../../tmp/servers/virsirnadb/1259535710
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1774 | 1 | gaaattggctcgaattgtt | 19 | |
| U22522.1 | ETU22522 Human enterovirus 71 polyprotein gene, complete cds | 7306 | ................... | 7324 | 100 |
| AF119795.2 | Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds | 7303 | ................... | 7321 | 100 |
| AF136379.1 | Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds | 7305 | ................... | 7323 | 100 |
| AF119796.3 | Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds | 7303 | ................... | 7321 | 100 |
| AF176044.1 | Enterovirus 71 polyprotein gene, complete cds | 7306 | ................... | 7324 | 100 |
| AF304457.1 | Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds | 7305 | ................... | 7323 | 100 |
| AF304458.1 | Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds | 7305 | ................... | 7323 | 100 |
| AF304459.1 | Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds | 7305 | ................... | 7323 | 100 |
| AF316321.2 | Enterovirus 5865/sin/000009, complete genome | 7306 | ................... | 7324 | 100 |
| AF352027.1 | Enterovirus 5666/sin/002209, complete genome | 7306 | ................... | 7324 | 100 |
| AY421767.1 | Human coxsackievirus A10 strain Kowalik, complete genome | 7304 | ................... | 7322 | 100 |
| AJ586873.1 | Human enterovirus 71 gene for polyprotein, isolate EV71/9/97/SHA89 | 7306 | ................... | 7324 | 100 |
| DQ060149.1 | Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome | 7305 | ................... | 7323 | 100 |
| DQ341357.1 | Human enterovirus 71 isolate 7F-AUS-6-99, complete genome | 7304 | ................... | 7322 | 100 |
| DQ341358.1 | Human enterovirus 71 isolate S40221-SAR-00, complete genome | 7304 | ................... | 7322 | 100 |
| DQ341359.1 | Human enterovirus 71 isolate S10862-SAR-98, complete genome | 7304 | ................... | 7322 | 100 |
| DQ341365.1 | Human enterovirus 71 isolate PP37-MAL-01, complete genome | 7306 | ................... | 7324 | 100 |
| DQ341366.1 | Human enterovirus 71 isolate SB2864-SAR-00, complete genome | 7306 | ................... | 7324 | 100 |
| DQ381846.1 | Human enterovirus 71 strain 6F/AUS/6/99, complete genome | 7304 | ................... | 7322 | 100 |
| AM396584.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 7303 | ................... | 7321 | 100 |
| AM396585.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 7303 | ................... | 7321 | 100 |
| AM396587.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate UH1/P | 7306 | ................... | 7324 | 100 |
| EF063152.1 | Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd | 7304 | ................... | 7322 | 100 |
| EF373575.1 | Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet | 7308 | ................... | 7326 | 100 |
| EU414334.1 | Human enterovirus 71 strain PLday4-CH-06, complete genome | 7303 | ................... | 7321 | 100 |
| EU414335.1 | Human enterovirus 71 strain PLday1-CH-06, complete genome | 7303 | ................... | 7321 | 100 |
| AB482183.1 | Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya | 7307 | ................... | 7325 | 100 |
| HQ189392.1 | Human enterovirus 71 isolate HUN/1978, complete genome | 7307 | ................... | 7325 | 100 |
| AB550332.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org | 7304 | ................... | 7322 | 100 |
| AB550333.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 | 7304 | ................... | 7322 | 100 |
| AB550336.1 | Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-o | 7307 | ................... | 7325 | 100 |
| AB550337.1 | Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-L | 7307 | ................... | 7325 | 100 |
| AB550340.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org | 7304 | ................... | 7322 | 100 |
| AB550341.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS | 7304 | ................... | 7322 | 100 |
| AB575913.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 119 | 7232 | ................... | 7250 | 100 |
| AB575914.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 170 | 7241 | ................... | 7259 | 100 |
| AB575918.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 205 | 7243 | ................... | 7261 | 100 |
| AB575923.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 202 | 7249 | ................... | 7267 | 100 |
| AB575935.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 480 | 7248 | ................... | 7266 | 100 |
| AB575936.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 961 | 7243 | ................... | 7261 | 100 |
| AB575939.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 365 | 7235 | ................... | 7253 | 100 |
| AY421760.1 | Human coxsackievirus A2 strain Fleetwood, complete genome | 7293 | .g................. | 7311 | 94 |
| AY421761.1 | Human coxsackievirus A3 strain Olson, complete genome | 7290 | ................a.. | 7308 | 94 |
| AY421768.1 | Human coxsackievirus A12 strain Texas-12, complete genome | 7299 | ................a.. | 7317 | 94 |
| DQ341355.1 | Human enterovirus 71 isolate 06-KOR-00, complete genome | 7304 | ................a.. | 7322 | 94 |
| DQ341356.1 | Human enterovirus 71 isolate 03-KOR-00, complete genome | 7304 | ................a.. | 7322 | 94 |
| DQ341360.1 | Human enterovirus 71 isolate J115-MAL-01, complete genome | 7303 | ..........t........ | 7321 | 94 |
| DQ341361.1 | Human enterovirus 71 isolate 1M-AUS-12-00, complete genome | 7304 | ..........t........ | 7322 | 94 |
| DQ341362.1 | Human enterovirus 71 isolate SB12736-SAR-03, complete genome | 7307 | ................a.. | 7325 | 94 |
| DQ341363.1 | Human enterovirus 71 isolate S19841-SAR-03, complete genome | 7307 | ................a.. | 7325 | 94 |
| DQ341364.1 | Human enterovirus 71 isolate 5511-SIN-00, complete genome | 7307 | ................a.. | 7325 | 94 |
| EU262658.1 | Human coxsackievirus A16 strain shzh05-1, complete genome | 7305 | ................a.. | 7323 | 94 |
| FJ172159.1 | Human enterovirus 71 isolate NUH0075/SIN/08, complete genome | 7265 | .g................. | 7283 | 94 |
| FJ461781.1 | Human enterovirus 71 isolate NUH0083/SIN/08, complete genome | 7271 | ................a.. | 7289 | 94 |
| FJ606450.1 | Human enterovirus 71 strain BJ08-Z025-5, complete genome | 7302 | .t................. | 7320 | 94 |
| FJ607337.1 | Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co | 7301 | .t................. | 7319 | 94 |
| AB575915.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 944 | 7252 | ..............c.... | 7270 | 94 |
| AB575916.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 161 | 7243 | ..............c.... | 7261 | 94 |
| AB575927.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 113 | 7242 | ................a.. | 7260 | 94 |
| AB575928.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 115 | 7243 | ................a.. | 7261 | 94 |
| AB575937.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 141 | 7216 | ..........t........ | 7234 | 94 |
| AB575938.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100 | 7277 | ..........t........ | 7295 | 94 |
| AB575941.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 248 | 7243 | .g................. | 7261 | 94 |
| AB575942.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 369 | 7238 | .g................. | 7256 | 94 |
| AB575948.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101 | 7261 | .g................. | 7279 | 94 |
| HQ423141.1 | Human coxsackievirus A16 strain KMM/08, complete genome | 7305 | ................a.. | 7323 | 94 |
| HQ423142.1 | Human enterovirus 71 strain KMM/09, complete genome | 7302 | .c................. | 7320 | 94 |
| HQ423143.1 | Human enterovirus 71 strain KM186/09, complete genome | 7302 | .c................. | 7320 | 94 |
| U22521.1 | ETU22521 Human enterovirus 71 polyprotein gene, complete cds | 7303 | .............g..a.. | 7321 | 89 |
| AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 7305 | .g..............a.. | 7323 | 89 |
| AY421763.1 | Human coxsackievirus A5 strain Swartz, complete genome | 7295 | .g..............a.. | 7313 | 89 |
| AY421764.1 | Human coxsackievirus A6 strain Gdula, complete genome | 7329 | ..............c.a.. | 7347 | 89 |
| AY421765.1 | Human coxsackievirus A7 strain Parker, complete genome | 7299 | ..........t.....a.. | 7317 | 89 |
| AY421766.1 | Human coxsackievirus A8 strain Donovan, complete genome | 7291 | ..............c.a.. | 7309 | 89 |
| AY421769.1 | Human coxsackievirus A14 strain G-14, complete genome | 7312 | .t..............a.. | 7330 | 89 |
| AY773285.1 | Human enterovirus 90 isolate F950027, complete genome | 7308 | ..........t...c.... | 7326 | 89 |
| AY697460.1 | Human enterovirus 90 polyprotein gene, complete cds | 7309 | ..........t...c.... | 7327 | 89 |
| AY697461.1 | Human enterovirus 91 polyprotein gene, complete cds | 7311 | ..........t...c.... | 7329 | 89 |
| AB204852.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR | 7303 | .............g..a.. | 7321 | 89 |
| AB204853.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts | 7303 | .............g..a.. | 7321 | 89 |
| EU131776.1 | Human enterovirus 71 strain N3340-TW-02, complete genome | 7302 | .c..............a.. | 7320 | 89 |
| EU812514.1 | Human coxsackievirus A16 strain FY18 from China, complete genome | 7311 | .c..............a.. | 7329 | 89 |
| FJ198212.1 | Human coxsackievirus A16 strain GZ08, complete genome | 7305 | .............g..a.. | 7323 | 89 |
| FJ360545.1 | Human enterovirus 71 isolate GZ-08-02, complete genome | 7302 | .c..............a.. | 7320 | 89 |
| FJ439769.1 | Human enterovirus 71 strain Fuyang-0805, complete genome | 7302 | .c..............a.. | 7320 | 89 |
| FJ606448.1 | Human enterovirus 71 strain BJ08-Z011-4, complete genome | 7302 | .c..............a.. | 7320 | 89 |
| GQ994989.1 | Human enterovirus 71 strain Chongqing1-09-China, complete genome | 7303 | .c...........g..... | 7321 | 89 |
| GU434678.1 | Human enterovirus 71 strain EV71-Hubei-09-China, complete genome | 7303 | .............g..a.. | 7321 | 89 |
| GQ279368.1 | Human coxsackievirus A16 strain SZ/HK08-3, complete genome | 7305 | ..........t.....a.. | 7323 | 89 |
| GQ279371.1 | Human coxsackievirus A16 strain SZ/HK08-7, complete genome | 7305 | .............g..a.. | 7323 | 89 |
| HQ407557.1 | Human enterovirus 71 strain LN009, complete genome | 7302 | .c..............a.. | 7320 | 89 |
| HQ325852.1 | Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome | 7303 | .c..............a.. | 7321 | 89 |
| AB575917.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101 | 7258 | ..........t...c.... | 7276 | 89 |
| HQ891925.1 | Human enterovirus 71 strain Shanghai 36-2009, complete genome | 7304 | .c..............a.. | 7322 | 89 |
| HQ891926.1 | Human enterovirus 71 strain Shanghai 51-2009, complete genome | 7304 | .c..............a.. | 7322 | 89 |
| HQ269389.1 | Human coxsackievirus A16 isolate XM-CA16-3560, complete genome | 7306 | .............g..a.. | 7324 | 89 |
| HQ456306.1 | Human enterovirus A strain GZ2010-134, complete genome | 7302 | .c..............a.. | 7320 | 89 |
| HQ456307.1 | Human enterovirus A strain GZ2010-120, complete genome | 7302 | .c..............a.. | 7320 | 89 |
| HQ456308.1 | Human enterovirus A strain GZ2010-118, complete genome | 7302 | .c..............a.. | 7320 | 89 |
| HQ456313.1 | Human enterovirus A strain GZ2010-95, complete genome | 7302 | .c..............a.. | 7320 | 89 |
| AF302996.1 | Enterovirus 71 strain SHZH98 polyprotein gene, complete cds | 7303 | .c...........g..a.. | 7321 | 84 |
| AY465356.1 | Human enterovirus 71 strain SHZH03, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| AY421762.1 | Human coxsackievirus A4 strain High Point, complete genome | 7331 | .c............c.a.. | 7349 | 84 |
| AY697459.1 | Human enterovirus 89 polyprotein gene, complete cds | 7313 | ..........t...c.a.. | 7331 | 84 |
| DQ133458.1 | Human enterovirus 71 strain 984 polyprotein gene, complete cds | 7302 | .t...........g..a.. | 7320 | 84 |
| DQ133459.1 | Human enterovirus 71 strain 1235 polyprotein gene, complete cds | 7302 | .c...........g..a.. | 7320 | 84 |
| DQ341354.1 | Human enterovirus 71 isolate 3799-SIN-98, complete genome | 7307 | .c............c.a.. | 7325 | 84 |
| DQ341367.1 | Human enterovirus 71 isolate MY821-3-SAR-97, complete genome | 7306 | .c............c.a.. | 7324 | 84 |
| DQ341368.1 | Human enterovirus 71 isolate MY104-9-SAR-97, complete genome | 7306 | .c............c.a.. | 7324 | 84 |
| AM396586.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 7306 | .c............c.a.. | 7324 | 84 |
| AM396588.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 7297 | .c............c.a.. | 7315 | 84 |
| EF373576.1 | Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet | 7302 | .c...........g..a.. | 7320 | 84 |
| EU364841.1 | Human enterovirus 71 strain 26M/AUS/4/99, complete genome | 7307 | .c............c.a.. | 7325 | 84 |
| EU376004.1 | Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome | 7307 | .c............c.a.. | 7325 | 84 |
| EU376005.1 | Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome | 7307 | .c............c.a.. | 7325 | 84 |
| EU703812.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete | 7302 | .c...........g..a.. | 7320 | 84 |
| EU703813.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete | 7302 | .c...........g..a.. | 7320 | 84 |
| EU703814.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete | 7302 | .c...........g..a.. | 7320 | 84 |
| EU812515.1 | Human enterovirus 71 strain FY23 from China, complete genome | 7305 | .c...........g..a.. | 7323 | 84 |
| EU864507.1 | Human enterovirus 71 isolate EV71/Zhejiang08, complete genome | 7303 | .c...........g..a.. | 7321 | 84 |
| FJ158600.1 | Human enterovirus 71 isolate DTID/ZJU-62, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| FJ158601.1 | Human enterovirus 71 isolate DTID/ZJU-74, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| FJ194964.1 | Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| FJ194965.1 | Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| AB469182.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E | 7305 | .c............c.a.. | 7323 | 84 |
| AB469183.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71 | 8040 | .c............c.a.. | 8058 | 84 |
| FJ360544.1 | Human enterovirus 71 isolate GZ-08-01, complete genome | 7301 | .c...........g..a.. | 7319 | 84 |
| FJ606447.1 | Human enterovirus 71 strain BJ08-Z004-3, complete genome | 7302 | .t...........g..a.. | 7320 | 84 |
| FJ606449.1 | Human enterovirus 71 strain BJ08-Z020-1, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| FJ713137.1 | Human enterovirus 71 strain Shanghai 036-2009, complete genome | 7304 | .c...........g..a.. | 7322 | 84 |
| FJ607334.1 | Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g | 7301 | .c...........g..a.. | 7319 | 84 |
| FJ607335.1 | Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g | 7301 | .c...........g..a.. | 7319 | 84 |
| FJ607336.1 | Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete | 7300 | .c..c...........a.. | 7318 | 84 |
| FJ607338.1 | Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c | 7301 | .c...........g..a.. | 7319 | 84 |
| GQ892830.1 | Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| GQ994988.1 | Human enterovirus 71 strain Anhui1-09-China, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| GQ994990.1 | Human enterovirus 71 strain Chongqing2-09-China, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| GQ994991.1 | Human enterovirus 71 strain Chongqing3-09-China, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| GQ994992.1 | Human enterovirus 71 strain Henan2-09-China, complete genome | 7294 | .c...........g..a.. | 7312 | 84 |
| GU196833.1 | Human enterovirus 71 strain Henan1-09-China polyprotein gene, complet | 7114 | .c...........g..a.. | 7132 | 84 |
| GU366191.1 | Human enterovirus 71 strain Henan10-08-China, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| GU396280.1 | Human enterovirus 71 isolate EV71/Lanzhou01, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| GU459070.1 | Human enterovirus 71 isolate FY23-K12, complete genome | 7305 | .c...........g..a.. | 7323 | 84 |
| GU459071.1 | Human enterovirus 71 isolate FY23-K14, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| HM003207.1 | Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| GQ279369.1 | Human enterovirus 71 strain SZ/HK08-5, complete genome | 7302 | .t...........g..a.. | 7320 | 84 |
| GQ279370.1 | Human enterovirus 71 strain SZ/HK08-6, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| HM002484.1 | Human enterovirus 71 strain BJ67, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| HM002485.1 | Human enterovirus 71 strain BJ97, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| HM002486.1 | Human enterovirus 71 strain BJ110, complete genome | 7303 | .c...........g..a.. | 7321 | 84 |
| HM002487.1 | Human enterovirus 71 strain BJ303, complete genome | 7303 | .c...........g..a.. | 7321 | 84 |
| HM002488.1 | Human enterovirus 71 strain BJ366, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| HM002489.1 | Human enterovirus 71 strain BJ398, complete genome | 7303 | .c...........g..a.. | 7321 | 84 |
| HM053669.1 | Human enterovirus 71 strain BJ293, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| HM053670.1 | Human enterovirus 71 strain BJ393, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| AB550334.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o | 7305 | .c............c.a.. | 7323 | 84 |
| AB550335.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L | 7305 | .c............c.a.. | 7323 | 84 |
| AB550338.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 7301 | .c...........g..a.. | 7319 | 84 |
| AB550339.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 7301 | .c...........g..a.. | 7319 | 84 |
| HQ188292.1 | Human enterovirus 71 strain Fuyang-0805a, complete genome | 7305 | .c...........g..a.. | 7323 | 84 |
| HQ426649.1 | Human enterovirus 71 strain 2010FJLY008, complete genome | 7300 | .c............c.a.. | 7318 | 84 |
| HQ891923.1 | Human enterovirus 71 strain Shanghai 27-2009, complete genome | 7303 | .c...........g..a.. | 7321 | 84 |
| HQ891924.1 | Human enterovirus 71 strain Shanghai 28-2009, complete genome | 7303 | .c...........g..a.. | 7321 | 84 |
| HQ891927.1 | Human enterovirus 71 strain Shanghai 64-2009, complete genome | 7303 | .c...........g..a.. | 7321 | 84 |
| HQ891928.1 | Human enterovirus 71 strain Shanghai 117-2009, complete genome | 7303 | .c...........g..a.. | 7321 | 84 |
| HQ891929.1 | Human enterovirus 71 strain Shanghai 118-2009, complete genome | 7303 | .c...........g..a.. | 7321 | 84 |
| HQ400942.1 | Human enterovirus 71 HZ08/Hangzhou/2008, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| HQ456305.1 | Human enterovirus A strain GZ2010-156, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| HQ456309.1 | Human enterovirus A strain GZ08-831, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| HQ456310.1 | Human enterovirus A strain GZ08-530, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| HQ456311.1 | Human enterovirus A strain GZ08-522, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| HQ456312.1 | Human enterovirus A strain GZ08-520, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| HQ611148.1 | Human enterovirus 71 strain AH08/06, complete genome | 7302 | .c...........g..a.. | 7320 | 84 |
| JN001860.1 | Human enterovirus 71 strain NB/2010/01, complete genome | 7303 | .c...........g..a.. | 7321 | 84 |
| AY697458.1 | Human enterovirus 76 polyprotein gene, complete cds | 7322 | .r..c.....y...c.... | 7340 | 78 |
| AY560657.1 | Human poliovirus 1 strain Brunhilde, complete genome | 7354 | ..cg.........c.c... | 7372 | 78 |
| AF039205.1 | Coxsackievirus B6 strain Schmitt, complete genome | 7322 | _.....tta........._ | 7306 | 73 |
| AF162711.1 | Echovirus 30 strain Bastianni, complete genome | 4084 | __.........a..aa... | 4100 | 73 |
| AF105342.1 | Coxsackievirus B6 strain Schmitt, complete genome | 7322 | _.....tta........._ | 7306 | 73 |
| AF114384.1 | Coxsackievirus B6 strain Schmitt, complete genome | 7321 | _.....tta........._ | 7305 | 73 |
| AF311938.1 | Human echovirus 30 strain Bastianni, complete genome | 4089 | __.........a..aa... | 4105 | 73 |
| AF448782.1 | Human poliovirus 2 strain EGY88-074, complete genome | 7353 | ____.........c.c... | 7367 | 68 |
| AF499637.1 | Human coxsackievirus A13 strain Flores, complete genome | 7372 | ____.........c.c... | 7386 | 68 |
| AF465511.1 | Human coxsackievirus A13 strain Flores, complete genome | 7372 | ____.........c.c... | 7386 | 68 |
| AF111966.2 | Human poliovirus 1 isolate CHN-Hainan/93-2, complete genome | 7358 | ____.........c..a.. | 7372 | 68 |
| AB205396.1 | Human coxsackievirus A18 genomic RNA, complete genome, strain: CAM197 | 7374 | ____.........c.c... | 7388 | 68 |
| AF328683.1 | Human coxsackievirus B4 polyprotein-like gene, complete sequence | 1421 | ____..t.t.......... | 1407 | 68 |
| AY302540.1 | Human echovirus 14 strain Tow complete genome | 7374 | ..........t..______ | 7386 | 63 |
| EF174468.1 | Human coxsackievirus B2 isolate KOR 04-243, complete genome | 6078 | _..........t.._____ | 6066 | 63 |
| AY843297.1 | Human enterovirus 79 strain USA/CA79-10384, complete genome | 7356 | __...........______ | 7366 | 57 |
| EF634316.1 | Human echovirus 11 strain D207, complete genome | 7359 | __...........______ | 7369 | 57 |