VIRsiRNAdb

../../tmp/servers/virsirnadb/1107629370
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi1867	1	`ctgcaaagggacccacggtggaacagg`	27
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	95822	`..........g................`	95848	96
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	3258	`______________...t.........`	3246	44
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	107788	`______________..........t..`	107800	44
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	13641	`___________..........._____`	13651	40
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	16714	`___________..........._____`	16724	40
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	19787	`___________..........._____`	19797	40
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	22860	`___________..........._____`	22870	40
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	25933	`___________..........._____`	25943	40
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	29006	`___________..........._____`	29016	40
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	32079	`___________..........._____`	32089	40
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	35152	`___________..........._____`	35162	40
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	118239	`..c.........gtc.aa..cc...__`	118215	62
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	5048	`____________.........c..g._`	5035	44
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	8087	`_____________..........t.__`	8076	40
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	89230	`___.........t..____________`	89241	40
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	120001	`_______________..........c.`	119990	40
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	3609	`___________..........______`	3600	37
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	9491	`_________________..........`	9500	37
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	57724	`_..........________________`	57733	37
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	122462	`___________..........______`	122471	37
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	44788	`_....gcc..t.ag.atc.........`	44763	62
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	13141	`_____.........ta..c._______`	13155	44
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	16214	`_____.........ta..c._______`	16228	44
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	19287	`_____.........ta..c._______`	19301	44
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	22360	`_____.........ta..c._______`	22374	44
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	25433	`_____.........ta..c._______`	25447	44
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	28506	`_____.........ta..c._______`	28520	44
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	31579	`_____.........ta..c._______`	31593	44
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	34652	`_____.........ta..c._______`	34666	44
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	63576	`____________.........tc..c.`	63590	44
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	84915	`_.c..gt.........___________`	84929	44
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	97171	`_____________..tt........._`	97159	40
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	103424	`__...g..cttt.ac.........___`	103445	55
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	10101	`_______________.t........._`	10111	37
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	47407	`________________.........c.`	47417	37
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	7218	`__.........________________`	7210	33
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	37576	`______.........____________`	37584	33
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	51662	`____________.........______`	51670	33
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	72457	`____________.........______`	72465	33
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	104938	`____________.........______`	104946	33
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	106725	`_........._________________`	106717	33
AY961628.3	Human herpesvirus 4 strain GD1, complete genome	114252	`____________.........______`	114260	33
NC_009334.1	Human herpesvirus 4, complete genome	96734	`..........g................`	96760	96
NC_009334.1	Human herpesvirus 4, complete genome	136593	`__________..t............__`	136607	51
NC_009334.1	Human herpesvirus 4, complete genome	3258	`______________...t.........`	3246	44
NC_009334.1	Human herpesvirus 4, complete genome	108699	`______________..........t..`	108711	44
NC_009334.1	Human herpesvirus 4, complete genome	119147	`..c.........gtc.aa..cc...__`	119123	62
NC_009334.1	Human herpesvirus 4, complete genome	5048	`____________.........c..g._`	5035	44
NC_009334.1	Human herpesvirus 4, complete genome	135288	`_______.a.g..........______`	135301	44
NC_009334.1	Human herpesvirus 4, complete genome	86393	`______________.........g.._`	86382	40
NC_009334.1	Human herpesvirus 4, complete genome	90143	`___.........t..____________`	90154	40
NC_009334.1	Human herpesvirus 4, complete genome	120909	`_______________..........c.`	120898	40
NC_009334.1	Human herpesvirus 4, complete genome	133568	`_______..........t.________`	133579	40
NC_009334.1	Human herpesvirus 4, complete genome	161815	`_____.g..........__________`	161804	40
NC_009334.1	Human herpesvirus 4, complete genome	3609	`___________..........______`	3600	37
NC_009334.1	Human herpesvirus 4, complete genome	9440	`_________________..........`	9449	37
NC_009334.1	Human herpesvirus 4, complete genome	57854	`_..........________________`	57863	37
NC_009334.1	Human herpesvirus 4, complete genome	123370	`___________..........______`	123379	37
NC_009334.1	Human herpesvirus 4, complete genome	129205	`________________.........._`	129196	37
NC_009334.1	Human herpesvirus 4, complete genome	44968	`_....gcc..t.ag.atc.........`	44943	62
NC_009334.1	Human herpesvirus 4, complete genome	13091	`_____.........ta..c._______`	13105	44
NC_009334.1	Human herpesvirus 4, complete genome	16161	`_____.........ta..c._______`	16175	44
NC_009334.1	Human herpesvirus 4, complete genome	19231	`_____.........ta..c._______`	19245	44
NC_009334.1	Human herpesvirus 4, complete genome	22301	`_____.........ta..c._______`	22315	44
NC_009334.1	Human herpesvirus 4, complete genome	25371	`_____.........ta..c._______`	25385	44
NC_009334.1	Human herpesvirus 4, complete genome	28441	`_____.........ta..c._______`	28455	44
NC_009334.1	Human herpesvirus 4, complete genome	31511	`_____.........ta..c._______`	31525	44
NC_009334.1	Human herpesvirus 4, complete genome	34581	`_____.........ta..c._______`	34595	44
NC_009334.1	Human herpesvirus 4, complete genome	63694	`____________.........tc..c.`	63708	44
NC_009334.1	Human herpesvirus 4, complete genome	104336	`__...g..cttt.ac.........___`	104357	55
NC_009334.1	Human herpesvirus 4, complete genome	10050	`_______________.t........._`	10060	37
NC_009334.1	Human herpesvirus 4, complete genome	47588	`________________.........c.`	47598	37
NC_009334.1	Human herpesvirus 4, complete genome	60250	`________________.c.........`	60260	37
NC_009334.1	Human herpesvirus 4, complete genome	51843	`____________.........______`	51851	33
NC_009334.1	Human herpesvirus 4, complete genome	72573	`____________.........______`	72581	33
NC_009334.1	Human herpesvirus 4, complete genome	105850	`____________.........______`	105858	33
NC_009334.1	Human herpesvirus 4, complete genome	107636	`_........._________________`	107628	33
NC_009334.1	Human herpesvirus 4, complete genome	115163	`____________.........______`	115171	33
NC_009334.1	Human herpesvirus 4, complete genome	136951	`________.........__________`	136943	33
NC_009334.1	Human herpesvirus 4, complete genome	141576	`___........._______________`	141568	33
NC_009334.1	Human herpesvirus 4, complete genome	149606	`_____........._____________`	149598	33
NC_009334.1	Human herpesvirus 4, complete genome	164705	`_________........._________`	164697	33
NC_009334.1	Human herpesvirus 4, complete genome	167300	`___________........._______`	167292	33

VIRsiRNAdb

Database of Viral siRNA / shRNA