../../tmp/servers/virsirnadb/1760941473
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi2169 | 1 | ctctgtgtatggagacaca | 19 | |
| NC_001357.1 | Human papillomavirus - 18, complete genome | 353 | ................... | 371 | 100 |
| NC_001526.2 | Human papillomavirus type 16, complete genome | 1857 | ____.............._ | 1870 | 73 |
| NC_001526.2 | Human papillomavirus type 16, complete genome | 1769 | _________.......... | 1760 | 52 |
| NC_001678.1 | Rhesus monkey papillomavirus, complete genome | 1505 | _............._____ | 1517 | 68 |
| NC_001678.1 | Rhesus monkey papillomavirus, complete genome | 7021 | __.........t..g.___ | 7008 | 63 |
| NC_001583.1 | Human papillomavirus type 26, complete genome | 340 | _...........t.ca... | 357 | 78 |
| NC_001352.1 | Human papillomavirus - 2, complete genome | 188 | ............t._____ | 201 | 68 |
| NC_001352.1 | Human papillomavirus - 2, complete genome | 353 | _______..c......... | 364 | 57 |
| NC_008298.1 | Rousettus aegyptiacus papillomavirus type 1, complete genome | 6412 | ___..ca..........._ | 6426 | 68 |
| NC_001457.1 | Human papillomavirus type 4, complete genome | 5725 | ______..t.......... | 5737 | 63 |
| NC_001457.1 | Human papillomavirus type 4, complete genome | 7133 | _..........c.a.t.__ | 7118 | 68 |
| NC_008184.1 | Tursiops truncatus papillomavirus 2, complete genome | 7439 | ..........c..______ | 7451 | 63 |
| NC_008184.1 | Tursiops truncatus papillomavirus 2, complete genome | 213 | _____..........g.__ | 224 | 57 |
| NC_008184.1 | Tursiops truncatus papillomavirus 2, complete genome | 6232 | _.g..........______ | 6243 | 57 |
| NC_001691.1 | Human papillomavirus type 50, complete genome | 2517 | ________........... | 2527 | 57 |
| NC_001691.1 | Human papillomavirus type 50, complete genome | 5605 | _________.......... | 5614 | 52 |
| NC_009752.1 | Bovine papillomavirus 8, complete genome | 3763 | ______...........__ | 3753 | 57 |
| NC_012213.1 | Human papillomavirus type 108, complete genome | 4591 | _..........._______ | 4601 | 57 |
| NC_012213.1 | Human papillomavirus type 108, complete genome | 2752 | ________.........._ | 2761 | 52 |
| NC_001587.1 | Human papillomavirus type 34, complete genome | 7254 | ________........... | 7244 | 57 |
| NC_001587.1 | Human papillomavirus type 34, complete genome | 348 | _..a.........______ | 359 | 57 |
| NC_001587.1 | Human papillomavirus type 34, complete genome | 2736 | ________.........._ | 2745 | 52 |
| NC_006951.1 | Erethizon dorsatum papillomavirus type 1, complete genome | 5581 | ..t..ct.t........._ | 5598 | 73 |
| NC_006951.1 | Erethizon dorsatum papillomavirus type 1, complete genome | 2336 | _____.c..........__ | 2325 | 57 |
| NC_003348.1 | Phocoena spinipinnis papillomavirus, complete genome | 5499 | _..........a.tc..__ | 5484 | 68 |
| NC_001593.1 | Human papillomavirus type 53, complete genome | 6233 | ___..a.g.........__ | 6246 | 63 |
| NC_001593.1 | Human papillomavirus type 53, complete genome | 531 | _________.......... | 540 | 52 |
| NC_010329.1 | Human papillomavirus type 88, complete genome | 1637 | _.t.a..........____ | 1650 | 63 |
| NC_011280.1 | Sus scrofa papillomavirus type 1, complete genome | 6937 | __.a..........g.___ | 6924 | 63 |
| NC_013196.1 | Rattus norvegicus papillomavirus 1 EES-2009, complete genome | 6553 | ___.a.a..........__ | 6566 | 63 |
| NC_012486.1 | Human papillomavirus type 112, complete genome | 3086 | _.t..........a.____ | 3073 | 63 |
| NC_012486.1 | Human papillomavirus type 112, complete genome | 2681 | _________.......... | 2690 | 52 |
| NC_012486.1 | Human papillomavirus type 112, complete genome | 3711 | _____..........____ | 3720 | 52 |
| NC_014956.1 | Human papillomavirus type 134, complete genome | 5821 | ___..a.g.........__ | 5834 | 63 |
| NC_001356.1 | Human papillomavirus - 1, complete genome | 3023 | _____..........a.__ | 3034 | 57 |
| NC_013237.1 | Canine papillomavirus 6, complete genome | 168 | ..g........._______ | 179 | 57 |
| NC_001676.1 | Human papillomavirus 54, complete genome | 264 | ______..g........._ | 275 | 57 |
| NC_013035.1 | Human papillomavirus 116, complete genome | 5913 | _______..........g. | 5924 | 57 |
| NC_001838.1 | Common chimpanzee papillomavirus 1, complete genome | 2728 | ________.........._ | 2737 | 52 |
| NC_004068.1 | Fringilla coelebs papillomavirus, complete genome | 5360 | _________.......... | 5351 | 52 |
| NC_010226.1 | Canine papillomavirus 4, complete genome | 6787 | _________.......... | 6796 | 52 |
| NC_001591.1 | Human papillomavirus type 49, complete genome | 1769 | _..........________ | 1778 | 52 |
| NC_001586.1 | Human papillomavirus type 32, complete genome | 2720 | ________.........._ | 2729 | 52 |
| NC_001690.1 | Human papillomavirus type 48, complete genome | 5912 | ___.a.t.........t._ | 5926 | 63 |
| NC_001522.1 | Bovine papillomavirus - 1, complete genome | 2604 | ____.a.g.........__ | 2616 | 57 |
| NC_002232.1 | Rabbit oral papillomavirus, complete genome | 239 | _____.........gg.._ | 251 | 57 |
| NC_012485.1 | Human papillomavirus type 109, complete genome | 2488 | .c.........a.______ | 2500 | 57 |
| NC_001595.1 | Human papillomavirus type 7, complete genome | 1664 | .a.........t.______ | 1652 | 57 |
| NC_011109.1 | Tursiops truncatus papillomavirus type 1, complete genome | 1190 | _.........aa.._____ | 1178 | 57 |