VIRsiRNAdb

../../tmp/servers/virsirnadb/1672839656
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi1813	1	`cggtacctttgtgcgcctg`	19
X00595.1	Poliovirus type 2 genome (strain Sabin 2 (P712, Ch, 2ab))	65	`...................`	83	100
AF111984.2	Human poliovirus 1 isolate CHN-Jiangxi/89-1, complete genome	65	`...................`	83	100
X67706.1	Coxsackievirus B5 complete genome	64	`...................`	82	100
X05690.1	Coxsackievirus B4 complete genome	64	`...................`	82	100
X05690.1	Coxsackievirus B4 complete genome	6855	`___.........a.a..._`	6841	68
X54521.1	Swine vesicular disease virus complete genomic RNA	64	`...................`	82	100
M33854.1	CXA3CG Coxsackievirus B3 (CVB3) complete genome	63	`...................`	81	100
M16572.1	CXA3G Coxsackievirus B3, complete genome	63	`...................`	81	100
M88483.1	CXAB3CG Coxsackievirus B3 mRNA, complete genome	64	`...................`	82	100
D16364.1	SVDMPS Swine vesicular disease virus gene for polyprotein, complete cd	64	`...................`	82	100
D16364.1	SVDMPS Swine vesicular disease virus gene for polyprotein, complete cd	2915	`___..........g..___`	2903	63
X80059.1	Echo Virus 11 genomic DNA	64	`...................`	82	100
X84981.1	Echovirus 9 (strain Hill), complete genome	64	`...................`	82	100
U16283.1	E6U16283 Echovirus 6 lytic strain, complete genome	63	`...................`	81	100
S76772.1	polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive	64	`...................`	82	100
D00435.1	SVDG Swine vesicular disease virus (STRAIN H/3 '76) genomic RNA, compl	64	`...................`	82	100
U57056.1	CXU57056 Coxsackievirus B3 Woodruff variant, complete genome	64	`...................`	82	100
X79047.1	Echovirus type 12, prototype Travis wild type genome	64	`...................`	82	100
X77708.1	Echovirus type 12, prototype Travis complete RNA genome	64	`...................`	82	100
AF039205.1	Coxsackievirus B6 strain Schmitt, complete genome	64	`...................`	82	100
AF085363.1	Coxsackievirus B2 strain Ohio-1 polyprotein gene, complete cds	64	`...................`	82	100
AF081485.1	Coxsackievirus B2 strain Ohio, complete genome	64	`...................`	82	100
AF105342.1	Coxsackievirus B6 strain Schmitt, complete genome	64	`...................`	82	100
AF114383.1	Coxsackievirus B5 strain Faulkner, complete genome	64	`...................`	82	100
AF114384.1	Coxsackievirus B6 strain Schmitt, complete genome	64	`...................`	82	100
AF029859.2	Echovirus 1 (strain Farouk / ATCC VR-1038) polyprotein precursor, gen	64	`...................`	82	100
AF268065.1	Swine vesicular disease virus strain NET/1/92, complete genome	64	`...................`	82	100
AF231763.1	Coxsackievirus B3 strain 31-1-93, complete genome	64	`...................`	82	100
AF231764.1	Coxsackievirus B3 strain P, complete genome	64	`...................`	82	100
AF231765.1	Coxsackievirus B3 strain PD, complete genome	64	`...................`	82	100
AF241359.1	Enterovirus CA55-1988, complete genome	65	`...................`	83	100
AY036579.1	Human echovirus 7 strain Wallace polyprotein gene, complete cds	64	`...................`	82	100
AF311939.1	Human coxsackievirus B4 strain E2 variant, complete genome	64	`...................`	82	100
AF317694.1	Human echovirus 18 strain Metcalf polyprotein gene, complete cds	64	`...................`	82	100
AJ276224.1	Human echovirus 11 genomic RNA for polyprotein	64	`...................`	82	100
AF328683.1	Human coxsackievirus B4 polyprotein-like gene, complete sequence	64	`...................`	82	100
AF524867.1	Human echovirus 9 isolate DM, complete genome	64	`...................`	82	100
AF465516.1	Human echovirus 7 strain Wallace, complete genome	64	`...................`	82	100
AF465517.1	Human echovirus 6 strain Charles, complete genome	64	`...................`	82	100
AY302540.1	Human echovirus 14 strain Tow complete genome	64	`...................`	82	100
AY302542.1	Human echovirus 16 strain Harrington complete genome	64	`...................`	82	100
AY302543.1	Human echovirus 17 strain CHHE-29 complete genome	64	`...................`	82	100
AY302546.1	Human echovirus 20 strain JV-1 complete genome	64	`...................`	82	100
AY302547.1	Human echovirus 21 strain Farina complete genome	64	`...................`	82	100
AY302548.1	Human echovirus 24 strain DeCamp complete genome	64	`...................`	82	100
AY302551.1	Human echovirus 27 strain Bacon complete genome	64	`...................`	82	100
AY302552.1	Human echovirus 29 strain JV-10 complete genome	64	`...................`	82	100
AY302557.1	Human echovirus 4 strain Pesacek complete genome	64	`...................`	82	100
AY302558.1	Human echovirus 6 strain D'Amori complete genome	64	`...................`	82	100
AY302559.1	Human echovirus 7 strain Wallace complete genome	64	`...................`	82	100
AY302560.1	Enterovirus 69 strain Toluca-1 complete genome	64	`...................`	82	100
AY429470.1	Swine vesicular disease virus strain HK'70, complete genome	64	`...................`	82	100
AY429470.1	Swine vesicular disease virus strain HK'70, complete genome	2915	`___..........g..___`	2903	63
AY556070.1	Enterovirus 75 strain USA/OK85-10362, complete genome	67	`...................`	85	100
AY673831.1	Human coxsackievirus B3 strain GA, complete genome	64	`...................`	82	100
AY752945.1	Human coxsackievirus B3 strain 0, complete genome	64	`...................`	82	100
AY752946.1	Human coxsackievirus B3 strain 20, complete genome	64	`...................`	82	100
AY875692.1	Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome	64	`...................`	82	100
AY896762.1	Human enterovirus B strain CBV3-11059-99 from Uzbekistan polyprotein	42	`...................`	60	100
AY896763.1	Human enterovirus B strain CBV3-18219-02 from Moldova polyprotein gen	42	`...................`	60	100
AY843297.1	Human enterovirus 79 strain USA/CA79-10384, complete genome	64	`...................`	82	100
AY843298.1	Human enterovirus 80 strain USA/CA67-10387, complete genome	64	`...................`	82	100
AY843299.1	Human enterovirus 81 strain USA/CA68-10389, complete genome	64	`...................`	82	100
AY843302.1	Human enterovirus 77 strain USA/TX97-10394, complete genome	66	`...................`	84	100
AY843303.1	Human enterovirus 85 strain BAN00-10353, complete genome	64	`...................`	82	100
AY843307.1	Human enterovirus 97 strain BAN99-10355, complete genome	64	`...................`	82	100
AY843308.1	Human enterovirus 101 strain CIV03-10361, complete genome	64	`...................`	82	100
AJ849942.1	Human echovirus 3 gene for polyprotein, genomic RNA, strain PicoBank/	64	`...................`	82	100
DQ246620.1	Human echovirus 30 strain Echo30/Zhejiang/17/03/CSF, complete genome	64	`...................`	82	100
DQ246620.1	Human echovirus 30 strain Echo30/Zhejiang/17/03/CSF, complete genome	6888	`___.........a.a..._`	6874	68
DQ480420.1	Human coxsackievirus B4 strain Tuscany, complete genome	64	`...................`	82	100
DQ480420.1	Human coxsackievirus B4 strain Tuscany, complete genome	6855	`___.........a.a..._`	6841	68
DQ534205.1	Human echovirus 30 isolate 14916net87, complete genome	64	`...................`	82	100
EF371880.2	Human enterovirus B isolate SE-03-78616, complete genome	64	`...................`	82	100
EU147493.1	Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds	64	`...................`	82	100
EU887278.1	Swine vesicular disease virus SVDV01, complete genome	64	`...................`	82	100
EU887278.1	Swine vesicular disease virus SVDV01, complete genome	2915	`___..........g..___`	2903	63
EU887279.1	Swine vesicular disease virus SVDV02, complete genome	64	`...................`	82	100
EU887280.1	Swine vesicular disease virus SVDV03, complete genome	64	`...................`	82	100
EU887281.1	Swine vesicular disease virus SVDV04, complete genome	64	`...................`	82	100
EU887281.1	Swine vesicular disease virus SVDV04, complete genome	2915	`___..........g..___`	2903	63
EU887282.1	Swine vesicular disease virus SVDV, complete genome	64	`...................`	82	100
EU887282.1	Swine vesicular disease virus SVDV, complete genome	2915	`___..........g..___`	2903	63
AB426611.1	Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227	64	`...................`	82	100
FJ000001.1	Human coxsackievirus B3 strain Fuyang19, complete genome	64	`...................`	82	100
GQ141875.1	Human coxsackievirus B3 strain Beijing0811, complete genome	64	`...................`	82	100
HM031191.1	Human echovirus 25 strain HN-2, complete genome	65	`...................`	83	100
AY752944.2	Human coxsackievirus B3 strain 28, complete genome	64	`...................`	82	100
HM777023.1	Human echovirus 18 isolate Kor05-ECV18-054cn, complete genome	64	`...................`	82	100
AF302996.1	Enterovirus 71 strain SHZH98 polyprotein gene, complete cds	64	`...................`	82	100
AY465356.1	Human enterovirus 71 strain SHZH03, complete genome	63	`...................`	81	100
AY421761.1	Human coxsackievirus A3 strain Olson, complete genome	64	`...................`	82	100
AY421763.1	Human coxsackievirus A5 strain Swartz, complete genome	64	`...................`	82	100
AY421765.1	Human coxsackievirus A7 strain Parker, complete genome	65	`...................`	83	100
AY773285.1	Human enterovirus 90 isolate F950027, complete genome	66	`...................`	84	100
AY697459.1	Human enterovirus 89 polyprotein gene, complete cds	64	`...................`	82	100
AY697460.1	Human enterovirus 90 polyprotein gene, complete cds	66	`...................`	84	100
AY697461.1	Human enterovirus 91 polyprotein gene, complete cds	64	`...................`	82	100
AB192877.1	Human enterovirus 90 genomic RNA, complete genome	66	`...................`	84	100
DQ133458.1	Human enterovirus 71 strain 984 polyprotein gene, complete cds	64	`...................`	82	100
DQ133459.1	Human enterovirus 71 strain 1235 polyprotein gene, complete cds	64	`...................`	82	100
EF373576.1	Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet	64	`...................`	82	100
EU131776.1	Human enterovirus 71 strain N3340-TW-02, complete genome	64	`...................`	82	100
AF326764.2	Simian enterovirus 46 strain OM22 (P15), complete genome	64	`...................`	82	100
EU703812.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete	64	`...................`	82	100
EU703813.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete	64	`...................`	82	100
EU703814.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete	64	`...................`	82	100
EU812515.1	Human enterovirus 71 strain FY23 from China, complete genome	66	`...................`	84	100
EU864507.1	Human enterovirus 71 isolate EV71/Zhejiang08, complete genome	65	`...................`	83	100
FJ158600.1	Human enterovirus 71 isolate DTID/ZJU-62, complete genome	64	`...................`	82	100
FJ158601.1	Human enterovirus 71 isolate DTID/ZJU-74, complete genome	64	`...................`	82	100
FJ194964.1	Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome	64	`...................`	82	100
FJ194965.1	Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome	64	`...................`	82	100
FJ360544.1	Human enterovirus 71 isolate GZ-08-01, complete genome	63	`...................`	81	100
FJ360545.1	Human enterovirus 71 isolate GZ-08-02, complete genome	63	`...................`	81	100
FJ360546.1	Human enterovirus 71 isolate GZ-08-03, complete genome	63	`...................`	81	100
FJ439769.1	Human enterovirus 71 strain Fuyang-0805, complete genome	64	`...................`	82	100
FJ606450.1	Human enterovirus 71 strain BJ08-Z025-5, complete genome	64	`...................`	82	100
FJ713137.1	Human enterovirus 71 strain Shanghai 036-2009, complete genome	65	`...................`	83	100
FJ828519.1	Human enterovirus 71 isolate BJ08, complete genome	42	`...................`	60	100
FJ607334.1	Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g	63	`...................`	81	100
FJ607335.1	Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g	63	`...................`	81	100
FJ607336.1	Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete	63	`...................`	81	100
FJ607337.1	Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co	63	`...................`	81	100
FJ607338.1	Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c	63	`...................`	81	100
GQ892830.1	Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome	64	`...................`	82	100
GQ994988.1	Human enterovirus 71 strain Anhui1-09-China, complete genome	64	`...................`	82	100
GQ994989.1	Human enterovirus 71 strain Chongqing1-09-China, complete genome	64	`...................`	82	100
GQ994991.1	Human enterovirus 71 strain Chongqing3-09-China, complete genome	64	`...................`	82	100
GQ994992.1	Human enterovirus 71 strain Henan2-09-China, complete genome	57	`...................`	75	100
GU366191.1	Human enterovirus 71 strain Henan10-08-China, complete genome	63	`...................`	81	100
GU396280.1	Human enterovirus 71 isolate EV71/Lanzhou01, complete genome	64	`...................`	82	100
GU459070.1	Human enterovirus 71 isolate FY23-K12, complete genome	66	`...................`	84	100
GU459071.1	Human enterovirus 71 isolate FY23-K14, complete genome	64	`...................`	82	100
HM003207.1	Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome	64	`...................`	82	100
GQ279369.1	Human enterovirus 71 strain SZ/HK08-5, complete genome	64	`...................`	82	100
GQ279370.1	Human enterovirus 71 strain SZ/HK08-6, complete genome	64	`...................`	82	100
HM002484.1	Human enterovirus 71 strain BJ67, complete genome	64	`...................`	82	100
HM002485.1	Human enterovirus 71 strain BJ97, complete genome	64	`...................`	82	100
HM002486.1	Human enterovirus 71 strain BJ110, complete genome	64	`...................`	82	100
HM002487.1	Human enterovirus 71 strain BJ303, complete genome	64	`...................`	82	100
HM002488.1	Human enterovirus 71 strain BJ366, complete genome	64	`...................`	82	100
HM002489.1	Human enterovirus 71 strain BJ398, complete genome	64	`...................`	82	100
HM053669.1	Human enterovirus 71 strain BJ293, complete genome	64	`...................`	82	100
HM053670.1	Human enterovirus 71 strain BJ393, complete genome	64	`...................`	82	100
HM053671.1	Human enterovirus 71 strain BJ462, complete genome	64	`...................`	82	100
HQ407557.1	Human enterovirus 71 strain LN009, complete genome	64	`...................`	82	100
AB550338.1	Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat	64	`...................`	82	100
AB550339.1	Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat	64	`...................`	82	100
HQ188292.1	Human enterovirus 71 strain Fuyang-0805a, complete genome	67	`...................`	85	100
HQ426649.1	Human enterovirus 71 strain 2010FJLY008, complete genome	63	`...................`	81	100
HQ891923.1	Human enterovirus 71 strain Shanghai 27-2009, complete genome	65	`...................`	83	100
HQ891924.1	Human enterovirus 71 strain Shanghai 28-2009, complete genome	65	`...................`	83	100
HQ891925.1	Human enterovirus 71 strain Shanghai 36-2009, complete genome	65	`...................`	83	100
HQ891926.1	Human enterovirus 71 strain Shanghai 51-2009, complete genome	65	`...................`	83	100
HQ891927.1	Human enterovirus 71 strain Shanghai 64-2009, complete genome	65	`...................`	83	100
HQ891928.1	Human enterovirus 71 strain Shanghai 117-2009, complete genome	65	`...................`	83	100
HQ891929.1	Human enterovirus 71 strain Shanghai 118-2009, complete genome	65	`...................`	83	100
HQ400942.1	Human enterovirus 71 HZ08/Hangzhou/2008, complete genome	64	`...................`	82	100
HQ423142.1	Human enterovirus 71 strain KMM/09, complete genome	64	`...................`	82	100
HQ423143.1	Human enterovirus 71 strain KM186/09, complete genome	64	`...................`	82	100
HQ456305.1	Human enterovirus A strain GZ2010-156, complete genome	64	`...................`	82	100
HQ456306.1	Human enterovirus A strain GZ2010-134, complete genome	64	`...................`	82	100
HQ456309.1	Human enterovirus A strain GZ08-831, complete genome	64	`...................`	82	100
HQ456311.1	Human enterovirus A strain GZ08-522, complete genome	64	`...................`	82	100
HQ456312.1	Human enterovirus A strain GZ08-520, complete genome	64	`...................`	82	100
HQ611148.1	Human enterovirus 71 strain AH08/06, complete genome	64	`...................`	82	100
JN001860.1	Human enterovirus 71 strain NB/2010/01, complete genome	64	`...................`	82	100
AF162711.1	Echovirus 30 strain Bastianni, complete genome	65	`_..................`	82	94
AF230973.1	AF230973 Enterovirus Yanbian 96-83csf, complete genome	66	`_..................`	83	94
AY036578.1	Human echovirus 7 strain UMMC polyprotein gene, complete cds	65	`_..................`	82	94
AF311938.1	Human echovirus 30 strain Bastianni, complete genome	65	`_..................`	82	94
AY302554.1	Human echovirus 31 strain Caldwell complete genome	64	`_..................`	81	94
FJ172447.1	Human echovirus 4 strain AUS250G, complete genome	65	`_..................`	82	94
AB501329.1	Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2	65	`_..................`	82	94
AB501330.1	Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2	65	`_..................`	82	94
AB501331.1	Human echovirus 13 gene for polyprotein, complete cds, strain: I5(1)-	65	`_..................`	82	94
AB501332.1	Human echovirus 13 gene for polyprotein, complete cds, strain: S3(1)-	65	`_..................`	82	94
AF119795.2	Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds	64	`_..................`	81	94
AF136379.1	Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds	65	`_..................`	82	94
AF119796.3	Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds	64	`_..................`	81	94
AF176044.1	Enterovirus 71 polyprotein gene, complete cds	66	`_..................`	83	94
AF304457.1	Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds	65	`_..................`	82	94
AF304458.1	Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds	65	`_..................`	82	94
AF304459.1	Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds	65	`_..................`	82	94
AY421766.1	Human coxsackievirus A8 strain Donovan, complete genome	65	`_..................`	82	94
AY421767.1	Human coxsackievirus A10 strain Kowalik, complete genome	65	`_..................`	82	94
DQ060149.1	Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome	65	`_..................`	82	94
DQ341355.1	Human enterovirus 71 isolate 06-KOR-00, complete genome	65	`_..................`	82	94
DQ341356.1	Human enterovirus 71 isolate 03-KOR-00, complete genome	65	`_..................`	82	94
DQ341357.1	Human enterovirus 71 isolate 7F-AUS-6-99, complete genome	65	`_..................`	82	94
DQ341358.1	Human enterovirus 71 isolate S40221-SAR-00, complete genome	65	`_..................`	82	94
DQ341359.1	Human enterovirus 71 isolate S10862-SAR-98, complete genome	65	`_..................`	82	94
DQ341360.1	Human enterovirus 71 isolate J115-MAL-01, complete genome	65	`_..................`	82	94
DQ341361.1	Human enterovirus 71 isolate 1M-AUS-12-00, complete genome	65	`_..................`	82	94
DQ381846.1	Human enterovirus 71 strain 6F/AUS/6/99, complete genome	65	`_..................`	82	94
DQ452074.1	Human enterovirus 71 strain 804/NO/03, complete genome	65	`_..................`	82	94
AM396584.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P	64	`_..................`	81	94
AM396585.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P	64	`_..................`	81	94
EF063152.1	Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd	65	`_..................`	82	94
EU414334.1	Human enterovirus 71 strain PLday4-CH-06, complete genome	64	`_..................`	81	94
EU414335.1	Human enterovirus 71 strain PLday1-CH-06, complete genome	64	`_..................`	81	94
FJ172159.1	Human enterovirus 71 isolate NUH0075/SIN/08, complete genome	26	`_..................`	43	94
FJ606447.1	Human enterovirus 71 strain BJ08-Z004-3, complete genome	65	`_..................`	82	94
FJ606448.1	Human enterovirus 71 strain BJ08-Z011-4, complete genome	65	`_..................`	82	94
FJ606449.1	Human enterovirus 71 strain BJ08-Z020-1, complete genome	65	`_..................`	82	94
GQ994990.1	Human enterovirus 71 strain Chongqing2-09-China, complete genome	65	`_..................`	82	94
AB550332.1	Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org	65	`_..................`	82	94
AB550333.1	Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1	65	`_..................`	82	94
AB550340.1	Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org	65	`_..................`	82	94
AB550341.1	Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS	65	`_..................`	82	94
HQ325852.1	Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome	66	`_..................`	83	94
AB575935.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 480	9	`_..................`	26	94
AB575936.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 961	4	`_..................`	21	94
AB575938.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100	38	`_..................`	55	94
AB575941.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 248	4	`_..................`	21	94
AB575948.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101	23	`_..................`	40	94
HQ456307.1	Human enterovirus A strain GZ2010-120, complete genome	65	`_..................`	82	94
HQ456308.1	Human enterovirus A strain GZ2010-118, complete genome	65	`_..................`	82	94
HQ456313.1	Human enterovirus A strain GZ2010-95, complete genome	65	`_..................`	82	94
X00596.1	Poliovirus type 3 mRNA (vaccine strain Sabin 3 (Leon 12a1b))	65	`............a......`	83	94
X00925.1	Poliovirus type 3 leon 12 a1b sequence (P3/Leon 12 a1b)	65	`............a......`	83	94
D90457.1	CXA24CG Human coxsackievirus A24 DNA, complete genome	65	`............a......`	83	94
D00625.1	POL2CG1 Human poliovirus 2 genomic RNA, complete genome	65	`............a......`	83	94
M12197.1	POL2LAN Poliovirus type 2 (Lansing strain), complete genome	65	`............a......`	83	94
K01392.1	POL3L37 Poliovirus P3/Leon/37 (type 3), complete genome	65	`............a......`	83	94
AJ132960.1	Human poliovirus 1, complete genome. Isolated from faeces of immunode	65	`............a......`	83	94
AJ132961.1	Human poliovirus 1, complete genome. Isolated from an immunodeficient	65	`............a......`	83	94
AJ293918.1	Human poliovirus type 3 complete genome, live-attenuated strain USOL-	65	`............a......`	83	94
AY184220.1	Human poliovirus 2 strain Sabin 2, complete genome	65	`.......c...........`	83	94
AY184221.1	Human poliovirus 3 strain Sabin 3, complete genome	65	`............a......`	83	94
AF541919.1	Human poliovirus 3 isolate PV3/NOR/01/8 polyprotein mRNA, complete cd	55	`............a......`	73	94
AY238473.1	Human poliovirus 2 strain MEF-1 polyprotein gene, complete cds	65	`............a......`	83	94
AY177685.1	Human poliovirus 2, complete genome	65	`.......c...........`	83	94
AY278549.1	Human poliovirus 2 isolate P2S/Mog65-3 (20120), complete genome	65	`.......c...........`	83	94
AY278550.1	Human poliovirus 2 isolate P2S/Mog65-1 (20003), complete genome	65	`.......c...........`	83	94
AY278551.1	Human poliovirus 2 isolate P2S/Mog66-4 (21043), complete genome	65	`.......c...........`	83	94
AY278552.1	Human poliovirus 2 isolate P2S/Mog65-2 (20077), complete genome	65	`.......c...........`	83	94
AF499635.1	Human coxsackievirus A1 strain Tompkins, complete genome	65	`............a......`	83	94
AF499641.1	Human coxsackievirus A19 strain 8663, complete genome	65	`............a......`	83	94
AF499643.1	Human coxsackievirus A22 strain Chulman, complete genome	64	`............a......`	82	94
AF546702.1	Human coxsackievirus A21 strain Kuykendall, complete genome	65	`............a......`	83	94
AF465515.1	Human coxsackievirus A21 strain Kuykendall, complete genome	65	`............a......`	83	94
AF111953.2	Human poliovirus 1 isolate CHN-Hebei/91-2, complete genome	65	`............a......`	83	94
AF111961.2	Human poliovirus 1 isolate CHN-Guangdong/92-2, complete genome	65	`............a......`	83	94
AF111982.2	Human poliovirus 1 isolate CHN-Yunnan/92, complete genome	65	`............a......`	83	94
AF111983.3	Human poliovirus 1 isolate CHN-Henan/91-3, complete genome	65	`............a......`	83	94
AJ544513.1	Human poliovirus 2 gene for polyprotein, genomic RNA, isolate 102050	65	`.......c...........`	83	94
AJ544513.1	Human poliovirus 2 gene for polyprotein, genomic RNA, isolate 102050	3129	`...........________`	3119	57
AY948201.1	Human poliovirus 2 isolate CHN1025 polyprotein gene, complete cds	65	`.......c...........`	83	94
AB205395.1	Human enterovirus C genomic RNA, complete genome, strain: Cambodia-02	65	`............a......`	83	94
AB205396.1	Human coxsackievirus A18 genomic RNA, complete genome, strain: CAM197	65	`............a......`	83	94
DQ205099.1	Human poliovirus 2 clone S2R9, complete genome	65	`.......c...........`	83	94
DQ358078.1	Human coxsackievirus A20 serotype CAV20a, complete genome	65	`............a......`	83	94
AM084223.1	Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,	65	`.......c...........`	83	94
AM084224.1	Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,	65	`.......c...........`	83	94
AM084225.1	Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,	65	`.......c...........`	83	94
DQ890385.1	Human poliovirus 2 strain NIE0210766, complete genome	65	`.......c...........`	83	94
DQ890387.1	Human poliovirus 2 strain USA9810768, complete genome	65	`.......c...........`	83	94
DQ890388.1	Human poliovirus 2 strain PER8310769, complete genome	65	`.......c...........`	83	94
EF456707.1	Human poliovirus 3 isolate K/2002 polyprotein gene, complete cds	25	`............a......`	43	94
EF555644.1	Human enterovirus 99, complete genome	65	`............a......`	83	94
EF555645.1	Human enterovirus 102, complete genome	65	`............a......`	83	94
AM884184.1	Human poliovirus 2, complete genome, genomic RNA, isolate VDPV MAD005	65	`.......c...........`	83	94
AM884185.1	Human poliovirus 2, complete genome, genomic RNA, isolate VDPV MAD006	65	`.......c...........`	83	94
FJ898290.1	Human poliovirus 2 strain Sabine 2 isolate CHN3024/HN/CHN/1999, compl	65	`.......c...........`	83	94
HM107832.1	Human poliovirus 2 isolate CHN1054, complete genome	65	`.......c...........`	83	94
HM107833.1	Human poliovirus 2 isolate CHN1078, complete genome	65	`.......c...........`	83	94
HM107834.1	Human poliovirus 2 isolate CHN3219, complete genome	65	`.......c...........`	83	94
HM107835.1	Human poliovirus 2 isolate CHN8316, complete genome	65	`.......c...........`	83	94
D00627.1	CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G	65	`.......c...........`	83	94
X92886.1	Echovirus 9 (strain Barty), complete genome	64	`.......c...........`	82	94
AF524866.1	Human echovirus 9 strain Barty, complete genome	64	`.......c...........`	82	94
AY186745.1	Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds	44	`.......c...........`	62	94
AY186746.1	Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds	44	`.......c...........`	62	94
AY186747.1	Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds	44	`.......c...........`	62	94
AY186748.1	Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds	44	`.......c...........`	62	94
AJ493062.2	Human enterovirus 77 gene for polyprotein, genomic RNA, isolate CF496	64	`.......c...........`	82	94
AF465518.1	Human echovirus 2 strain Cornelis, complete genome	64	`.......c...........`	82	94
AY302539.1	Human echovirus 13 strain Del Carmen complete genome	64	`.......c...........`	82	94
AY302541.1	Human echovirus 15 strain CH 96-51 complete genome	64	`.......c...........`	82	94
AY302544.1	Human echovirus 19 strain Burke complete genome	64	`.......c...........`	82	94
AY302545.1	Human echovirus 2 strain Cornelis complete genome	64	`.......c...........`	82	94
AY302549.1	Human echovirus 25 strain JV-4 complete genome	64	`.............t.....`	82	94
AY302550.1	Human echovirus 26 strain Coronel complete genome	64	`.......c...........`	82	94
AY302553.1	Human echovirus 3 strain Morrisey complete genome	64	`.......c...........`	82	94
AY302556.1	Human echovirus 33 strain Toluca-3 complete genome	64	`.......c...........`	82	94
AY556057.1	Enterovirus 74 strain USA/CA75-10213, complete genome	64	`.......c...........`	82	94
AJ577589.1	Human echovirus 11, isolate HUN-1108, complete virion genome	64	`.........a.........`	82	94
AJ577594.1	Human echovirus 11, isolate ROU-9191, complete virion genome	64	`.........a.........`	82	94
AY896765.1	Human enterovirus B strain EV7-15936-01 from Azerbaijan polyprotein g	42	`.......c...........`	60	94
AY843301.1	Human enterovirus 83 strain USA/CA76-10392, complete genome	65	`.......c...........`	83	94
AY843304.1	Human enterovirus 86 strain BAN00-10354, complete genome	64	`.......c...........`	82	94
AY843305.1	Human enterovirus 87 strain BAN01-10396, complete genome	64	`.......c...........`	82	94
AY843306.1	Human enterovirus 88 strain BAN01-10398, complete genome	64	`......t............`	82	94
DQ902712.1	Human enterovirus 84 isolate CIV2003-10603, complete genome	64	`.......c...........`	82	94
EF174468.1	Human coxsackievirus B2 isolate KOR 04-243, complete genome	64	`...........c.......`	82	94
EF174468.1	Human coxsackievirus B2 isolate KOR 04-243, complete genome	6869	`..a.........a.a..._`	6852	78
EF174469.1	Human coxsackievirus B2 isolate KOR 04-279, complete genome	64	`.......c...........`	82	94
EF174469.1	Human coxsackievirus B2 isolate KOR 04-279, complete genome	6866	`___.........a.a..._`	6852	68
EF634316.1	Human echovirus 11 strain D207, complete genome	65	`.........a.........`	83	94
AB426610.1	Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601	64	`.......c...........`	82	94
FJ357838.1	Human coxsackievirus B3 strain GZ803, complete genome	64	`.......c...........`	82	94
GU109481.1	Human coxsackievirus B3 strain SSM-CVB3, complete genome	64	`............a......`	82	94
HM185055.1	Human echovirus 6 strain Echo6/Henan/116/2008, complete genome	65	`.......c...........`	83	94
HM185056.1	Human enterovirus B strain EVB/Henan/127/2008, complete genome	42	`.......c...........`	60	94
HM775882.1	Human echovirus 5 isolate Kor06-ECV5-253cn, complete genome	64	`.......c...........`	82	94
U22521.1	ETU22521 Human enterovirus 71 polyprotein gene, complete cds	64	`............a......`	82	94
AF316321.2	Enterovirus 5865/sin/000009, complete genome	63	`...a...............`	81	94
AF352027.1	Enterovirus 5666/sin/002209, complete genome	63	`...a...............`	81	94
AY421760.1	Human coxsackievirus A2 strain Fleetwood, complete genome	64	`..a................`	82	94
AY421768.1	Human coxsackievirus A12 strain Texas-12, complete genome	64	`.............t.....`	82	94
AJ586873.1	Human enterovirus 71 gene for polyprotein, isolate EV71/9/97/SHA89	63	`...a...............`	81	94
AY697458.1	Human enterovirus 76 polyprotein gene, complete cds	65	`.......c...........`	83	94
AB204852.1	Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR	64	`............a......`	82	94
AB204853.1	Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts	64	`............a......`	82	94
DQ341362.1	Human enterovirus 71 isolate SB12736-SAR-03, complete genome	64	`...a...............`	82	94
DQ341363.1	Human enterovirus 71 isolate S19841-SAR-03, complete genome	64	`...a...............`	82	94
DQ341365.1	Human enterovirus 71 isolate PP37-MAL-01, complete genome	64	`...a...............`	82	94
DQ341366.1	Human enterovirus 71 isolate SB2864-SAR-00, complete genome	64	`...a...............`	82	94
AM396587.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate UH1/P	63	`...a...............`	81	94
EF373575.1	Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet	65	`...a...............`	83	94
GU434678.1	Human enterovirus 71 strain EV71-Hubei-09-China, complete genome	64	`............a......`	82	94
AB550336.1	Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-o	64	`...a...............`	82	94
AB550337.1	Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-L	64	`...a...............`	82	94
HQ456310.1	Human enterovirus A strain GZ08-530, complete genome	64	`.......g...........`	82	94
AY302555.1	Human echovirus 32 strain PR-10 complete genome	54	`_...........a......`	71	89
AB575942.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 369	1	`___................`	16	84
AJ577590.1	Human echovirus 11, isolate FIN-0666, complete virion genome	64	`......t..a.........`	82	89
AF177911.1	Coxsackievirus A16 polyprotein gene, complete cds	64	`...g.t.............`	82	89
AY421762.1	Human coxsackievirus A4 strain High Point, complete genome	65	`...a.t.............`	83	89
AY421769.1	Human coxsackievirus A14 strain G-14, complete genome	64	`...g.t.............`	82	89
AY790926.1	Human coxsackievirus A16 strain shzh00-1, complete genome	64	`...g.t.............`	82	89
DQ341354.1	Human enterovirus 71 isolate 3799-SIN-98, complete genome	64	`...a.t.............`	82	89
DQ341367.1	Human enterovirus 71 isolate MY821-3-SAR-97, complete genome	64	`...a.t.............`	82	89
DQ341368.1	Human enterovirus 71 isolate MY104-9-SAR-97, complete genome	64	`...a.t.............`	82	89
AM396586.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/	63	`...a.t.............`	81	89
AM396588.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/	54	`...a.t.............`	72	89
EF667343.1	Simian enterovirus 46 strain RNM5, complete genome	65	`............at.....`	83	89
EF667344.1	Human enterovirus 92 strain RJG7, complete genome	65	`............at.....`	83	89
EU262658.1	Human coxsackievirus A16 strain shzh05-1, complete genome	64	`...a.t.............`	82	89
EU364841.1	Human enterovirus 71 strain 26M/AUS/4/99, complete genome	64	`...a.t.............`	82	89
EU376004.1	Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome	64	`...a.t.............`	82	89
EU376005.1	Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome	64	`...a.t.............`	82	89
FJ198212.1	Human coxsackievirus A16 strain GZ08, complete genome	64	`...g.t.............`	82	89
AB469182.1	Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E	64	`...a.t.............`	82	89
AB469183.1	Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71	64	`...a.t.............`	82	89
FJ461781.1	Human enterovirus 71 isolate NUH0083/SIN/08, complete genome	28	`...a...c...........`	46	89
GQ279368.1	Human coxsackievirus A16 strain SZ/HK08-3, complete genome	64	`...g.t.............`	82	89
GQ279371.1	Human coxsackievirus A16 strain SZ/HK08-7, complete genome	64	`...g.t.............`	82	89
AB550334.1	Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o	64	`...a.t.............`	82	89
AB550335.1	Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L	64	`...a.t.............`	82	89
HQ269389.1	Human coxsackievirus A16 isolate XM-CA16-3560, complete genome	64	`...g.t.............`	82	89
HQ423141.1	Human coxsackievirus A16 strain KMM/08, complete genome	64	`...g.t.............`	82	89
EU144042.1	Human coxsackievirus B3 isolate CVB3-MCH polyprotein gene, complete c	65	`_.........a..t.....`	82	84
DQ341364.1	Human enterovirus 71 isolate 5511-SIN-00, complete genome	65	`_..a...c...........`	82	84
AB575928.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 115	1	`_..a.t.............`	18	84
AY421764.1	Human coxsackievirus A6 strain Gdula, complete genome	64	`...a.t.c...........`	82	84
EU812514.1	Human coxsackievirus A16 strain FY18 from China, complete genome	65	`...a.t.c...........`	83	84
AB575912.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 108	11	`...a.t.c...........`	29	84
AB575927.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 113	1	`__.a.t.............`	17	78
AB575939.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 365	1	`______.............`	13	68
U22522.1	ETU22522 Human enterovirus 71 polyprotein gene, complete cds	63	`..aa.t.c...........`	81	78
AB575915.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 944	9	`..aa.t.c...........`	27	78
AB575911.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100	2	`____.t.c...........`	16	68
AB575916.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 161	4	`____.t.c...........`	18	68
AB575918.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 205	3	`____.t.c...........`	17	68
EF026081.1	Human coxsackievirus A24 strain Joseph, complete genome	1644	`___..........._____`	1654	57

VIRsiRNAdb

Database of Viral siRNA / shRNA