g.........a....`	5243	89
EF407418.1	Hepatitis C virus isolate 7020 polyprotein gene, complete cds	5210	`....g.........a....`	5228	89
EF407419.1	Hepatitis C virus isolate 5003 polyprotein gene, complete cds	5217	`....g.........a....`	5235	89
EF407426.1	Hepatitis C virus isolate 8070 polyprotein genomic sequence	5215	`....g.........a....`	5233	89
EF407428.1	Hepatitis C virus isolate 1024 polyprotein gene, complete cds	5172	`....g.........a....`	5190	89
EF407431.1	Hepatitis C virus isolate 3005 polyprotein gene, complete cds	5161	`....g.........a....`	5179	89
EF407433.1	Hepatitis C virus isolate 7046 polyprotein gene, complete cds	5217	`....g.........a....`	5235	89
EF407434.1	Hepatitis C virus isolate 2011 polyprotein gene, complete cds	5188	`....g.........a....`	5206	89
EF407435.1	Hepatitis C virus isolate 5014 polyprotein gene, complete cds	5183	`....g.........a....`	5201	89
EF407442.1	Hepatitis C virus isolate 8012 polyprotein gene, complete cds	5180	`....g.........a....`	5198	89
EF407450.1	Hepatitis C virus isolate 6020 polyprotein gene, complete cds	5184	`.a............a....`	5202	89
EF407455.1	Hepatitis C virus isolate 7065 polyprotein gene, complete cds	5226	`.t............a....`	5244	89
EU155294.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V329/2002, complet	5160	`....g.........a....`	5178	89
EU260395.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V10/2005, complete	5199	`....g.........a....`	5217	89
EU246930.1	Hepatitis C virus strain D9 polyprotein gene, complete cds	5256	`..............a.c..`	5274	89
EU362877.1	Hepatitis C virus isolate 1024_FU24 polyprotein (pol) gene, complete	5171	`....g.........a....`	5189	89
EU362879.1	Hepatitis C virus isolate 2005_FU24 polyprotein (pol) gene, partial c	5225	`..........t...a....`	5243	89
EU362880.1	Hepatitis C virus isolate 2011_FU24 polyprotein (pol) gene, partial c	5187	`....g.........a....`	5205	89
EU362882.1	Hepatitis C virus isolate 3005_FU24 polyprotein (pol) gene, complete	5185	`....g.........a....`	5203	89
EU362886.1	Hepatitis C virus isolate 5014_FU24 polyprotein (pol) gene, complete	5188	`....g.........a....`	5206	89
EU362895.1	Hepatitis C virus isolate 7043_FU24 polyprotein (pol) gene, complete	5184	`.t............a....`	5202	89
EU362896.1	Hepatitis C virus isolate 7046_FU24 polyprotein (pol) gene, complete	5225	`....g.........a....`	5243	89
EU362897.1	Hepatitis C virus isolate 7065_FU24 polyprotein (pol) gene, complete	5225	`.t............a....`	5243	89
EU362901.1	Hepatitis C virus isolate 2011q polyprotein (pol) gene, complete cds	5188	`....g.........a....`	5206	89
EU260396.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V11/2004, complete	5169	`..........t...a....`	5187	89
EU234064.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V182/1990, complet	5180	`....g.........a....`	5198	89
EU155213.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V101/2004, complet	5195	`....g.........a....`	5213	89
EU155214.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V104/2005, complet	5192	`....g.........a....`	5210	89
EU155233.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V445/2006, complet	5193	`....g.........a....`	5211	89
EU155240.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V68/2004, complete	5184	`....g.........a....`	5202	89
EU155242.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V73/2004, complete	5183	`....g.........a....`	5201	89
EU155243.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V86/2005, complete	5161	`....g.........a....`	5179	89
EU482831.1	Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V25/2003, complete	5172	`....g.........a....`	5190	89
EU482832.1	Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V33/2004, complete	5176	`....g.........a....`	5194	89
EU482834.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V422/2002, complet	5148	`....g.........a....`	5166	89
EU482835.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V427/2002, complet	5199	`....g.........a....`	5217	89
EU482840.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V386/2004, complet	5204	`....g.........a....`	5222	89
EU482842.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V389/2006, complet	5171	`....g.........a....`	5189	89
EU482847.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V5/2004, complete	5183	`....g.........a....`	5201	89
EU482855.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V249/2002, complet	5177	`....g.........a....`	5195	89
EU482859.1	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V272/2003, complet	5214	`....g.........a....`	5232	89
EU482861.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V446/2006, complet	5192	`....g.........a....`	5210	89
EU482867.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V461/2006, complet	5199	`....g.........a....`	5217	89
EU482872.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V261/2004, complet	5198	`....g.........a....`	5216	89
EU482883.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V153/2005, complet	5220	`.....ct............`	5238	89
EU155253.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V363/2006, complet	5217	`.....ct............`	5235	89
EU155265.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V388/2005, complet	5186	`....g.........a....`	5204	89
EU155268.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V396/2006, complet	5161	`....g.........a....`	5179	89
EU155269.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V398/2006, complet	5185	`....g.........a....`	5203	89
EU155270.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V399/2006, complet	5183	`..........t...a....`	5201	89
EU155275.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V409/2006, complet	5186	`..........t...a....`	5204	89
EU155277.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V434/2003, complet	5161	`....g.........a....`	5179	89
EU155283.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V698/2006, complet	5199	`....g.........a....`	5217	89
EU155284.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V317/2001, complet	5200	`....g.........a....`	5218	89
EU155285.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V318/2001, complet	5174	`.t............a....`	5192	89
EU155288.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V322/2002, complet	5183	`.t............a....`	5201	89
EU155289.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V323/2001, complet	5192	`....g.........a....`	5210	89
EU155293.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V328/2001, complet	5136	`.t............a....`	5154	89
EU155295.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V331/2002, complet	5185	`....g.........a....`	5203	89
EU155297.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V333/2002, complet	5182	`....g.........a....`	5200	89
EU155314.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V414/2004, complet	5140	`....g.........a....`	5158	89
EU155317.2	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V420/2002, complet	5214	`.......tg..........`	5232	89
EU155319.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V424/2002, complet	5144	`....g.........a....`	5162	89
EU155322.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V428/2001, complet	5180	`....g.........a....`	5198	89
EU155323.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V429/2002, complet	5177	`....g.........a....`	5195	89
EU155338.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V169/1996, complet	5184	`.t............a....`	5202	89
EU155341.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V192/1992, complet	5194	`....g.........a....`	5212	89
EU155346.2	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V236/2005, complet	5188	`....g.........a....`	5206	89
EU155348.2	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V240/2005, complet	5175	`....g.........a....`	5193	89
EU155349.2	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V246/2005, complet	5173	`....g.........a....`	5191	89
EU155351.2	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V257/2003, complet	5187	`....g.........a....`	5205	89
EU155352.2	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V262/2004, complet	5192	`....g.........a....`	5210	89
EU155353.2	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V267/2005, complet	5184	`....g.........a....`	5202	89
EU155355.2	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V270/2006, complet	5190	`....g.........a....`	5208	89
EU155370.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V300/2005, complet	5214	`.t....t............`	5232	89
EU155371.2	Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V301/2005, complet	5211	`.t....t............`	5229	89
EU529676.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V39/2004, complete	5198	`....g.........a....`	5216	89
EU529678.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V63/2005, complete	5180	`....g.........a....`	5198	89
EU569723.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V13/2005, complete	5185	`....g.........a....`	5203	89
EU595697.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V507/2001, complet	5182	`....g.........a....`	5200	89
EU408327.1	Hepatitis C virus isolate 535318 polyprotein precursor, gene, complet	5266	`..............a.c..`	5284	89
EU660385.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V258/2003, complet	5175	`....g.........a....`	5193	89
EU660386.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V355/2006, complet	5214	`..........t...a....`	5232	89
EU660387.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V701/2003, complet	5183	`....g.........a....`	5201	89
EU687195.1	Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V1564/2007, comple	5200	`....g.........a....`	5218	89
EU255927.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V222/2003, complet	5187	`....g.........a....`	5205	89
EU255936.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V510/2006, complet	5193	`....g.........a....`	5211	89
EU255939.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V408/2006, complet	5185	`....g.........a....`	5203	89
EU255940.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V433/2006, complet	5199	`....g.........a....`	5217	89
EU255941.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V697/2006, complet	5198	`....g.........a....`	5216	89
EU255943.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V223/2003, complet	5185	`....g.........a....`	5203	89
EU255944.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V224/2003, complet	5168	`....g.........a....`	5186	89
EU255947.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V228/2006, complet	5199	`....g.........a....`	5217	89
EU255950.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V241/2005, complet	5184	`....g.........a....`	5202	89
EU255952.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V247/2005, complet	5187	`....g.........a....`	5205	89
EU255953.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V248/2006, complet	5189	`.t............a....`	5207	89
EU255954.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V252/2002, complet	5191	`....g............a.`	5209	89
EU255955.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V254/2002, complet	5175	`....g.........a....`	5193	89
EU255957.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V260/2004, complet	5214	`....g.........a....`	5232	89
EU255958.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V265/2005, complet	5192	`..............a.t..`	5210	89
EU256059.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V220/2005, complet	5214	`.....ct............`	5232	89
EU256067.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V402/2006, complet	5193	`..........t...a....`	5211	89
EU256086.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V110/2003, complet	5164	`....g.........a....`	5182	89
EU256087.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V114/2001, complet	5161	`....g.........a....`	5179	89
EU256090.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V162/2002, complet	5214	`......t.........c..`	5232	89
EU256107.1	Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V36/2004, complete	5193	`....g.........a....`	5211	89
EU255996.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V107/2003, complet	5197	`....g.........a....`	5215	89
EU255999.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V116/2002, complet	5179	`....g.........a....`	5197	89
EU256001.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V144/2002, complet	5214	`.a.....t...........`	5232	89
EU256006.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V452/2006, complet	5200	`....g.........a....`	5218	89
EU256007.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V464/2006, complet	5182	`....g.........a....`	5200	89
EU256013.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V53/2004, complete	5190	`.t............a....`	5208	89
EU256019.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V61/2001, complete	5188	`....g.........a....`	5206	89
EU256025.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V79/2002, complete	5162	`....g.........a....`	5180	89
EU256029.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V85/2001, complete	5179	`....g.........a....`	5197	89
EU256034.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V95/2006, complete	5196	`....g.........a....`	5214	89
EU256036.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V97/2004, complete	5192	`....g.........a....`	5210	89
EU256043.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V3/2005, complete	5161	`.t............a....`	5179	89
EU256049.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V395/2006, complet	5192	`....g.........a....`	5210	89
EU256050.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V397/2006, complet	5193	`.t............a....`	5211	89
EU256051.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V4/2005, complete	5188	`.t............a....`	5206	89
EU256053.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V440/2001, complet	5193	`....g.........a....`	5211	89
EU256056.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V7/2003, complete	5163	`....g.........a....`	5181	89
EU256069.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V229/2006, complet	5173	`....g.........a....`	5191	89
EU255961.1	Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V137/1991, complet	5215	`.....ct............`	5233	89
EU255964.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V167/1992, complet	5176	`....g.........a....`	5194	89
EU255966.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V170/1997, complet	5197	`....g.........a....`	5215	89
EU255970.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V176/1992, complet	5184	`....g.........a....`	5202	89
EU255982.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V194/1990, complet	5190	`....g.........a....`	5208	89
EU255987.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V205/1989, complet	5174	`....g.........a....`	5192	89
EU255988.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V206/1995, complet	5182	`....g.........a....`	5200	89
EU255989.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V208/1990, complet	5199	`....g.........a....`	5217	89
EU857431.1	Hepatitis C virus subtype 1b isolate Whu, complete genome	5266	`....g.t............`	5284	89
FJ024087.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1705/2007, comple	5193	`..........t...a....`	5211	89
FJ024274.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1707/2007, comple	5119	`....g.........a....`	5137	89
FJ024275.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1708/2007, comple	5158	`..........t...a....`	5176	89
FJ024280.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1717/2007, comple	5175	`.t............a....`	5193	89
FJ024282.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1719/2005, comple	5178	`....g.........a....`	5196	89
FJ182001.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1716/2007, comple	5184	`..........t...a....`	5202	89
FJ390399.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1751/2007, comple	5137	`.t............a....`	5155	89
EU781824.1	Hepatitis C virus subtype 1a isolate DN14, complete genome	5212	`....g.........a....`	5230	89
EU643834.1	Hepatitis C virus isolate HCV-6-D140 polyprotein gene, complete cds	5005	`....g...........t..`	5023	89
EU643835.1	Hepatitis C virus isolate HCV-6-D177 polyprotein gene, complete cds	5002	`....g...........t..`	5020	89
FJ462437.1	Hepatitis C virus isolate QC382, complete genome	5262	`....g...........c..`	5280	89
FJ462439.1	Hepatitis C virus isolate QC384, complete genome	5265	`.t..g..............`	5283	89
FJ462441.1	Hepatitis C virus isolate QC97, complete genome	5268	`.a..............c..`	5286	89
AB520610.1	Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC	5266	`....g.........a....`	5284	89
FJ821465.1	Hepatitis C virus strain M21-2k/1b, complete genome	5252	`......t..........a.`	5270	89
EU862839.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V175/1990, complet	5194	`.t............a....`	5212	89
Y13184.1	Hepatitis C virus genotype 5a RNA for HCV polyprotein TTCACGCAGAAAGCG	5207	`....g...........t..`	5225	89
D17763.1	HPCEGS Hepatitis C virus (isolate NZL1) genomic RNA, complete genome	5282	`.a......c..........`	5300	89
U01214.1	HCU01214 Hepatitis C virus subtype 1b strain HCV-L2, complete genome	5267	`.....ct..........._`	5284	84
DQ988073.1	Hepatitis C virus isolate Eg2 polyprotein gene, partial cds	5184	`.t..r...........t..`	5202	84
D28917.1	HPCK3A Hepatitis C virus (isolate HCV-K3a/650) genomic RNA, complete g	5282	`.a..g...g..........`	5300	84
AF165061.1	Hepatitis C virus subtype 1b strain MD9-1, complete genome	5254	`....gct............`	5272	84
AF165062.1	Hepatitis C virus subtype 1b strain MD9-2, complete genome	5254	`....gct............`	5272	84
AY859526.1	Hepatitis C virus (isolate 6a33), complete genome	5235	`....g.........a.c..`	5253	84
D84265.2	Hepatitis C virus (isolate VN004) genomic RNA, complete genome	5266	`.t............a.t..`	5284	84
AY878651.1	Hepatitis C virus subtype 6k isolate KM41, complete genome	5237	`.g............a.t..`	5255	84
AY878652.1	Hepatitis C virus subtype 6n isolate KM42, complete genome	5236	`.a............a.c..`	5254	84
AY878652.1	Hepatitis C virus subtype 6n isolate KM42, complete genome	8970	`_....g..tc.........`	8987	78
DQ278893.1	Hepatitis C virus subtype 6k isolate KM41, complete genome	5269	`.g............a.t..`	5287	84
DQ278894.1	Hepatitis C virus subtype 6n isolate KM42, complete genome	5270	`.a............a.c..`	5288	84
DQ278894.1	Hepatitis C virus subtype 6n isolate KM42, complete genome	9004	`_....g..tc.........`	9021	78
DQ418786.1	Hepatitis C virus subtype 4d isolate 03-18 polyprotein gene, complete	5156	`.a..g...........c..`	5174	84
DQ480512.1	Hepatitis C virus subtype 6a strain 6a77, complete genome	5238	`.t............a.c..`	5256	84
DQ480514.1	Hepatitis C virus subtype 6a strain 6a63, complete genome	5238	`.t............a.c..`	5256	84
DQ480515.1	Hepatitis C virus subtype 6a strain 6a64, complete genome	5238	`.t............a.c..`	5256	84
DQ516083.1	Hepatitis C virus subtype 4d isolate 24 polyprotein gene, complete cd	5201	`...........gc...c..`	5219	84
DQ835768.1	Hepatitis C virus subtype 6n isolate D86/93, complete genome	5266	`.a............a.c..`	5284	84
DQ835768.1	Hepatitis C virus subtype 6n isolate D86/93, complete genome	9000	`_....g..tc.........`	9017	78
DQ835770.1	Hepatitis C virus subtype 6i isolate Th602, complete genome	5269	`.t............a.c..`	5287	84
DQ988079.1	Hepatitis C virus isolate Eg12 polyprotein gene, partial cds	5184	`.t..g...........t..`	5202	84
EF424625.1	Hepatitis C virus subtype 6q isolate QC99, complete genome	5267	`.a............a.c..`	5285	84
EF424626.1	Hepatitis C virus subtype 6p isolate QC216, complete genome	5267	`.t............a.c..`	5285	84
EF424629.1	Hepatitis C virus subtype 6c isolate Th846, complete genome	5264	`.t............a.c..`	5282	84
EF407438.1	Hepatitis C virus isolate 7012 polyprotein gene, complete cds	5213	`.a..g.........a....`	5231	84
EF632069.1	Hepatitis C virus isolate TV241, complete genome	5266	`.a............a.c..`	5284	84
EF632070.1	Hepatitis C virus isolate TV249, complete genome	5266	`.t............a.c..`	5284	84
EF632071.1	Hepatitis C virus isolate VT21, complete genome	5252	`.a............a.c..`	5270	84
EU246935.1	Hepatitis C virus strain TH24 polyprotein gene, complete cds	5210	`.t............a.c..`	5228	84
EU246939.1	Hepatitis C virus strain D49 polyprotein gene, complete cds	5241	`.a............a.c..`	5259	84
EU362892.1	Hepatitis C virus isolate 7012_FU24 polyprotein (pol) gene, complete	5211	`.a..g.........a....`	5229	84
EU239713.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V316/2001, complet	5214	`.t..g.........a....`	5232	84
EU239716.2	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V431/2002, complet	5183	`.t..g.........a....`	5201	84
EU255933.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V112/2003, complet	5174	`.t..g.........a....`	5192	84
EU255937.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V700/2006, complet	5183	`....g.........a.t..`	5201	84
EU255945.1	Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V225/2004, complet	5185	`.t..g.........a....`	5203	84
FJ182000.1	Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1712/2007, comple	5160	`.t..g.........a....`	5178	84
FJ407092.1	Hepatitis C virus isolate IND-HCV-3i, complete genome	5283	`.t............a.c..`	5301	84
FJ462440.1	Hepatitis C virus isolate QC93, complete genome	5266	`.a..g...........c..`	5284	84
AY878650.1	Hepatitis C virus subtype 6k isolate KM45, complete genome	8986	`_....g..tc.........`	9003	78
DQ278891.1	Hepatitis C virus subtype 6k isolate KM45, complete genome	9002	`_....g..tc.........`	9019	78
DQ314805.1	Hepatitis C virus subtype 6e isolate GX004, complete genome	2473	`_...t..........____`	2486	68

VIRsiRNAdb

Database of Viral siRNA / shRNA