../../tmp/servers/virsirnadb/1564154144
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1812 | 1 | cgctagcactctggtatca | 19 | |
| M33854.1 | CXA3CG Coxsackievirus B3 (CVB3) complete genome | 44 | ................... | 62 | 100 |
| M16572.1 | CXA3G Coxsackievirus B3, complete genome | 44 | ................... | 62 | 100 |
| M88483.1 | CXAB3CG Coxsackievirus B3 mRNA, complete genome | 45 | ................... | 63 | 100 |
| U57056.1 | CXU57056 Coxsackievirus B3 Woodruff variant, complete genome | 45 | ................... | 63 | 100 |
| AF231763.1 | Coxsackievirus B3 strain 31-1-93, complete genome | 45 | ................... | 63 | 100 |
| AF231764.1 | Coxsackievirus B3 strain P, complete genome | 45 | ................... | 63 | 100 |
| AF231765.1 | Coxsackievirus B3 strain PD, complete genome | 45 | ................... | 63 | 100 |
| AY302548.1 | Human echovirus 24 strain DeCamp complete genome | 45 | ................... | 63 | 100 |
| AY302552.1 | Human echovirus 29 strain JV-10 complete genome | 45 | ................... | 63 | 100 |
| AY302556.1 | Human echovirus 33 strain Toluca-3 complete genome | 45 | ................... | 63 | 100 |
| AY752945.1 | Human coxsackievirus B3 strain 0, complete genome | 45 | ................... | 63 | 100 |
| AY752946.1 | Human coxsackievirus B3 strain 20, complete genome | 45 | ................... | 63 | 100 |
| AY896762.1 | Human enterovirus B strain CBV3-11059-99 from Uzbekistan polyprotein | 23 | ................... | 41 | 100 |
| AY896763.1 | Human enterovirus B strain CBV3-18219-02 from Moldova polyprotein gen | 23 | ................... | 41 | 100 |
| AY843301.1 | Human enterovirus 83 strain USA/CA76-10392, complete genome | 46 | ................... | 64 | 100 |
| EU147493.1 | Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds | 45 | ................... | 63 | 100 |
| AY752944.2 | Human coxsackievirus B3 strain 28, complete genome | 45 | ................... | 63 | 100 |
| AY421760.1 | Human coxsackievirus A2 strain Fleetwood, complete genome | 45 | ................... | 63 | 100 |
| AY697460.1 | Human enterovirus 90 polyprotein gene, complete cds | 48 | _.................. | 65 | 94 |
| AY697461.1 | Human enterovirus 91 polyprotein gene, complete cds | 46 | _.................. | 63 | 94 |
| AB192877.1 | Human enterovirus 90 genomic RNA, complete genome | 48 | _.................. | 65 | 94 |
| X54521.1 | Swine vesicular disease virus complete genomic RNA | 45 | .........a......... | 63 | 94 |
| D16364.1 | SVDMPS Swine vesicular disease virus gene for polyprotein, complete cd | 45 | .........a......... | 63 | 94 |
| X80059.1 | Echo Virus 11 genomic DNA | 45 | .........a......... | 63 | 94 |
| U16283.1 | E6U16283 Echovirus 6 lytic strain, complete genome | 44 | .........a......... | 62 | 94 |
| X92886.1 | Echovirus 9 (strain Barty), complete genome | 45 | .........a......... | 63 | 94 |
| AF114383.1 | Coxsackievirus B5 strain Faulkner, complete genome | 45 | ...c............... | 63 | 94 |
| AF241359.1 | Enterovirus CA55-1988, complete genome | 46 | .........a......... | 64 | 94 |
| AF317694.1 | Human echovirus 18 strain Metcalf polyprotein gene, complete cds | 45 | .................t. | 63 | 94 |
| AJ276224.1 | Human echovirus 11 genomic RNA for polyprotein | 45 | .........a......... | 63 | 94 |
| AF524866.1 | Human echovirus 9 strain Barty, complete genome | 45 | .........a......... | 63 | 94 |
| AY186745.1 | Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds | 25 | ..t................ | 43 | 94 |
| AY186746.1 | Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds | 25 | ..t................ | 43 | 94 |
| AY186747.1 | Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds | 25 | ..t................ | 43 | 94 |
| AY186748.1 | Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds | 25 | ..t................ | 43 | 94 |
| AF465517.1 | Human echovirus 6 strain Charles, complete genome | 45 | .........a......... | 63 | 94 |
| AF465518.1 | Human echovirus 2 strain Cornelis, complete genome | 45 | .................t. | 63 | 94 |
| AY302541.1 | Human echovirus 15 strain CH 96-51 complete genome | 45 | .................t. | 63 | 94 |
| AY302545.1 | Human echovirus 2 strain Cornelis complete genome | 45 | .................t. | 63 | 94 |
| AY302546.1 | Human echovirus 20 strain JV-1 complete genome | 45 | .................t. | 63 | 94 |
| AY302558.1 | Human echovirus 6 strain D'Amori complete genome | 45 | .........a......... | 63 | 94 |
| AY302560.1 | Enterovirus 69 strain Toluca-1 complete genome | 45 | .........a......... | 63 | 94 |
| AY429470.1 | Swine vesicular disease virus strain HK'70, complete genome | 45 | .........a......... | 63 | 94 |
| AY556057.1 | Enterovirus 74 strain USA/CA75-10213, complete genome | 45 | .........a......... | 63 | 94 |
| AY896765.1 | Human enterovirus B strain EV7-15936-01 from Azerbaijan polyprotein g | 23 | .........a......... | 41 | 94 |
| AY843305.1 | Human enterovirus 87 strain BAN01-10396, complete genome | 45 | .........a......... | 63 | 94 |
| AJ849942.1 | Human echovirus 3 gene for polyprotein, genomic RNA, strain PicoBank/ | 45 | .........a......... | 63 | 94 |
| DQ246620.1 | Human echovirus 30 strain Echo30/Zhejiang/17/03/CSF, complete genome | 45 | .........a......... | 63 | 94 |
| EU887278.1 | Swine vesicular disease virus SVDV01, complete genome | 45 | .........a......... | 63 | 94 |
| EU887279.1 | Swine vesicular disease virus SVDV02, complete genome | 45 | .........a......... | 63 | 94 |
| EU887280.1 | Swine vesicular disease virus SVDV03, complete genome | 45 | .........a......... | 63 | 94 |
| EU887281.1 | Swine vesicular disease virus SVDV04, complete genome | 45 | .........a......... | 63 | 94 |
| EU887282.1 | Swine vesicular disease virus SVDV, complete genome | 45 | .........a......... | 63 | 94 |
| AB426610.1 | Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601 | 45 | .........a......... | 63 | 94 |
| AB426611.1 | Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227 | 45 | .........a......... | 63 | 94 |
| AY697459.1 | Human enterovirus 89 polyprotein gene, complete cds | 45 | .........a......... | 63 | 94 |
| AF326764.2 | Simian enterovirus 46 strain OM22 (P15), complete genome | 45 | .................t. | 63 | 94 |
| AF039205.1 | Coxsackievirus B6 strain Schmitt, complete genome | 45 | .................__ | 61 | 89 |
| AF105342.1 | Coxsackievirus B6 strain Schmitt, complete genome | 45 | .................__ | 61 | 89 |
| AF114384.1 | Coxsackievirus B6 strain Schmitt, complete genome | 45 | .................__ | 61 | 89 |
| AY302543.1 | Human echovirus 17 strain CHHE-29 complete genome | 45 | .................__ | 61 | 89 |
| HM775882.1 | Human echovirus 5 isolate Kor06-ECV5-253cn, complete genome | 45 | .................__ | 61 | 89 |
| AY278553.1 | Human poliovirus 1 isolate P1W/Bar65 (19276), complete genome | 47 | _.....t............ | 64 | 89 |
| AJ544513.1 | Human poliovirus 2 gene for polyprotein, genomic RNA, isolate 102050 | 47 | _..........c....... | 64 | 89 |
| DQ890388.1 | Human poliovirus 2 strain PER8310769, complete genome | 47 | _..........c....... | 64 | 89 |
| EF555644.1 | Human enterovirus 99, complete genome | 47 | _.....t............ | 64 | 89 |
| EF555645.1 | Human enterovirus 102, complete genome | 47 | _.....t............ | 64 | 89 |
| X67706.1 | Coxsackievirus B5 complete genome | 45 | ................c._ | 62 | 89 |
| X84981.1 | Echovirus 9 (strain Hill), complete genome | 45 | ...c.............._ | 62 | 89 |
| X79047.1 | Echovirus type 12, prototype Travis wild type genome | 45 | .........a........_ | 62 | 89 |
| X77708.1 | Echovirus type 12, prototype Travis complete RNA genome | 45 | .........a........_ | 62 | 89 |
| AY302547.1 | Human echovirus 21 strain Farina complete genome | 45 | .........a........_ | 62 | 89 |
| AY302554.1 | Human echovirus 31 strain Caldwell complete genome | 44 | .........a........_ | 61 | 89 |
| AY875692.1 | Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome | 45 | .........a........_ | 62 | 89 |
| AY843297.1 | Human enterovirus 79 strain USA/CA79-10384, complete genome | 45 | .........a........_ | 62 | 89 |
| AB501330.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2 | 45 | .........a........_ | 62 | 89 |
| AB501331.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: I5(1)- | 45 | .........a........_ | 62 | 89 |
| AB501332.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: S3(1)- | 45 | .........a........_ | 62 | 89 |
| HM777023.1 | Human echovirus 18 isolate Kor05-ECV18-054cn, complete genome | 45 | .........a........_ | 62 | 89 |
| AF302996.1 | Enterovirus 71 strain SHZH98 polyprotein gene, complete cds | 45 | ................c._ | 62 | 89 |
| AY421763.1 | Human coxsackievirus A5 strain Swartz, complete genome | 45 | ...c.............._ | 62 | 89 |
| AY421767.1 | Human coxsackievirus A10 strain Kowalik, complete genome | 45 | ................c._ | 62 | 89 |
| AY773285.1 | Human enterovirus 90 isolate F950027, complete genome | 48 | _................t. | 65 | 89 |
| FJ606447.1 | Human enterovirus 71 strain BJ08-Z004-3, complete genome | 45 | ...a.............._ | 62 | 89 |
| FJ606448.1 | Human enterovirus 71 strain BJ08-Z011-4, complete genome | 45 | ...a.............._ | 62 | 89 |
| FJ606449.1 | Human enterovirus 71 strain BJ08-Z020-1, complete genome | 45 | ...a.............._ | 62 | 89 |
| FJ607338.1 | Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c | 44 | ...a.............._ | 61 | 89 |
| HM002489.1 | Human enterovirus 71 strain BJ398, complete genome | 45 | ................c._ | 62 | 89 |
| HQ426649.1 | Human enterovirus 71 strain 2010FJLY008, complete genome | 44 | ...a.............._ | 61 | 89 |
| HQ325852.1 | Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome | 46 | ...a.............._ | 63 | 89 |
| HQ891925.1 | Human enterovirus 71 strain Shanghai 36-2009, complete genome | 46 | ...a.............._ | 63 | 89 |
| HQ891926.1 | Human enterovirus 71 strain Shanghai 51-2009, complete genome | 46 | ...a.............._ | 63 | 89 |
| HQ456306.1 | Human enterovirus A strain GZ2010-134, complete genome | 45 | ...g.............._ | 62 | 89 |
| HQ456307.1 | Human enterovirus A strain GZ2010-120, complete genome | 45 | ...a.............._ | 62 | 89 |
| HQ456308.1 | Human enterovirus A strain GZ2010-118, complete genome | 45 | ...a.............._ | 62 | 89 |
| HQ456310.1 | Human enterovirus A strain GZ08-530, complete genome | 45 | ...a.............._ | 62 | 89 |
| HQ456313.1 | Human enterovirus A strain GZ2010-95, complete genome | 45 | ...a.............._ | 62 | 89 |
| JN001860.1 | Human enterovirus 71 strain NB/2010/01, complete genome | 45 | ................c._ | 62 | 89 |
| AY302549.1 | Human echovirus 25 strain JV-4 complete genome | 45 | ................___ | 60 | 84 |
| AF119795.2 | Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds | 44 | ................___ | 59 | 84 |
| AF136379.1 | Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds | 45 | ................___ | 60 | 84 |
| AF119796.3 | Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds | 44 | ................___ | 59 | 84 |
| AF176044.1 | Enterovirus 71 polyprotein gene, complete cds | 46 | ................___ | 61 | 84 |
| AF304457.1 | Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds | 45 | ................___ | 60 | 84 |
| AF304458.1 | Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds | 45 | ................___ | 60 | 84 |
| AF304459.1 | Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds | 45 | ................___ | 60 | 84 |
| AY421768.1 | Human coxsackievirus A12 strain Texas-12, complete genome | 45 | ................___ | 60 | 84 |
| DQ060149.1 | Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome | 45 | ................___ | 60 | 84 |
| D00627.1 | CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G | 46 | ..t......a......... | 64 | 89 |
| D00435.1 | SVDG Swine vesicular disease virus (STRAIN H/3 '76) genomic RNA, compl | 45 | ......t..a......... | 63 | 89 |
| AF085363.1 | Coxsackievirus B2 strain Ohio-1 polyprotein gene, complete cds | 45 | .........a.......t. | 63 | 89 |
| AF081485.1 | Coxsackievirus B2 strain Ohio, complete genome | 45 | .........a.......t. | 63 | 89 |
| AF029859.2 | Echovirus 1 (strain Farouk / ATCC VR-1038) polyprotein precursor, gen | 45 | ..t......a......... | 63 | 89 |
| AF230973.1 | AF230973 Enterovirus Yanbian 96-83csf, complete genome | 46 | ...c.....a......... | 64 | 89 |
| AY302539.1 | Human echovirus 13 strain Del Carmen complete genome | 45 | ...c.....a......... | 63 | 89 |
| AY302540.1 | Human echovirus 14 strain Tow complete genome | 45 | ...a.....a......... | 63 | 89 |
| AY302544.1 | Human echovirus 19 strain Burke complete genome | 45 | ...........c.....t. | 63 | 89 |
| AY302550.1 | Human echovirus 26 strain Coronel complete genome | 45 | .........a.c....... | 63 | 89 |
| AY302553.1 | Human echovirus 3 strain Morrisey complete genome | 45 | ...c.............t. | 63 | 89 |
| AY302557.1 | Human echovirus 4 strain Pesacek complete genome | 45 | .........c.......t. | 63 | 89 |
| AY556070.1 | Enterovirus 75 strain USA/OK85-10362, complete genome | 48 | ...c.....a......... | 66 | 89 |
| AY843298.1 | Human enterovirus 80 strain USA/CA67-10387, complete genome | 45 | ..tc............... | 63 | 89 |
| AY843304.1 | Human enterovirus 86 strain BAN00-10354, complete genome | 45 | .........a.......t. | 63 | 89 |
| AY843307.1 | Human enterovirus 97 strain BAN99-10355, complete genome | 45 | ...c.....a......... | 63 | 89 |
| AY843308.1 | Human enterovirus 101 strain CIV03-10361, complete genome | 45 | ...c.............t. | 63 | 89 |
| DQ534205.1 | Human echovirus 30 isolate 14916net87, complete genome | 45 | ...c.....a......... | 63 | 89 |
| DQ902712.1 | Human enterovirus 84 isolate CIV2003-10603, complete genome | 45 | ...c.....a......... | 63 | 89 |
| EF174468.1 | Human coxsackievirus B2 isolate KOR 04-243, complete genome | 45 | .........a.......t. | 63 | 89 |
| EF174469.1 | Human coxsackievirus B2 isolate KOR 04-279, complete genome | 45 | .........a.......t. | 63 | 89 |
| HM185055.1 | Human echovirus 6 strain Echo6/Henan/116/2008, complete genome | 46 | ..t......a......... | 64 | 89 |
| HM185056.1 | Human enterovirus B strain EVB/Henan/127/2008, complete genome | 23 | ..t......a......... | 41 | 89 |
| AY421761.1 | Human coxsackievirus A3 strain Olson, complete genome | 45 | .........a.......t. | 63 | 89 |
| AY421765.1 | Human coxsackievirus A7 strain Parker, complete genome | 46 | ..t..............t. | 64 | 89 |
| EF667343.1 | Simian enterovirus 46 strain RNM5, complete genome | 46 | ..t...t............ | 64 | 89 |
| EF667344.1 | Human enterovirus 92 strain RJG7, complete genome | 46 | ..t...t............ | 64 | 89 |
| X05690.1 | Coxsackievirus B4 complete genome | 45 | .........a.......__ | 61 | 84 |
| AJ493062.2 | Human enterovirus 77 gene for polyprotein, genomic RNA, isolate CF496 | 45 | .........a.......__ | 61 | 84 |
| AJ493062.2 | Human enterovirus 77 gene for polyprotein, genomic RNA, isolate CF496 | 1958 | ...........________ | 1948 | 57 |
| AJ577589.1 | Human echovirus 11, isolate HUN-1108, complete virion genome | 45 | ...c.............__ | 61 | 84 |
| AJ577590.1 | Human echovirus 11, isolate FIN-0666, complete virion genome | 45 | ...c.............__ | 61 | 84 |
| AJ577594.1 | Human echovirus 11, isolate ROU-9191, complete virion genome | 45 | ...c.............__ | 61 | 84 |
| AY843302.1 | Human enterovirus 77 strain USA/TX97-10394, complete genome | 47 | .........a.......__ | 63 | 84 |
| AY843303.1 | Human enterovirus 85 strain BAN00-10353, complete genome | 45 | .........a.......__ | 61 | 84 |
| AY843306.1 | Human enterovirus 88 strain BAN01-10398, complete genome | 45 | .........a.......__ | 61 | 84 |
| DQ480420.1 | Human coxsackievirus B4 strain Tuscany, complete genome | 45 | .........a.......__ | 61 | 84 |
| EF634316.1 | Human echovirus 11 strain D207, complete genome | 46 | ...c.............__ | 62 | 84 |
| FJ000001.1 | Human coxsackievirus B3 strain Fuyang19, complete genome | 45 | .........a.......__ | 61 | 84 |
| GQ141875.1 | Human coxsackievirus B3 strain Beijing0811, complete genome | 45 | .........a.......__ | 61 | 84 |
| GU109481.1 | Human coxsackievirus B3 strain SSM-CVB3, complete genome | 45 | .........a.......__ | 61 | 84 |
| AB501329.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2 | 45 | .........a.......__ | 61 | 84 |
| HM031191.1 | Human echovirus 25 strain HN-2, complete genome | 46 | ...c.............__ | 62 | 84 |
| AF316321.2 | Enterovirus 5865/sin/000009, complete genome | 44 | ...............____ | 58 | 78 |
| AF352027.1 | Enterovirus 5666/sin/002209, complete genome | 44 | ...............____ | 58 | 78 |
| AJ586873.1 | Human enterovirus 71 gene for polyprotein, isolate EV71/9/97/SHA89 | 44 | ...............____ | 58 | 78 |
| DQ341365.1 | Human enterovirus 71 isolate PP37-MAL-01, complete genome | 45 | ...............____ | 59 | 78 |
| DQ341366.1 | Human enterovirus 71 isolate SB2864-SAR-00, complete genome | 45 | ...............____ | 59 | 78 |
| AM396587.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate UH1/P | 44 | ...............____ | 58 | 78 |
| EF373575.1 | Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet | 46 | ...............____ | 60 | 78 |
| X04468.1 | Poliovirus type 3 strain 23127 complete genome | 47 | _.....t..a......... | 64 | 84 |
| X00595.1 | Poliovirus type 2 genome (strain Sabin 2 (P712, Ch, 2ab)) | 47 | _..........c.....t. | 64 | 84 |
| X00596.1 | Poliovirus type 3 mRNA (vaccine strain Sabin 3 (Leon 12a1b)) | 47 | _.....t..a......... | 64 | 84 |
| X00925.1 | Poliovirus type 3 leon 12 a1b sequence (P3/Leon 12 a1b) | 47 | _.....t..a......... | 64 | 84 |
| K01392.1 | POL3L37 Poliovirus P3/Leon/37 (type 3), complete genome | 47 | _.....t..a......... | 64 | 84 |
| AJ132960.1 | Human poliovirus 1, complete genome. Isolated from faeces of immunode | 47 | _..c..t............ | 64 | 84 |
| AJ132961.1 | Human poliovirus 1, complete genome. Isolated from an immunodeficient | 47 | _..c..t............ | 64 | 84 |
| AY184220.1 | Human poliovirus 2 strain Sabin 2, complete genome | 47 | _..........c.....t. | 64 | 84 |
| AY184221.1 | Human poliovirus 3 strain Sabin 3, complete genome | 47 | _.....t..a......... | 64 | 84 |
| AF541919.1 | Human poliovirus 3 isolate PV3/NOR/01/8 polyprotein mRNA, complete cd | 37 | _.....t..a......... | 54 | 84 |
| AY177685.1 | Human poliovirus 2, complete genome | 47 | _..........c.....t. | 64 | 84 |
| AY278549.1 | Human poliovirus 2 isolate P2S/Mog65-3 (20120), complete genome | 47 | _..........c.....t. | 64 | 84 |
| AY278550.1 | Human poliovirus 2 isolate P2S/Mog65-1 (20003), complete genome | 47 | _..........c.....t. | 64 | 84 |
| AY278551.1 | Human poliovirus 2 isolate P2S/Mog66-4 (21043), complete genome | 47 | _..........c.....t. | 64 | 84 |
| AY278552.1 | Human poliovirus 2 isolate P2S/Mog65-2 (20077), complete genome | 47 | _..........c.....t. | 64 | 84 |
| AF499641.1 | Human coxsackievirus A19 strain 8663, complete genome | 47 | _.....t..........t. | 64 | 84 |
| AF546702.1 | Human coxsackievirus A21 strain Kuykendall, complete genome | 47 | _.....t..........t. | 64 | 84 |
| AF546702.1 | Human coxsackievirus A21 strain Kuykendall, complete genome | 1308 | _______............ | 1297 | 63 |
| AF465515.1 | Human coxsackievirus A21 strain Kuykendall, complete genome | 47 | _.....t..........t. | 64 | 84 |
| AF465515.1 | Human coxsackievirus A21 strain Kuykendall, complete genome | 1308 | _______............ | 1297 | 63 |
| AB205395.1 | Human enterovirus C genomic RNA, complete genome, strain: Cambodia-02 | 47 | _.....t..a......... | 64 | 84 |
| DQ205099.1 | Human poliovirus 2 clone S2R9, complete genome | 47 | _..........c.....t. | 64 | 84 |
| DQ358078.1 | Human coxsackievirus A20 serotype CAV20a, complete genome | 47 | _.....t..........t. | 64 | 84 |
| AM084223.1 | Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA, | 47 | _..........c.....t. | 64 | 84 |
| AM084224.1 | Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA, | 47 | _..........c.....t. | 64 | 84 |
| AM084225.1 | Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA, | 47 | _..........c.....t. | 64 | 84 |
| DQ890385.1 | Human poliovirus 2 strain NIE0210766, complete genome | 47 | _..........c.....t. | 64 | 84 |
| DQ890387.1 | Human poliovirus 2 strain USA9810768, complete genome | 47 | _..........c.....t. | 64 | 84 |
| EF456707.1 | Human poliovirus 3 isolate K/2002 polyprotein gene, complete cds | 7 | _.....t..a......... | 24 | 84 |
| AM884184.1 | Human poliovirus 2, complete genome, genomic RNA, isolate VDPV MAD005 | 47 | _..........c.....t. | 64 | 84 |
| AM884185.1 | Human poliovirus 2, complete genome, genomic RNA, isolate VDPV MAD006 | 47 | _..........c.....t. | 64 | 84 |
| FJ898290.1 | Human poliovirus 2 strain Sabine 2 isolate CHN3024/HN/CHN/1999, compl | 47 | _..........c.....t. | 64 | 84 |
| HM107832.1 | Human poliovirus 2 isolate CHN1054, complete genome | 47 | _..........c.....t. | 64 | 84 |
| HM107833.1 | Human poliovirus 2 isolate CHN1078, complete genome | 47 | _..........c.....t. | 64 | 84 |
| HM107834.1 | Human poliovirus 2 isolate CHN3219, complete genome | 47 | _..........c.....t. | 64 | 84 |
| HM107835.1 | Human poliovirus 2 isolate CHN8316, complete genome | 47 | _..........c.....t. | 64 | 84 |
| AY465356.1 | Human enterovirus 71 strain SHZH03, complete genome | 44 | ...a............c._ | 61 | 84 |
| DQ133458.1 | Human enterovirus 71 strain 984 polyprotein gene, complete cds | 45 | ...a............c._ | 62 | 84 |
| EF373576.1 | Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet | 45 | ...a............c._ | 62 | 84 |
| EU703813.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete | 45 | ...a............c._ | 62 | 84 |
| EU812515.1 | Human enterovirus 71 strain FY23 from China, complete genome | 47 | ...a............c._ | 64 | 84 |
| FJ158601.1 | Human enterovirus 71 isolate DTID/ZJU-74, complete genome | 45 | ...a............c._ | 62 | 84 |
| FJ194965.1 | Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome | 45 | ...a............c._ | 62 | 84 |
| FJ360544.1 | Human enterovirus 71 isolate GZ-08-01, complete genome | 44 | ...g............c._ | 61 | 84 |
| FJ360545.1 | Human enterovirus 71 isolate GZ-08-02, complete genome | 44 | ...a............c._ | 61 | 84 |
| FJ360546.1 | Human enterovirus 71 isolate GZ-08-03, complete genome | 44 | ...a............c._ | 61 | 84 |
| FJ439769.1 | Human enterovirus 71 strain Fuyang-0805, complete genome | 45 | ...a............c._ | 62 | 84 |
| FJ606450.1 | Human enterovirus 71 strain BJ08-Z025-5, complete genome | 45 | ...a............c._ | 62 | 84 |
| FJ713137.1 | Human enterovirus 71 strain Shanghai 036-2009, complete genome | 46 | ...a............c._ | 63 | 84 |
| FJ828519.1 | Human enterovirus 71 isolate BJ08, complete genome | 23 | ...a............c._ | 40 | 84 |
| FJ607334.1 | Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g | 44 | ...a............c._ | 61 | 84 |
| FJ607335.1 | Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g | 44 | ...a............c._ | 61 | 84 |
| FJ607336.1 | Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete | 44 | ...g............c._ | 61 | 84 |
| FJ607337.1 | Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co | 44 | ...a............c._ | 61 | 84 |
| GQ892830.1 | Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome | 45 | ...a............c._ | 62 | 84 |
| GQ994989.1 | Human enterovirus 71 strain Chongqing1-09-China, complete genome | 45 | ...a............c._ | 62 | 84 |
| GQ994990.1 | Human enterovirus 71 strain Chongqing2-09-China, complete genome | 45 | ...a............c._ | 62 | 84 |
| GQ994991.1 | Human enterovirus 71 strain Chongqing3-09-China, complete genome | 45 | ...g............c._ | 62 | 84 |
| GQ994992.1 | Human enterovirus 71 strain Henan2-09-China, complete genome | 38 | ...a............c._ | 55 | 84 |
| GU366191.1 | Human enterovirus 71 strain Henan10-08-China, complete genome | 44 | ...a............c._ | 61 | 84 |
| GU396280.1 | Human enterovirus 71 isolate EV71/Lanzhou01, complete genome | 45 | ...a............c._ | 62 | 84 |
| GU459070.1 | Human enterovirus 71 isolate FY23-K12, complete genome | 47 | ...a............c._ | 64 | 84 |
| GU459071.1 | Human enterovirus 71 isolate FY23-K14, complete genome | 45 | ...a............c._ | 62 | 84 |
| HM003207.1 | Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome | 45 | ...a............c._ | 62 | 84 |
| GQ279369.1 | Human enterovirus 71 strain SZ/HK08-5, complete genome | 45 | ...a............c._ | 62 | 84 |
| GQ279370.1 | Human enterovirus 71 strain SZ/HK08-6, complete genome | 45 | ...a............c._ | 62 | 84 |
| HM002484.1 | Human enterovirus 71 strain BJ67, complete genome | 45 | ...a............c._ | 62 | 84 |
| HM002485.1 | Human enterovirus 71 strain BJ97, complete genome | 45 | ...a............c._ | 62 | 84 |
| HM002486.1 | Human enterovirus 71 strain BJ110, complete genome | 45 | ...a............c._ | 62 | 84 |
| HM002487.1 | Human enterovirus 71 strain BJ303, complete genome | 45 | ...a............c._ | 62 | 84 |
| HM002488.1 | Human enterovirus 71 strain BJ366, complete genome | 45 | ...a............c._ | 62 | 84 |
| HM053669.1 | Human enterovirus 71 strain BJ293, complete genome | 45 | ...a............c._ | 62 | 84 |
| HM053670.1 | Human enterovirus 71 strain BJ393, complete genome | 45 | ...g............c._ | 62 | 84 |
| HM053671.1 | Human enterovirus 71 strain BJ462, complete genome | 45 | ...a............c._ | 62 | 84 |
| HQ407557.1 | Human enterovirus 71 strain LN009, complete genome | 45 | ...a............c._ | 62 | 84 |
| AB550338.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 45 | ...a............c._ | 62 | 84 |
| AB550339.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 45 | ...a............c._ | 62 | 84 |
| HQ891923.1 | Human enterovirus 71 strain Shanghai 27-2009, complete genome | 46 | ...a............c._ | 63 | 84 |
| HQ891924.1 | Human enterovirus 71 strain Shanghai 28-2009, complete genome | 46 | ...a............c._ | 63 | 84 |
| HQ891927.1 | Human enterovirus 71 strain Shanghai 64-2009, complete genome | 46 | ...a............c._ | 63 | 84 |
| HQ891928.1 | Human enterovirus 71 strain Shanghai 117-2009, complete genome | 46 | ...a............c._ | 63 | 84 |
| HQ891929.1 | Human enterovirus 71 strain Shanghai 118-2009, complete genome | 46 | ...a............c._ | 63 | 84 |
| HQ400942.1 | Human enterovirus 71 HZ08/Hangzhou/2008, complete genome | 45 | ...a............c._ | 62 | 84 |
| HQ456305.1 | Human enterovirus A strain GZ2010-156, complete genome | 45 | ...a............c._ | 62 | 84 |
| HQ456311.1 | Human enterovirus A strain GZ08-522, complete genome | 45 | ...a............c._ | 62 | 84 |
| HQ456312.1 | Human enterovirus A strain GZ08-520, complete genome | 45 | ...a............c._ | 62 | 84 |
| HQ611148.1 | Human enterovirus 71 strain AH08/06, complete genome | 45 | ...a............c._ | 62 | 84 |
| DQ341355.1 | Human enterovirus 71 isolate 06-KOR-00, complete genome | 45 | ...c............___ | 60 | 78 |
| DQ341356.1 | Human enterovirus 71 isolate 03-KOR-00, complete genome | 45 | ...c............___ | 60 | 78 |
| DQ341357.1 | Human enterovirus 71 isolate 7F-AUS-6-99, complete genome | 45 | ..............c.___ | 60 | 78 |
| DQ381846.1 | Human enterovirus 71 strain 6F/AUS/6/99, complete genome | 45 | ..............c.___ | 60 | 78 |
| AM396584.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 44 | ..............c.___ | 59 | 78 |
| AM396585.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 44 | ..............c.___ | 59 | 78 |
| FJ172159.1 | Human enterovirus 71 isolate NUH0075/SIN/08, complete genome | 6 | ..............c.___ | 21 | 78 |
| FJ194964.1 | Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome | 45 | ...a............___ | 60 | 78 |
| AB550332.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org | 45 | ..............c.___ | 60 | 78 |
| AB550333.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 | 45 | ..............c.___ | 60 | 78 |
| AB575948.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101 | 3 | ..............c.___ | 18 | 78 |
| HQ423142.1 | Human enterovirus 71 strain KMM/09, complete genome | 45 | ...a............___ | 60 | 78 |
| HQ423143.1 | Human enterovirus 71 strain KM186/09, complete genome | 45 | ...a............___ | 60 | 78 |
| DQ341362.1 | Human enterovirus 71 isolate SB12736-SAR-03, complete genome | 46 | _..............____ | 59 | 73 |
| DQ341363.1 | Human enterovirus 71 isolate S19841-SAR-03, complete genome | 46 | _..............____ | 59 | 73 |
| DQ341364.1 | Human enterovirus 71 isolate 5511-SIN-00, complete genome | 46 | _..............____ | 59 | 73 |
| FJ461781.1 | Human enterovirus 71 isolate NUH0083/SIN/08, complete genome | 10 | _..............____ | 23 | 73 |
| AY036579.1 | Human echovirus 7 strain Wallace polyprotein gene, complete cds | 45 | ..tc.....c......... | 63 | 84 |
| AF465516.1 | Human echovirus 7 strain Wallace, complete genome | 45 | ..tc.....c......... | 63 | 84 |
| AY302559.1 | Human echovirus 7 strain Wallace complete genome | 45 | ..tc.....c......... | 63 | 84 |
| EU144042.1 | Human coxsackievirus B3 isolate CVB3-MCH polyprotein gene, complete c | 45 | ...c....ta......... | 63 | 84 |
| FJ172447.1 | Human echovirus 4 strain AUS250G, complete genome | 45 | ..tc.....a......... | 63 | 84 |
| U22522.1 | ETU22522 Human enterovirus 71 polyprotein gene, complete cds | 44 | .............a.t.t. | 62 | 84 |
| AY697458.1 | Human enterovirus 76 polyprotein gene, complete cds | 46 | .........a.c.....t. | 64 | 84 |
| AB482183.1 | Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya | 45 | .............a.t.t. | 63 | 84 |
| HQ189392.1 | Human enterovirus 71 isolate HUN/1978, complete genome | 45 | .............a.t.t. | 63 | 84 |
| AB550336.1 | Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-o | 45 | .............a.tc.. | 63 | 84 |
| AB550337.1 | Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-L | 45 | .............a.tc.. | 63 | 84 |
| FJ357838.1 | Human coxsackievirus B3 strain GZ803, complete genome | 45 | .........a.c.....__ | 61 | 78 |
| AF405669.1 | Human poliovirus 1 isolate HAI00003, complete genome | 4030 | _.........g.....___ | 4016 | 73 |
| DQ341354.1 | Human enterovirus 71 isolate 3799-SIN-98, complete genome | 45 | .............a.____ | 59 | 73 |
| DQ341367.1 | Human enterovirus 71 isolate MY821-3-SAR-97, complete genome | 45 | .............a.____ | 59 | 73 |
| DQ341368.1 | Human enterovirus 71 isolate MY104-9-SAR-97, complete genome | 45 | .............a.____ | 59 | 73 |
| AM396586.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 44 | .............a.____ | 58 | 73 |
| AM396588.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 35 | .............a.____ | 49 | 73 |
| EU364841.1 | Human enterovirus 71 strain 26M/AUS/4/99, complete genome | 45 | .............a.____ | 59 | 73 |
| EU376004.1 | Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome | 45 | .............a.____ | 59 | 73 |
| EU376005.1 | Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome | 45 | .............a.____ | 59 | 73 |
| EU812514.1 | Human coxsackievirus A16 strain FY18 from China, complete genome | 46 | .............a.____ | 60 | 73 |
| AB469182.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E | 45 | .............a.____ | 59 | 73 |
| AB469183.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71 | 45 | .............a.____ | 59 | 73 |
| AB550334.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o | 45 | .............a.____ | 59 | 73 |
| AB550335.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L | 45 | .............a.____ | 59 | 73 |
| AB575938.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100 | 21 | ___.............___ | 33 | 68 |
| D90457.1 | CXA24CG Human coxsackievirus A24 DNA, complete genome | 47 | _..c..t..a......... | 64 | 78 |
| AF499643.1 | Human coxsackievirus A22 strain Chulman, complete genome | 46 | _..c..t..........t. | 63 | 78 |
| AF111984.2 | Human poliovirus 1 isolate CHN-Jiangxi/89-1, complete genome | 47 | _..c..t.........c.. | 64 | 78 |
| FM955278.1 | Human coxsackievirus A17, complete genome, genomic RNA, isolate cCA17 | 47 | _..c..t..a......... | 64 | 78 |
| AY421764.1 | Human coxsackievirus A6 strain Gdula, complete genome | 45 | .........a...a.t.._ | 62 | 78 |
| AY421766.1 | Human coxsackievirus A8 strain Donovan, complete genome | 45 | ..tc............c._ | 62 | 78 |
| DQ133459.1 | Human enterovirus 71 strain 1235 polyprotein gene, complete cds | 45 | ...a..........c.c._ | 62 | 78 |
| EU703812.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete | 45 | ...a..........c.c._ | 62 | 78 |
| EU703814.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete | 45 | ...a..........c.c._ | 62 | 78 |
| HQ188292.1 | Human enterovirus 71 strain Fuyang-0805a, complete genome | 48 | ...a..........c.c._ | 65 | 78 |
| HQ456309.1 | Human enterovirus A strain GZ08-831, complete genome | 45 | ...a..........c.c._ | 62 | 78 |
| AJ293918.1 | Human poliovirus type 3 complete genome, live-attenuated strain USOL- | 47 | _..c..t..........__ | 62 | 73 |
| AF499635.1 | Human coxsackievirus A1 strain Tompkins, complete genome | 47 | _..c..t..........__ | 62 | 73 |
| DQ341358.1 | Human enterovirus 71 isolate S40221-SAR-00, complete genome | 45 | ..tc............___ | 60 | 73 |
| DQ341359.1 | Human enterovirus 71 isolate S10862-SAR-98, complete genome | 45 | ..tc............___ | 60 | 73 |
| DQ341360.1 | Human enterovirus 71 isolate J115-MAL-01, complete genome | 45 | ..tc............___ | 60 | 73 |
| DQ341361.1 | Human enterovirus 71 isolate 1M-AUS-12-00, complete genome | 45 | ..tc............___ | 60 | 73 |
| DQ452074.1 | Human enterovirus 71 strain 804/NO/03, complete genome | 45 | ..tc............___ | 60 | 73 |
| EF063152.1 | Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd | 45 | ..tc............___ | 60 | 73 |
| EU131776.1 | Human enterovirus 71 strain N3340-TW-02, complete genome | 45 | ...a..g.........___ | 60 | 73 |
| EU414334.1 | Human enterovirus 71 strain PLday4-CH-06, complete genome | 44 | ..tc............___ | 59 | 73 |
| EU414335.1 | Human enterovirus 71 strain PLday1-CH-06, complete genome | 44 | ..tc............___ | 59 | 73 |
| AB550340.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org | 45 | ..tc............___ | 60 | 73 |
| AB550341.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS | 45 | ..tc............___ | 60 | 73 |
| AY421762.1 | Human coxsackievirus A4 strain High Point, complete genome | 46 | .........a...a.t.t. | 64 | 78 |
| AF111953.2 | Human poliovirus 1 isolate CHN-Hebei/91-2, complete genome | 47 | _..c..t.........___ | 61 | 68 |
| AF111961.2 | Human poliovirus 1 isolate CHN-Guangdong/92-2, complete genome | 47 | _..c..t.........___ | 61 | 68 |
| AF111966.2 | Human poliovirus 1 isolate CHN-Hainan/93-2, complete genome | 47 | _..c..t.........___ | 61 | 68 |
| AF111981.2 | Human poliovirus 1 isolate CHN-Fujian/93-8, complete genome | 47 | _..c..t.........___ | 61 | 68 |
| AF111982.2 | Human poliovirus 1 isolate CHN-Yunnan/92, complete genome | 47 | _..c..t.........___ | 61 | 68 |
| AF111983.3 | Human poliovirus 1 isolate CHN-Henan/91-3, complete genome | 47 | _..c..t.........___ | 61 | 68 |
| AB180070.1 | Human poliovirus 1 gene for polyprotein, complete cds, isolate:Mindan | 4030 | ..........g.a..____ | 4016 | 68 |
| AB180071.1 | Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon- | 4030 | ..........g.a..____ | 4016 | 68 |
| AB180072.1 | Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon- | 4030 | ..........g.a..____ | 4016 | 68 |
| AB180073.1 | Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon- | 4030 | ..........g.a..____ | 4016 | 68 |
| AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 45 | .........a...a.____ | 59 | 68 |
| AY421769.1 | Human coxsackievirus A14 strain G-14, complete genome | 45 | .........a...a.____ | 59 | 68 |
| AY790926.1 | Human coxsackievirus A16 strain shzh00-1, complete genome | 45 | .........a...a.____ | 59 | 68 |
| EU262658.1 | Human coxsackievirus A16 strain shzh05-1, complete genome | 45 | .........a...a.____ | 59 | 68 |
| FJ198212.1 | Human coxsackievirus A16 strain GZ08, complete genome | 45 | .........a...a.____ | 59 | 68 |
| GQ279368.1 | Human coxsackievirus A16 strain SZ/HK08-3, complete genome | 45 | .........a...a.____ | 59 | 68 |
| GQ279371.1 | Human coxsackievirus A16 strain SZ/HK08-7, complete genome | 45 | .........a...a.____ | 59 | 68 |
| HQ269389.1 | Human coxsackievirus A16 isolate XM-CA16-3560, complete genome | 45 | .........a...a.____ | 59 | 68 |
| HQ423141.1 | Human coxsackievirus A16 strain KMM/08, complete genome | 45 | .........a...a.____ | 59 | 68 |
| AY673831.1 | Human coxsackievirus B3 strain GA, complete genome | 5171 | ________........... | 5161 | 57 |