VIRsiRNAdb

../../tmp/servers/virsirnadb/1805310117
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi1821	1	`ccggccaactacttcgaaa`	19
M33854.1	CXA3CG Coxsackievirus B3 (CVB3) complete genome	237	`...................`	255	100
M16572.1	CXA3G Coxsackievirus B3, complete genome	237	`...................`	255	100
M88483.1	CXAB3CG Coxsackievirus B3 mRNA, complete genome	238	`...................`	256	100
U57056.1	CXU57056 Coxsackievirus B3 Woodruff variant, complete genome	238	`...................`	256	100
AF231763.1	Coxsackievirus B3 strain 31-1-93, complete genome	238	`...................`	256	100
AF231764.1	Coxsackievirus B3 strain P, complete genome	238	`...................`	256	100
AY302543.1	Human echovirus 17 strain CHHE-29 complete genome	239	`...................`	257	100
AY302556.1	Human echovirus 33 strain Toluca-3 complete genome	238	`...................`	256	100
AY752945.1	Human coxsackievirus B3 strain 0, complete genome	238	`...................`	256	100
AY752946.1	Human coxsackievirus B3 strain 20, complete genome	238	`...................`	256	100
AY843299.1	Human enterovirus 81 strain USA/CA68-10389, complete genome	235	`...................`	253	100
EU147493.1	Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds	237	`...................`	255	100
AY752944.2	Human coxsackievirus B3 strain 28, complete genome	238	`...................`	256	100
X05690.1	Coxsackievirus B4 complete genome	239	`.................g.`	257	94
S76772.1	polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive	240	`.....t.............`	258	94
AF085363.1	Coxsackievirus B2 strain Ohio-1 polyprotein gene, complete cds	238	`.................g.`	256	94
AF081485.1	Coxsackievirus B2 strain Ohio, complete genome	237	`.................g.`	255	94
AF029859.2	Echovirus 1 (strain Farouk / ATCC VR-1038) polyprotein precursor, gen	239	`.................g.`	257	94
AF231765.1	Coxsackievirus B3 strain PD, complete genome	238	`...........t.......`	256	94
AF311939.1	Human coxsackievirus B4 strain E2 variant, complete genome	240	`.....t.............`	258	94
AF328683.1	Human coxsackievirus B4 polyprotein-like gene, complete sequence	241	`.....t.............`	259	94
AY302546.1	Human echovirus 20 strain JV-1 complete genome	238	`.................g.`	256	94
AY302549.1	Human echovirus 25 strain JV-4 complete genome	237	`.....t.............`	255	94
AY302552.1	Human echovirus 29 strain JV-10 complete genome	238	`.................g.`	256	94
AY302554.1	Human echovirus 31 strain Caldwell complete genome	237	`.................g.`	255	94
AY302557.1	Human echovirus 4 strain Pesacek complete genome	238	`.................g.`	256	94
AY843298.1	Human enterovirus 80 strain USA/CA67-10387, complete genome	239	`.................g.`	257	94
AY843307.1	Human enterovirus 97 strain BAN99-10355, complete genome	238	`.................g.`	256	94
DQ480420.1	Human coxsackievirus B4 strain Tuscany, complete genome	239	`.................g.`	257	94
AY421765.1	Human coxsackievirus A7 strain Parker, complete genome	238	`...a...............`	256	94
AY421766.1	Human coxsackievirus A8 strain Donovan, complete genome	239	`.................g.`	257	94
DQ341355.1	Human enterovirus 71 isolate 06-KOR-00, complete genome	238	`.................g.`	256	94
DQ341356.1	Human enterovirus 71 isolate 03-KOR-00, complete genome	238	`.................g.`	256	94
DQ341358.1	Human enterovirus 71 isolate S40221-SAR-00, complete genome	238	`.................g.`	256	94
DQ341359.1	Human enterovirus 71 isolate S10862-SAR-98, complete genome	238	`.................g.`	256	94
DQ341360.1	Human enterovirus 71 isolate J115-MAL-01, complete genome	237	`.................g.`	255	94
DQ341361.1	Human enterovirus 71 isolate 1M-AUS-12-00, complete genome	238	`.................g.`	256	94
DQ341363.1	Human enterovirus 71 isolate S19841-SAR-03, complete genome	241	`.....t.............`	259	94
DQ452074.1	Human enterovirus 71 strain 804/NO/03, complete genome	239	`.................g.`	257	94
EU414334.1	Human enterovirus 71 strain PLday4-CH-06, complete genome	237	`.................g.`	255	94
EU414335.1	Human enterovirus 71 strain PLday1-CH-06, complete genome	237	`.................g.`	255	94
AB550340.1	Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org	238	`.................g.`	256	94
AB550341.1	Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS	238	`.................g.`	256	94
AB575935.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 480	182	`.................g.`	200	94
AB575936.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 961	177	`.................g.`	195	94
AB575937.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 141	150	`.................g.`	168	94
AF083069.1	Echovirus 5, complete genome	239	`................___`	254	84
AF465518.1	Human echovirus 2 strain Cornelis, complete genome	237	`................___`	252	84
AY302542.1	Human echovirus 16 strain Harrington complete genome	238	`................___`	253	84
AY302545.1	Human echovirus 2 strain Cornelis complete genome	237	`................___`	252	84
HM775882.1	Human echovirus 5 isolate Kor06-ECV5-253cn, complete genome	237	`................___`	252	84
D00627.1	CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G	239	`.......g.........g.`	257	89
X80059.1	Echo Virus 11 genomic DNA	240	`...a.............g.`	258	89
X84981.1	Echovirus 9 (strain Hill), complete genome	237	`.....t...........g.`	255	89
AF230973.1	AF230973 Enterovirus Yanbian 96-83csf, complete genome	243	`.......g.........g.`	261	89
AF268065.1	Swine vesicular disease virus strain NET/1/92, complete genome	238	`...a.............g.`	256	89
AF241359.1	Enterovirus CA55-1988, complete genome	240	`.......g.........g.`	258	89
AY036579.1	Human echovirus 7 strain Wallace polyprotein gene, complete cds	238	`.......g.........g.`	256	89
AF317694.1	Human echovirus 18 strain Metcalf polyprotein gene, complete cds	236	`.....t...........g.`	254	89
AF465516.1	Human echovirus 7 strain Wallace, complete genome	238	`.......g.........g.`	256	89
AY302539.1	Human echovirus 13 strain Del Carmen complete genome	238	`.......t.........g.`	256	89
AY302544.1	Human echovirus 19 strain Burke complete genome	238	`.....t...........g.`	256	89
AY302547.1	Human echovirus 21 strain Farina complete genome	238	`.......g.........g.`	256	89
AY302551.1	Human echovirus 27 strain Bacon complete genome	240	`.....t...........g.`	258	89
AY302555.1	Human echovirus 32 strain PR-10 complete genome	228	`.....t...........g.`	246	89
AY302559.1	Human echovirus 7 strain Wallace complete genome	238	`.......g.........g.`	256	89
AY302560.1	Enterovirus 69 strain Toluca-1 complete genome	240	`...a.............g.`	258	89
AY843297.1	Human enterovirus 79 strain USA/CA79-10384, complete genome	240	`.....t...........g.`	258	89
AY843302.1	Human enterovirus 77 strain USA/TX97-10394, complete genome	245	`...a....t..........`	263	89
AY843308.1	Human enterovirus 101 strain CIV03-10361, complete genome	238	`.....t...........g.`	256	89
EF371880.2	Human enterovirus B isolate SE-03-78616, complete genome	239	`...a....t..........`	257	89
FJ172447.1	Human echovirus 4 strain AUS250G, complete genome	243	`...a.............g.`	261	89
U22521.1	ETU22521 Human enterovirus 71 polyprotein gene, complete cds	239	`.....t...........g.`	257	89
U22522.1	ETU22522 Human enterovirus 71 polyprotein gene, complete cds	240	`.....t...........g.`	258	89
AF119795.2	Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds	237	`...a.............g.`	255	89
AF136379.1	Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds	239	`...a.............g.`	257	89
AF119796.3	Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds	237	`...a.............g.`	255	89
AF176044.1	Enterovirus 71 polyprotein gene, complete cds	240	`...a.............g.`	258	89
AF177911.1	Coxsackievirus A16 polyprotein gene, complete cds	242	`.....t...........g.`	260	89
AF302996.1	Enterovirus 71 strain SHZH98 polyprotein gene, complete cds	239	`.....t..........g..`	257	89
AF304457.1	Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds	239	`...a.............g.`	257	89
AF304458.1	Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds	239	`...a.............g.`	257	89
AF304459.1	Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds	239	`...a.............g.`	257	89
AF316321.2	Enterovirus 5865/sin/000009, complete genome	240	`.....t...........g.`	258	89
AF352027.1	Enterovirus 5666/sin/002209, complete genome	240	`.....t...........g.`	258	89
AY465356.1	Human enterovirus 71 strain SHZH03, complete genome	236	`.....t..........g..`	254	89
AY421761.1	Human coxsackievirus A3 strain Olson, complete genome	238	`.....t...........g.`	256	89
AY421762.1	Human coxsackievirus A4 strain High Point, complete genome	243	`.....t...........g.`	261	89
AY421763.1	Human coxsackievirus A5 strain Swartz, complete genome	237	`.....t...........g.`	255	89
AY421764.1	Human coxsackievirus A6 strain Gdula, complete genome	241	`.....t...........g.`	259	89
AY421767.1	Human coxsackievirus A10 strain Kowalik, complete genome	238	`.....t...........g.`	256	89
AY421768.1	Human coxsackievirus A12 strain Texas-12, complete genome	241	`.....t...........g.`	259	89
AY421769.1	Human coxsackievirus A14 strain G-14, complete genome	245	`.....t...........g.`	263	89
AJ586873.1	Human enterovirus 71 gene for polyprotein, isolate EV71/9/97/SHA89	240	`.....t...........g.`	258	89
AY790926.1	Human coxsackievirus A16 strain shzh00-1, complete genome	242	`.....t...........g.`	260	89
AB204852.1	Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR	239	`.....t...........g.`	257	89
AB204853.1	Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts	239	`.....t...........g.`	257	89
DQ060149.1	Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome	239	`...a.............g.`	257	89
DQ341354.1	Human enterovirus 71 isolate 3799-SIN-98, complete genome	241	`.....t...........g.`	259	89
DQ341357.1	Human enterovirus 71 isolate 7F-AUS-6-99, complete genome	238	`...a.............g.`	256	89
DQ341362.1	Human enterovirus 71 isolate SB12736-SAR-03, complete genome	241	`.....t...........g.`	259	89
DQ341364.1	Human enterovirus 71 isolate 5511-SIN-00, complete genome	241	`.....t...........g.`	259	89
DQ341365.1	Human enterovirus 71 isolate PP37-MAL-01, complete genome	240	`.....t...........g.`	258	89
DQ341366.1	Human enterovirus 71 isolate SB2864-SAR-00, complete genome	240	`.....t...........g.`	258	89
DQ341367.1	Human enterovirus 71 isolate MY821-3-SAR-97, complete genome	240	`.....t...........g.`	258	89
DQ341368.1	Human enterovirus 71 isolate MY104-9-SAR-97, complete genome	240	`.....t...........g.`	258	89
DQ381846.1	Human enterovirus 71 strain 6F/AUS/6/99, complete genome	238	`...a.............g.`	256	89
AM396584.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P	237	`...a.............g.`	255	89
AM396585.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P	237	`...a.............g.`	255	89
AM396586.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/	240	`.....t...........g.`	258	89
AM396587.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate UH1/P	240	`.....t...........g.`	258	89
AM396588.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/	231	`.....t...........g.`	249	89
EF063152.1	Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd	238	`.......g.........g.`	256	89
EF373575.1	Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet	242	`.....t...........g.`	260	89
EF667343.1	Simian enterovirus 46 strain RNM5, complete genome	236	`.....t.c...........`	254	89
EU131776.1	Human enterovirus 71 strain N3340-TW-02, complete genome	236	`.....t..........g..`	254	89
EU262658.1	Human coxsackievirus A16 strain shzh05-1, complete genome	242	`.....t...........g.`	260	89
EU364841.1	Human enterovirus 71 strain 26M/AUS/4/99, complete genome	241	`.....t...........g.`	259	89
EU376004.1	Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome	241	`.....t...........g.`	259	89
EU376005.1	Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome	241	`.....t...........g.`	259	89
EU812514.1	Human coxsackievirus A16 strain FY18 from China, complete genome	244	`.....t...........g.`	262	89
FJ172159.1	Human enterovirus 71 isolate NUH0075/SIN/08, complete genome	199	`...a.............g.`	217	89
FJ198212.1	Human coxsackievirus A16 strain GZ08, complete genome	242	`.....t...........g.`	260	89
FJ461781.1	Human enterovirus 71 isolate NUH0083/SIN/08, complete genome	205	`.....t...........g.`	223	89
AB482183.1	Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya	241	`.....t...........g.`	259	89
GU434678.1	Human enterovirus 71 strain EV71-Hubei-09-China, complete genome	239	`.....t...........g.`	257	89
GQ279368.1	Human coxsackievirus A16 strain SZ/HK08-3, complete genome	242	`.....t...........g.`	260	89
GQ279371.1	Human coxsackievirus A16 strain SZ/HK08-7, complete genome	242	`.....t...........g.`	260	89
HQ189392.1	Human enterovirus 71 isolate HUN/1978, complete genome	241	`.....t...........g.`	259	89
HQ407557.1	Human enterovirus 71 strain LN009, complete genome	236	`.....t..........g..`	254	89
AB550332.1	Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org	238	`...a.............g.`	256	89
AB550333.1	Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1	238	`...a.............g.`	256	89
AB550336.1	Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-o	241	`.....t...........g.`	259	89
AB550337.1	Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-L	241	`.....t...........g.`	259	89
AB575911.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100	176	`.....t...........g.`	194	89
AB575912.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 108	189	`.....t...........g.`	207	89
AB575913.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 119	166	`.....t...........g.`	184	89
AB575914.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 170	175	`.....t...........g.`	193	89
AB575915.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 944	186	`.....t...........g.`	204	89
AB575916.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 161	177	`.....t...........g.`	195	89
AB575917.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101	192	`.....t...........g.`	210	89
AB575918.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 205	177	`.....t...........g.`	195	89
AB575923.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 202	183	`.....t...........g.`	201	89
AB575927.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 113	176	`.....t...........g.`	194	89
AB575928.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 115	177	`.....t...........g.`	195	89
AB575938.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100	211	`...a.............g.`	229	89
AB575939.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 365	169	`...a.............g.`	187	89
AB575941.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 248	177	`...a.............g.`	195	89
AB575942.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 369	172	`...a.............g.`	190	89
HQ891929.1	Human enterovirus 71 strain Shanghai 118-2009, complete genome	237	`.....t..........g..`	255	89
HQ269389.1	Human coxsackievirus A16 isolate XM-CA16-3560, complete genome	242	`.....t...........g.`	260	89
HQ423141.1	Human coxsackievirus A16 strain KMM/08, complete genome	242	`.....t...........g.`	260	89
HQ456305.1	Human enterovirus A strain GZ2010-156, complete genome	236	`.....t..........g..`	254	89
HQ456307.1	Human enterovirus A strain GZ2010-120, complete genome	236	`.....t..........g..`	254	89
HQ456313.1	Human enterovirus A strain GZ2010-95, complete genome	236	`.....t..........g..`	254	89
AY186745.1	Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds	218	`...a............___`	233	78
AY186746.1	Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds	218	`...a............___`	233	78
AY186747.1	Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds	218	`...a............___`	233	78
AY186748.1	Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds	218	`...a............___`	233	78
DQ133458.1	Human enterovirus 71 strain 984 polyprotein gene, complete cds	236	`.....t..........___`	251	78
DQ133459.1	Human enterovirus 71 strain 1235 polyprotein gene, complete cds	236	`.....t..........___`	251	78
EF373576.1	Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet	236	`.....t..........___`	251	78
FJ194964.1	Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome	236	`.....t..........___`	251	78
GQ994989.1	Human enterovirus 71 strain Chongqing1-09-China, complete genome	237	`.....t..........___`	252	78
HQ423142.1	Human enterovirus 71 strain KMM/09, complete genome	236	`.....t..........___`	251	78
AF448783.1	Human poliovirus 2 strain EGY93-034, complete genome	236	`...ct............g.`	254	84
X67706.1	Coxsackievirus B5 complete genome	241	`...a.t...........g.`	259	84
X54521.1	Swine vesicular disease virus complete genomic RNA	238	`...a.t...........g.`	256	84
D16364.1	SVDMPS Swine vesicular disease virus gene for polyprotein, complete cd	238	`...a.t...........g.`	256	84
D00435.1	SVDG Swine vesicular disease virus (STRAIN H/3 '76) genomic RNA, compl	238	`...a.t...........g.`	256	84
AF162711.1	Echovirus 30 strain Bastianni, complete genome	240	`...a...g.........g.`	258	84
AF114383.1	Coxsackievirus B5 strain Faulkner, complete genome	239	`...a.t...........g.`	257	84
AF311938.1	Human echovirus 30 strain Bastianni, complete genome	240	`...a...g.........g.`	258	84
AY302540.1	Human echovirus 14 strain Tow complete genome	237	`...a...g.........g.`	255	84
AY302541.1	Human echovirus 15 strain CH 96-51 complete genome	239	`...a...g.........g.`	257	84
AY302550.1	Human echovirus 26 strain Coronel complete genome	237	`..ca.............g.`	255	84
AY302553.1	Human echovirus 3 strain Morrisey complete genome	239	`...a.t...........g.`	257	84
AY429470.1	Swine vesicular disease virus strain HK'70, complete genome	238	`...a.t...........g.`	256	84
AY843300.1	Human enterovirus 82 strain USA/CA64-10390, complete genome	241	`.....tg..........g.`	259	84
AJ849942.1	Human echovirus 3 gene for polyprotein, genomic RNA, strain PicoBank/	238	`.....tg..........g.`	256	84
EU887278.1	Swine vesicular disease virus SVDV01, complete genome	238	`...a.t...........g.`	256	84
EU887279.1	Swine vesicular disease virus SVDV02, complete genome	238	`...a.t...........g.`	256	84
EU887280.1	Swine vesicular disease virus SVDV03, complete genome	238	`...a.t...........g.`	256	84
EU887281.1	Swine vesicular disease virus SVDV04, complete genome	238	`...a.t...........g.`	256	84
EU887282.1	Swine vesicular disease virus SVDV, complete genome	238	`...a.t...........g.`	256	84
EF667344.1	Human enterovirus 92 strain RJG7, complete genome	236	`.....t.c.........g.`	254	84
AF326764.2	Simian enterovirus 46 strain OM22 (P15), complete genome	236	`.....tc..........g.`	254	84
AB469182.1	Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E	239	`...a.t...........g.`	257	84
AB469183.1	Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71	239	`...a.t...........g.`	257	84
AB550335.1	Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L	239	`...a.t...........g.`	257	84
AB575948.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101	195	`...a...g.........g.`	213	84
AB550334.1	Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o	239	`...ayt...........g.`	257	78
EF555645.1	Human enterovirus 102, complete genome	234	`...ct.g.g..........`	252	78
AB180070.1	Human poliovirus 1 gene for polyprotein, complete cds, isolate:Mindan	6176	`____...cg..........`	6162	68
AB180071.1	Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon-	6176	`____...cg..........`	6162	68
AB180072.1	Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon-	6176	`____...cg..........`	6162	68
AB180073.1	Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon-	6176	`____...cg..........`	6162	68
AJ276224.1	Human echovirus 11 genomic RNA for polyprotein	1051	`___..........a..___`	1039	63

VIRsiRNAdb

Database of Viral siRNA / shRNA