VIRsiRNAdb

../../tmp/servers/virsirnadb/2062904504
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi1819	1	`ctcacgcggttgaaggaga`	19
X67706.1	Coxsackievirus B5 complete genome	209	`...................`	227	100
M33854.1	CXA3CG Coxsackievirus B3 (CVB3) complete genome	205	`...................`	223	100
M16572.1	CXA3G Coxsackievirus B3, complete genome	205	`...................`	223	100
M88483.1	CXAB3CG Coxsackievirus B3 mRNA, complete genome	206	`...................`	224	100
X80059.1	Echo Virus 11 genomic DNA	208	`...................`	226	100
U57056.1	CXU57056 Coxsackievirus B3 Woodruff variant, complete genome	206	`...................`	224	100
AF231763.1	Coxsackievirus B3 strain 31-1-93, complete genome	206	`...................`	224	100
AF231764.1	Coxsackievirus B3 strain P, complete genome	206	`...................`	224	100
AF231765.1	Coxsackievirus B3 strain PD, complete genome	206	`...................`	224	100
AY036579.1	Human echovirus 7 strain Wallace polyprotein gene, complete cds	206	`...................`	224	100
AF465516.1	Human echovirus 7 strain Wallace, complete genome	206	`...................`	224	100
AY302543.1	Human echovirus 17 strain CHHE-29 complete genome	207	`...................`	225	100
AY302544.1	Human echovirus 19 strain Burke complete genome	206	`...................`	224	100
AY302546.1	Human echovirus 20 strain JV-1 complete genome	206	`...................`	224	100
AY302548.1	Human echovirus 24 strain DeCamp complete genome	206	`...................`	224	100
AY302549.1	Human echovirus 25 strain JV-4 complete genome	205	`...................`	223	100
AY302552.1	Human echovirus 29 strain JV-10 complete genome	206	`...................`	224	100
AY302556.1	Human echovirus 33 strain Toluca-3 complete genome	206	`...................`	224	100
AY302559.1	Human echovirus 7 strain Wallace complete genome	206	`...................`	224	100
AY302560.1	Enterovirus 69 strain Toluca-1 complete genome	208	`...................`	226	100
AY752945.1	Human coxsackievirus B3 strain 0, complete genome	206	`...................`	224	100
AY752946.1	Human coxsackievirus B3 strain 20, complete genome	206	`...................`	224	100
AY843298.1	Human enterovirus 80 strain USA/CA67-10387, complete genome	207	`...................`	225	100
AY843301.1	Human enterovirus 83 strain USA/CA76-10392, complete genome	206	`...................`	224	100
AY843302.1	Human enterovirus 77 strain USA/TX97-10394, complete genome	213	`...................`	231	100
AJ849942.1	Human echovirus 3 gene for polyprotein, genomic RNA, strain PicoBank/	206	`...................`	224	100
AY752944.2	Human coxsackievirus B3 strain 28, complete genome	206	`...................`	224	100
HM775882.1	Human echovirus 5 isolate Kor06-ECV5-253cn, complete genome	205	`...................`	223	100
AF302996.1	Enterovirus 71 strain SHZH98 polyprotein gene, complete cds	207	`...................`	225	100
AY421761.1	Human coxsackievirus A3 strain Olson, complete genome	206	`...................`	224	100
AY421762.1	Human coxsackievirus A4 strain High Point, complete genome	211	`...................`	229	100
AY421763.1	Human coxsackievirus A5 strain Swartz, complete genome	205	`...................`	223	100
AY421764.1	Human coxsackievirus A6 strain Gdula, complete genome	209	`...................`	227	100
AY421765.1	Human coxsackievirus A7 strain Parker, complete genome	206	`...................`	224	100
AY421767.1	Human coxsackievirus A10 strain Kowalik, complete genome	206	`...................`	224	100
AY790926.1	Human coxsackievirus A16 strain shzh00-1, complete genome	210	`...................`	228	100
DQ341354.1	Human enterovirus 71 isolate 3799-SIN-98, complete genome	209	`...................`	227	100
DQ341364.1	Human enterovirus 71 isolate 5511-SIN-00, complete genome	209	`...................`	227	100
DQ341367.1	Human enterovirus 71 isolate MY821-3-SAR-97, complete genome	208	`...................`	226	100
DQ341368.1	Human enterovirus 71 isolate MY104-9-SAR-97, complete genome	208	`...................`	226	100
AM396586.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/	208	`...................`	226	100
EU131776.1	Human enterovirus 71 strain N3340-TW-02, complete genome	204	`...................`	222	100
EU262658.1	Human coxsackievirus A16 strain shzh05-1, complete genome	210	`...................`	228	100
EU364841.1	Human enterovirus 71 strain 26M/AUS/4/99, complete genome	209	`...................`	227	100
EU376004.1	Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome	209	`...................`	227	100
EU376005.1	Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome	209	`...................`	227	100
FJ198212.1	Human coxsackievirus A16 strain GZ08, complete genome	210	`...................`	228	100
AB469182.1	Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E	207	`...................`	225	100
AB469183.1	Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71	207	`...................`	225	100
FJ461781.1	Human enterovirus 71 isolate NUH0083/SIN/08, complete genome	173	`...................`	191	100
FJ606447.1	Human enterovirus 71 strain BJ08-Z004-3, complete genome	204	`...................`	222	100
FJ713137.1	Human enterovirus 71 strain Shanghai 036-2009, complete genome	206	`...................`	224	100
FJ607334.1	Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g	203	`...................`	221	100
FJ607335.1	Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g	203	`...................`	221	100
GQ279368.1	Human coxsackievirus A16 strain SZ/HK08-3, complete genome	210	`...................`	228	100
GQ279370.1	Human enterovirus 71 strain SZ/HK08-6, complete genome	204	`...................`	222	100
GQ279371.1	Human coxsackievirus A16 strain SZ/HK08-7, complete genome	210	`...................`	228	100
HM002486.1	Human enterovirus 71 strain BJ110, complete genome	205	`...................`	223	100
HM002487.1	Human enterovirus 71 strain BJ303, complete genome	205	`...................`	223	100
AB550334.1	Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o	207	`...................`	225	100
AB550335.1	Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L	207	`...................`	225	100
AB575911.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100	144	`...................`	162	100
AB575912.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 108	157	`...................`	175	100
AB575913.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 119	134	`...................`	152	100
AB575914.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 170	143	`...................`	161	100
AB575917.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101	160	`...................`	178	100
AB575927.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 113	144	`...................`	162	100
AB575928.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 115	145	`...................`	163	100
HQ269389.1	Human coxsackievirus A16 isolate XM-CA16-3560, complete genome	210	`...................`	228	100
HQ423141.1	Human coxsackievirus A16 strain KMM/08, complete genome	210	`...................`	228	100
AF316321.2	Enterovirus 5865/sin/000009, complete genome	209	`_..................`	226	94
AF352027.1	Enterovirus 5666/sin/002209, complete genome	209	`_..................`	226	94
AJ586873.1	Human enterovirus 71 gene for polyprotein, isolate EV71/9/97/SHA89	209	`_..................`	226	94
DQ341362.1	Human enterovirus 71 isolate SB12736-SAR-03, complete genome	210	`_..................`	227	94
DQ341363.1	Human enterovirus 71 isolate S19841-SAR-03, complete genome	210	`_..................`	227	94
DQ341365.1	Human enterovirus 71 isolate PP37-MAL-01, complete genome	209	`_..................`	226	94
DQ341366.1	Human enterovirus 71 isolate SB2864-SAR-00, complete genome	209	`_..................`	226	94
AM396587.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate UH1/P	209	`_..................`	226	94
AB550336.1	Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-o	210	`_..................`	227	94
AB550337.1	Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-L	210	`_..................`	227	94
U16283.1	E6U16283 Echovirus 6 lytic strain, complete genome	205	`.........c.........`	223	94
AF083069.1	Echovirus 5, complete genome	207	`..g................`	225	94
AF085363.1	Coxsackievirus B2 strain Ohio-1 polyprotein gene, complete cds	206	`.........c.........`	224	94
AF162711.1	Echovirus 30 strain Bastianni, complete genome	208	`.........c.........`	226	94
AF241359.1	Enterovirus CA55-1988, complete genome	208	`.........c.........`	226	94
AF311938.1	Human echovirus 30 strain Bastianni, complete genome	208	`.........c.........`	226	94
AF317694.1	Human echovirus 18 strain Metcalf polyprotein gene, complete cds	204	`......t............`	222	94
AJ276224.1	Human echovirus 11 genomic RNA for polyprotein	206	`.........c.........`	224	94
AF465517.1	Human echovirus 6 strain Charles, complete genome	206	`.........c.........`	224	94
AY302541.1	Human echovirus 15 strain CH 96-51 complete genome	207	`..........c........`	225	94
AY302555.1	Human echovirus 32 strain PR-10 complete genome	196	`.c.................`	214	94
AY302558.1	Human echovirus 6 strain D'Amori complete genome	206	`.........c.........`	224	94
AY556057.1	Enterovirus 74 strain USA/CA75-10213, complete genome	206	`.........c.........`	224	94
AY875692.1	Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome	209	`.........c.........`	227	94
AY843300.1	Human enterovirus 82 strain USA/CA64-10390, complete genome	209	`.............g.....`	227	94
AY843303.1	Human enterovirus 85 strain BAN00-10353, complete genome	206	`.........c.........`	224	94
AY843304.1	Human enterovirus 86 strain BAN00-10354, complete genome	206	`.........c.........`	224	94
DQ902712.1	Human enterovirus 84 isolate CIV2003-10603, complete genome	208	`.........c.........`	226	94
EF174468.1	Human coxsackievirus B2 isolate KOR 04-243, complete genome	206	`.........c.........`	224	94
EU147493.1	Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds	205	`..a................`	223	94
EU144042.1	Human coxsackievirus B3 isolate CVB3-MCH polyprotein gene, complete c	206	`.........c.........`	224	94
AB426610.1	Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601	206	`.........c.........`	224	94
HM031191.1	Human echovirus 25 strain HN-2, complete genome	209	`.........c.........`	227	94
U22522.1	ETU22522 Human enterovirus 71 polyprotein gene, complete cds	208	`..t................`	226	94
AF177911.1	Coxsackievirus A16 polyprotein gene, complete cds	210	`................g..`	228	94
AY465356.1	Human enterovirus 71 strain SHZH03, complete genome	204	`...g...............`	222	94
AY421760.1	Human coxsackievirus A2 strain Fleetwood, complete genome	206	`..a................`	224	94
DQ133459.1	Human enterovirus 71 strain 1235 polyprotein gene, complete cds	204	`...g...............`	222	94
AM396588.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/	199	`...............a...`	217	94
EF373576.1	Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet	204	`...g...............`	222	94
EU703812.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete	204	`...g...............`	222	94
EU703813.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete	204	`...g...............`	222	94
EU703814.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete	204	`...g...............`	222	94
EU812514.1	Human coxsackievirus A16 strain FY18 from China, complete genome	212	`.............g.....`	230	94
EU864507.1	Human enterovirus 71 isolate EV71/Zhejiang08, complete genome	205	`...g...............`	223	94
FJ158600.1	Human enterovirus 71 isolate DTID/ZJU-62, complete genome	204	`...g...............`	222	94
FJ158601.1	Human enterovirus 71 isolate DTID/ZJU-74, complete genome	204	`...g...............`	222	94
FJ194964.1	Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome	204	`...g...............`	222	94
FJ194965.1	Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome	204	`...g...............`	222	94
FJ360544.1	Human enterovirus 71 isolate GZ-08-01, complete genome	203	`...g...............`	221	94
FJ360545.1	Human enterovirus 71 isolate GZ-08-02, complete genome	204	`...g...............`	222	94
FJ360546.1	Human enterovirus 71 isolate GZ-08-03, complete genome	203	`...g...............`	221	94
FJ606448.1	Human enterovirus 71 strain BJ08-Z011-4, complete genome	204	`...g...............`	222	94
FJ606449.1	Human enterovirus 71 strain BJ08-Z020-1, complete genome	204	`...g...............`	222	94
AB482183.1	Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya	209	`..t................`	227	94
FJ607336.1	Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete	202	`...g...............`	220	94
FJ607337.1	Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co	203	`...g...............`	221	94
FJ607338.1	Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c	203	`...g...............`	221	94
GQ892830.1	Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome	204	`...g...............`	222	94
GQ994988.1	Human enterovirus 71 strain Anhui1-09-China, complete genome	204	`...g...............`	222	94
GQ994989.1	Human enterovirus 71 strain Chongqing1-09-China, complete genome	205	`...g...............`	223	94
GQ994990.1	Human enterovirus 71 strain Chongqing2-09-China, complete genome	204	`...g...............`	222	94
GQ994991.1	Human enterovirus 71 strain Chongqing3-09-China, complete genome	204	`...g...............`	222	94
GQ994992.1	Human enterovirus 71 strain Henan2-09-China, complete genome	196	`...g...............`	214	94
GU366191.1	Human enterovirus 71 strain Henan10-08-China, complete genome	204	`...g...............`	222	94
GU396280.1	Human enterovirus 71 isolate EV71/Lanzhou01, complete genome	204	`...g...............`	222	94
GU459070.1	Human enterovirus 71 isolate FY23-K12, complete genome	206	`...g...............`	224	94
GU459071.1	Human enterovirus 71 isolate FY23-K14, complete genome	204	`...g...............`	222	94
HM003207.1	Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome	204	`...g...............`	222	94
GQ279369.1	Human enterovirus 71 strain SZ/HK08-5, complete genome	204	`...g...............`	222	94
HM002484.1	Human enterovirus 71 strain BJ67, complete genome	204	`...g...............`	222	94
HM002485.1	Human enterovirus 71 strain BJ97, complete genome	204	`.c.................`	222	94
HM002488.1	Human enterovirus 71 strain BJ366, complete genome	204	`...g...............`	222	94
HM002489.1	Human enterovirus 71 strain BJ398, complete genome	205	`...g...............`	223	94
HM053669.1	Human enterovirus 71 strain BJ293, complete genome	204	`...g...............`	222	94
HM053671.1	Human enterovirus 71 strain BJ462, complete genome	204	`...g...............`	222	94
HQ189392.1	Human enterovirus 71 isolate HUN/1978, complete genome	209	`..t................`	227	94
HQ407557.1	Human enterovirus 71 strain LN009, complete genome	204	`...g...............`	222	94
AB550338.1	Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat	203	`...g...............`	221	94
AB550339.1	Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat	203	`...g...............`	221	94
HQ188292.1	Human enterovirus 71 strain Fuyang-0805a, complete genome	207	`...g...............`	225	94
HQ426649.1	Human enterovirus 71 strain 2010FJLY008, complete genome	202	`...g...............`	220	94
HQ325852.1	Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome	205	`...g...............`	223	94
AB575915.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 944	154	`..t................`	172	94
AB575916.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 161	145	`..t................`	163	94
AB575918.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 205	145	`..t................`	163	94
AB575923.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 202	151	`..t................`	169	94
HQ891923.1	Human enterovirus 71 strain Shanghai 27-2009, complete genome	205	`...g...............`	223	94
HQ891924.1	Human enterovirus 71 strain Shanghai 28-2009, complete genome	205	`...g...............`	223	94
HQ891925.1	Human enterovirus 71 strain Shanghai 36-2009, complete genome	206	`...g...............`	224	94
HQ891926.1	Human enterovirus 71 strain Shanghai 51-2009, complete genome	205	`...g...............`	223	94
HQ891927.1	Human enterovirus 71 strain Shanghai 64-2009, complete genome	205	`...g...............`	223	94
HQ891928.1	Human enterovirus 71 strain Shanghai 117-2009, complete genome	205	`...g...............`	223	94
HQ891929.1	Human enterovirus 71 strain Shanghai 118-2009, complete genome	205	`...g...............`	223	94
HQ400942.1	Human enterovirus 71 HZ08/Hangzhou/2008, complete genome	204	`...g...............`	222	94
HQ456305.1	Human enterovirus A strain GZ2010-156, complete genome	204	`...g...............`	222	94
HQ456306.1	Human enterovirus A strain GZ2010-134, complete genome	204	`...g...............`	222	94
HQ456307.1	Human enterovirus A strain GZ2010-120, complete genome	204	`...g...............`	222	94
HQ456308.1	Human enterovirus A strain GZ2010-118, complete genome	204	`...g...............`	222	94
HQ456309.1	Human enterovirus A strain GZ08-831, complete genome	204	`...g...............`	222	94
HQ456310.1	Human enterovirus A strain GZ08-530, complete genome	204	`...g...............`	222	94
HQ456311.1	Human enterovirus A strain GZ08-522, complete genome	204	`...g...............`	222	94
HQ456312.1	Human enterovirus A strain GZ08-520, complete genome	204	`...g...............`	222	94
HQ456313.1	Human enterovirus A strain GZ2010-95, complete genome	204	`...g...............`	222	94
HQ611148.1	Human enterovirus 71 strain AH08/06, complete genome	204	`...g...............`	222	94
JN001860.1	Human enterovirus 71 strain NB/2010/01, complete genome	205	`...g...............`	223	94
EF373575.1	Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet	211	`_....a.............`	228	89
X00595.1	Poliovirus type 2 genome (strain Sabin 2 (P712, Ch, 2ab))	200	`..............a.t..`	218	89
AY184220.1	Human poliovirus 2 strain Sabin 2, complete genome	200	`..............a.t..`	218	89
AY177685.1	Human poliovirus 2, complete genome	200	`..............a.t..`	218	89
AY278549.1	Human poliovirus 2 isolate P2S/Mog65-3 (20120), complete genome	200	`..............a.t..`	218	89
AY278550.1	Human poliovirus 2 isolate P2S/Mog65-1 (20003), complete genome	200	`..............a.t..`	218	89
AY278551.1	Human poliovirus 2 isolate P2S/Mog66-4 (21043), complete genome	200	`..............a.t..`	218	89
AY278552.1	Human poliovirus 2 isolate P2S/Mog65-2 (20077), complete genome	200	`..............a.t..`	218	89
AJ544513.1	Human poliovirus 2 gene for polyprotein, genomic RNA, isolate 102050	200	`..............a.c..`	218	89
AY948201.1	Human poliovirus 2 isolate CHN1025 polyprotein gene, complete cds	201	`..............a.t..`	219	89
AM040035.1	Human poliovirus 2 complete virion genome, isolate PV2/4568-1/ISR98	104	`..............a.c..`	122	89
AM040036.1	Human poliovirus 2 complete virion genome, isolate PV2/5021-1/ISR99	104	`..............a.c..`	122	89
AM040037.1	Human poliovirus 2 complete virion genome, isolate PV2/5074-18/ISR99	104	`..............a.c..`	122	89
AM040038.1	Human poliovirus 2 complete virion genome, isolate PV2/5104-1/ISR99	104	`..............a.c..`	122	89
AM040039.1	Human poliovirus 2 complete virion genome, isolate PV2/5116-9/ISR99	104	`..............a.c..`	122	89
DQ205099.1	Human poliovirus 2 clone S2R9, complete genome	200	`..............a.t..`	218	89
AM084223.1	Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,	200	`..............a.t..`	218	89
AM084224.1	Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,	200	`..............a.t..`	218	89
AM084225.1	Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,	200	`..............a.t..`	218	89
DQ890385.1	Human poliovirus 2 strain NIE0210766, complete genome	200	`..............a.t..`	218	89
DQ890387.1	Human poliovirus 2 strain USA9810768, complete genome	200	`..............a.c..`	218	89
DQ890388.1	Human poliovirus 2 strain PER8310769, complete genome	200	`..............a.t..`	218	89
AM884184.1	Human poliovirus 2, complete genome, genomic RNA, isolate VDPV MAD005	200	`..............a.t..`	218	89
AM884185.1	Human poliovirus 2, complete genome, genomic RNA, isolate VDPV MAD006	200	`..............a.t..`	218	89
FJ898290.1	Human poliovirus 2 strain Sabine 2 isolate CHN3024/HN/CHN/1999, compl	200	`..............a.t..`	218	89
HM107832.1	Human poliovirus 2 isolate CHN1054, complete genome	200	`..............a.t..`	218	89
HM107833.1	Human poliovirus 2 isolate CHN1078, complete genome	200	`..............a.t..`	218	89
HM107834.1	Human poliovirus 2 isolate CHN3219, complete genome	200	`..............a.c..`	218	89
HM107835.1	Human poliovirus 2 isolate CHN8316, complete genome	200	`..............a.t..`	218	89
X54521.1	Swine vesicular disease virus complete genomic RNA	206	`.........c......g..`	224	89
D00627.1	CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G	207	`...g.....c.........`	225	89
D16364.1	SVDMPS Swine vesicular disease virus gene for polyprotein, complete cd	206	`.........c......g..`	224	89
X84981.1	Echovirus 9 (strain Hill), complete genome	205	`..tg...............`	223	89
X92886.1	Echovirus 9 (strain Barty), complete genome	206	`.........cc........`	224	89
D00435.1	SVDG Swine vesicular disease virus (STRAIN H/3 '76) genomic RNA, compl	206	`.........c......g..`	224	89
AF029859.2	Echovirus 1 (strain Farouk / ATCC VR-1038) polyprotein precursor, gen	207	`....a...........g..`	225	89
AF230973.1	AF230973 Enterovirus Yanbian 96-83csf, complete genome	211	`..tg...............`	229	89
AF268065.1	Swine vesicular disease virus strain NET/1/92, complete genome	206	`.........c......g..`	224	89
AF328683.1	Human coxsackievirus B4 polyprotein-like gene, complete sequence	209	`...g.....c.........`	227	89
AF328683.1	Human coxsackievirus B4 polyprotein-like gene, complete sequence	6316	`.....taa.........__`	6332	73
AF524866.1	Human echovirus 9 strain Barty, complete genome	206	`.........cc........`	224	89
AY186745.1	Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds	186	`..a......c.........`	204	89
AY186746.1	Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds	186	`..a......c.........`	204	89
AY186747.1	Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds	186	`..a......c.........`	204	89
AY186748.1	Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds	186	`..a......c.........`	204	89
AY302539.1	Human echovirus 13 strain Del Carmen complete genome	206	`.a.......c.........`	224	89
AY302540.1	Human echovirus 14 strain Tow complete genome	205	`..a......c.........`	223	89
AY302542.1	Human echovirus 16 strain Harrington complete genome	206	`..a......c.........`	224	89
AY302551.1	Human echovirus 27 strain Bacon complete genome	208	`...g.....c.........`	226	89
AY302553.1	Human echovirus 3 strain Morrisey complete genome	207	`..ag...............`	225	89
AY302557.1	Human echovirus 4 strain Pesacek complete genome	206	`..tg...............`	224	89
AY429470.1	Swine vesicular disease virus strain HK'70, complete genome	206	`.........c......g..`	224	89
AY556070.1	Enterovirus 75 strain USA/OK85-10362, complete genome	212	`......t..c.........`	230	89
AJ577590.1	Human echovirus 11, isolate FIN-0666, complete virion genome	208	`......t..c.........`	226	89
AJ577594.1	Human echovirus 11, isolate ROU-9191, complete virion genome	208	`......t..c.........`	226	89
AY896763.1	Human enterovirus B strain CBV3-18219-02 from Moldova polyprotein gen	184	`.........cc........`	202	89
AY843308.1	Human enterovirus 101 strain CIV03-10361, complete genome	206	`...g..........a....`	224	89
DQ246620.1	Human echovirus 30 strain Echo30/Zhejiang/17/03/CSF, complete genome	207	`......t..c.........`	225	89
EF634316.1	Human echovirus 11 strain D207, complete genome	209	`......t..c.........`	227	89
EU887278.1	Swine vesicular disease virus SVDV01, complete genome	206	`.........c......g..`	224	89
EU887279.1	Swine vesicular disease virus SVDV02, complete genome	206	`.........c......g..`	224	89
EU887280.1	Swine vesicular disease virus SVDV03, complete genome	206	`.........c......g..`	224	89
EU887281.1	Swine vesicular disease virus SVDV04, complete genome	206	`.........c......g..`	224	89
EU887282.1	Swine vesicular disease virus SVDV, complete genome	206	`.........c......g..`	224	89
FJ357838.1	Human coxsackievirus B3 strain GZ803, complete genome	207	`...g.....c.........`	225	89
AB501329.1	Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2	207	`......t..c.........`	225	89
AB501330.1	Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2	207	`......t..c.........`	225	89
AB501331.1	Human echovirus 13 gene for polyprotein, complete cds, strain: I5(1)-	207	`......t..c.........`	225	89
AB501332.1	Human echovirus 13 gene for polyprotein, complete cds, strain: S3(1)-	207	`......t..c.........`	225	89
HM777023.1	Human echovirus 18 isolate Kor05-ECV18-054cn, complete genome	207	`...g.....c.........`	225	89
AF119795.2	Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds	205	`...g.....c.........`	223	89
AF136379.1	Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds	207	`...g.....c.........`	225	89
AF119796.3	Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds	205	`...g.....c.........`	223	89
AF176044.1	Enterovirus 71 polyprotein gene, complete cds	208	`...g.....c.........`	226	89
AF304457.1	Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds	207	`...g.....c.........`	225	89
AF304458.1	Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds	207	`...g.....c.........`	225	89
AF304459.1	Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds	207	`...g.....c.........`	225	89
DQ060149.1	Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome	207	`...g.....c.........`	225	89
DQ133458.1	Human enterovirus 71 strain 984 polyprotein gene, complete cds	204	`..tg...............`	222	89
DQ341357.1	Human enterovirus 71 isolate 7F-AUS-6-99, complete genome	206	`...g.....c.........`	224	89
DQ341359.1	Human enterovirus 71 isolate S10862-SAR-98, complete genome	206	`...g.....c.........`	224	89
DQ381846.1	Human enterovirus 71 strain 6F/AUS/6/99, complete genome	206	`...g.....c.........`	224	89
AM396584.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P	205	`...g.....c.........`	223	89
AM396585.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P	205	`...g.....c.........`	223	89
EU812515.1	Human enterovirus 71 strain FY23 from China, complete genome	206	`...g.............a.`	224	89
FJ172159.1	Human enterovirus 71 isolate NUH0075/SIN/08, complete genome	167	`...g.....c.........`	185	89
FJ439769.1	Human enterovirus 71 strain Fuyang-0805, complete genome	204	`...g.............a.`	222	89
FJ828519.1	Human enterovirus 71 isolate BJ08, complete genome	183	`..tg...............`	201	89
AB550332.1	Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org	206	`...g.....c.........`	224	89
AB550333.1	Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1	206	`...g.....c.........`	224	89
AB575937.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 141	118	`.........c....a....`	136	89
AB575939.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 365	137	`...g.....c.........`	155	89
AB575941.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 248	145	`...g.....c.........`	163	89
AB575942.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 369	140	`...g.....c.........`	158	89
AB575948.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101	163	`...g.....c.........`	181	89
HQ423142.1	Human enterovirus 71 strain KMM/09, complete genome	204	`...g.............a.`	222	89
U22521.1	ETU22521 Human enterovirus 71 polyprotein gene, complete cds	209	`__...a.............`	225	84
AB204852.1	Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR	209	`__...a.............`	225	84
AB204853.1	Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts	209	`__...a.............`	225	84
GU434678.1	Human enterovirus 71 strain EV71-Hubei-09-China, complete genome	209	`__...a.............`	225	84
AY843299.1	Human enterovirus 81 strain USA/CA68-10389, complete genome	204	`_....a...c.........`	221	84
EF174469.1	Human coxsackievirus B2 isolate KOR 04-279, complete genome	207	`_....a...c.........`	224	84
X05690.1	Coxsackievirus B4 complete genome	207	`..tg.....c.........`	225	84
S76772.1	polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive	208	`..tg.....c.........`	226	84
AF311939.1	Human coxsackievirus B4 strain E2 variant, complete genome	208	`..tg.....c.........`	226	84
AF524867.1	Human echovirus 9 isolate DM, complete genome	206	`..tg.....c.........`	224	84
AJ493062.2	Human enterovirus 77 gene for polyprotein, genomic RNA, isolate CF496	206	`..t...t..c.........`	224	84
AF465518.1	Human echovirus 2 strain Cornelis, complete genome	205	`..ag..........a....`	223	84
AY302545.1	Human echovirus 2 strain Cornelis complete genome	205	`..ag..........a....`	223	84
AY302547.1	Human echovirus 21 strain Farina complete genome	206	`..ag.....c.........`	224	84
AJ577589.1	Human echovirus 11, isolate HUN-1108, complete virion genome	208	`...g..t..c.........`	226	84
AY896762.1	Human enterovirus B strain CBV3-11059-99 from Uzbekistan polyprotein	186	`..tg.....c.........`	204	84
AY843307.1	Human enterovirus 97 strain BAN99-10355, complete genome	206	`..a.a....c.........`	224	84
DQ480420.1	Human coxsackievirus B4 strain Tuscany, complete genome	207	`..tg.....c.........`	225	84
AB426611.1	Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227	206	`..t...t..c.........`	224	84
FJ000001.1	Human coxsackievirus B3 strain Fuyang19, complete genome	205	`...g..t..c.........`	223	84
FJ172447.1	Human echovirus 4 strain AUS250G, complete genome	211	`..tg..t............`	229	84
GQ141875.1	Human coxsackievirus B3 strain Beijing0811, complete genome	207	`...g..t..c.........`	225	84
HM185055.1	Human echovirus 6 strain Echo6/Henan/116/2008, complete genome	207	`..tg.....c.........`	225	84
AY421766.1	Human coxsackievirus A8 strain Donovan, complete genome	207	`.g..a....c.........`	225	84
AY421769.1	Human coxsackievirus A14 strain G-14, complete genome	213	`..tg.....c.........`	231	84
DQ341355.1	Human enterovirus 71 isolate 06-KOR-00, complete genome	206	`..tg.....c.........`	224	84
DQ341356.1	Human enterovirus 71 isolate 03-KOR-00, complete genome	206	`..tg.....c.........`	224	84
FJ606450.1	Human enterovirus 71 strain BJ08-Z025-5, complete genome	204	`..tg.............a.`	222	84
GU196833.1	Human enterovirus 71 strain Henan1-09-China polyprotein gene, complet	16	`...gt...a..........`	34	84
HM185056.1	Human enterovirus B strain EVB/Henan/127/2008, complete genome	188	`____.....c.........`	202	73
AF326764.2	Simian enterovirus 46 strain OM22 (P15), complete genome	209	`____.a.............`	223	73
X79047.1	Echovirus type 12, prototype Travis wild type genome	206	`_.g..a...c.........`	223	78
X77708.1	Echovirus type 12, prototype Travis complete RNA genome	206	`_.g..a...c.........`	223	78
AY843306.1	Human enterovirus 88 strain BAN01-10398, complete genome	209	`_.a..a...c.........`	226	78
AF448782.1	Human poliovirus 2 strain EGY88-074, complete genome	6079	`__....t.t........._`	6094	73
AF039205.1	Coxsackievirus B6 strain Schmitt, complete genome	209	`___.a....c.........`	224	73
AF105342.1	Coxsackievirus B6 strain Schmitt, complete genome	209	`___.a....c.........`	224	73
AF114384.1	Coxsackievirus B6 strain Schmitt, complete genome	209	`___.a....c.........`	224	73
AY302554.1	Human echovirus 31 strain Caldwell complete genome	208	`___.a....c.........`	223	73
AF499637.1	Human coxsackievirus A13 strain Flores, complete genome	202	`..a..........._____`	215	68
AF465511.1	Human coxsackievirus A13 strain Flores, complete genome	202	`..a..........._____`	215	68
AF405666.1	Human poliovirus 1 isolate HAI01007, complete genome	4215	`_______............`	4226	63
AF405669.1	Human poliovirus 1 isolate HAI00003, complete genome	4216	`_______............`	4227	63
AF405682.1	Human poliovirus 1 isolate DOR00041C1, complete genome	4215	`_______............`	4226	63
AF405690.1	Human poliovirus 1 isolate DOR00013, complete genome	4215	`_______............`	4226	63
AF416342.1	Human poliovirus 1 isolate HAI01-013, complete genome	4215	`_______............`	4226	63
AF458333.1	Human poliovirus 1 isolate HAI01015, complete genome	4215	`_______............`	4226	63
AF111982.2	Human poliovirus 1 isolate CHN-Yunnan/92, complete genome	4219	`_______............`	4230	63
FJ914252.2	Human poliovirus 3 strain SWI10947, complete genome	4210	`_______............`	4221	63
AF538842.1	Human poliovirus 1 isolate TCDC01-330, complete genome	200	`..tg..t.........c..`	218	78
AY928385.1	Human poliovirus 1 isolate d054-2002037604 polyprotein gene, complete	200	`..tg..t.........c..`	218	78
AY036578.1	Human echovirus 7 strain UMMC polyprotein gene, complete cds	205	`..tg..t..c.........`	223	78
GU109481.1	Human coxsackievirus B3 strain SSM-CVB3, complete genome	207	`...ga.a..c.........`	225	78
AY278553.1	Human poliovirus 1 isolate P1W/Bar65 (19276), complete genome	204	`__.c.a..........c..`	220	73

VIRsiRNAdb

Database of Viral siRNA / shRNA