VIRsiRNAdb

../../tmp/servers/virsirnadb/248897078
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi1283	1	`gaaccactgcaactttggt`	19
AF177911.1	Coxsackievirus A16 polyprotein gene, complete cds	1574	`_..................`	1591	94
AY790926.1	Human coxsackievirus A16 strain shzh00-1, complete genome	1574	`_..................`	1591	94
EU262658.1	Human coxsackievirus A16 strain shzh05-1, complete genome	1574	`_..................`	1591	94
FJ606447.1	Human enterovirus 71 strain BJ08-Z004-3, complete genome	1570	`.................._`	1587	94
GQ279371.1	Human coxsackievirus A16 strain SZ/HK08-7, complete genome	1574	`_..................`	1591	94
HM053671.1	Human enterovirus 71 strain BJ462, complete genome	1570	`.................._`	1587	94
AB550338.1	Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat	1569	`.................._`	1586	94
AB550339.1	Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat	1569	`.................._`	1586	94
HQ269389.1	Human coxsackievirus A16 isolate XM-CA16-3560, complete genome	1575	`_..................`	1592	94
DQ341358.1	Human enterovirus 71 isolate S40221-SAR-00, complete genome	1572	`......t............`	1590	94
DQ341360.1	Human enterovirus 71 isolate J115-MAL-01, complete genome	1571	`......t............`	1589	94
DQ341361.1	Human enterovirus 71 isolate 1M-AUS-12-00, complete genome	1572	`......t............`	1590	94
DQ452074.1	Human enterovirus 71 strain 804/NO/03, complete genome	1573	`......t............`	1591	94
FJ194965.1	Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome	1570	`......t............`	1588	94
GQ892830.1	Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome	1570	`......t............`	1588	94
AB550340.1	Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org	1572	`......t............`	1590	94
AB550341.1	Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS	1572	`......t............`	1590	94
AB575937.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 141	1484	`......t............`	1502	94
AF302996.1	Enterovirus 71 strain SHZH98 polyprotein gene, complete cds	1571	`.........t........_`	1588	89
AF316321.2	Enterovirus 5865/sin/000009, complete genome	1574	`......t..........._`	1591	89
AF352027.1	Enterovirus 5666/sin/002209, complete genome	1574	`......t..........._`	1591	89
DQ133458.1	Human enterovirus 71 strain 984 polyprotein gene, complete cds	1570	`.........t........_`	1587	89
DQ133459.1	Human enterovirus 71 strain 1235 polyprotein gene, complete cds	1570	`.........t........_`	1587	89
DQ341357.1	Human enterovirus 71 isolate 7F-AUS-6-99, complete genome	1572	`......t..........._`	1589	89
DQ341357.1	Human enterovirus 71 isolate 7F-AUS-6-99, complete genome	325	`..g..........______`	337	63
DQ341366.1	Human enterovirus 71 isolate SB2864-SAR-00, complete genome	1574	`......t..........._`	1591	89
DQ341367.1	Human enterovirus 71 isolate MY821-3-SAR-97, complete genome	1574	`......t..........._`	1591	89
EF063152.1	Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd	1572	`......t..........._`	1589	89
EF373575.1	Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet	1576	`............t....._`	1593	89
EF373576.1	Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet	1570	`.........t........_`	1587	89
EU131776.1	Human enterovirus 71 strain N3340-TW-02, complete genome	1570	`.........t........_`	1587	89
EU703812.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete	1570	`......t..........._`	1587	89
EU703814.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete	1570	`......t..........._`	1587	89
EU812515.1	Human enterovirus 71 strain FY23 from China, complete genome	1573	`......t..........._`	1590	89
EU864507.1	Human enterovirus 71 isolate EV71/Zhejiang08, complete genome	1571	`......t..........._`	1588	89
FJ158600.1	Human enterovirus 71 isolate DTID/ZJU-62, complete genome	1570	`......t..........._`	1587	89
FJ158601.1	Human enterovirus 71 isolate DTID/ZJU-74, complete genome	1570	`......t..........._`	1587	89
FJ360544.1	Human enterovirus 71 isolate GZ-08-01, complete genome	1569	`......t..........._`	1586	89
FJ360545.1	Human enterovirus 71 isolate GZ-08-02, complete genome	1570	`......t..........._`	1587	89
FJ360546.1	Human enterovirus 71 isolate GZ-08-03, complete genome	1569	`......t..........._`	1586	89
FJ439769.1	Human enterovirus 71 strain Fuyang-0805, complete genome	1570	`......t..........._`	1587	89
FJ606449.1	Human enterovirus 71 strain BJ08-Z020-1, complete genome	1570	`......t..........._`	1587	89
FJ606450.1	Human enterovirus 71 strain BJ08-Z025-5, complete genome	1570	`......t..........._`	1587	89
AB482183.1	Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya	1575	`......t..........._`	1592	89
AB482183.1	Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya	328	`..g..........______`	340	63
FJ828519.1	Human enterovirus 71 isolate BJ08, complete genome	1549	`......t..........._`	1566	89
FJ607334.1	Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g	1569	`......t..........._`	1586	89
FJ607335.1	Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g	1569	`......t..........._`	1586	89
FJ607336.1	Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete	1568	`......t..........._`	1585	89
FJ607337.1	Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co	1569	`......t..........._`	1586	89
FJ607338.1	Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c	1569	`......t..........._`	1586	89
GQ994988.1	Human enterovirus 71 strain Anhui1-09-China, complete genome	1570	`......t..........._`	1587	89
GQ994990.1	Human enterovirus 71 strain Chongqing2-09-China, complete genome	1570	`......t..........._`	1587	89
GQ994991.1	Human enterovirus 71 strain Chongqing3-09-China, complete genome	1570	`......t..........._`	1587	89
GQ994992.1	Human enterovirus 71 strain Henan2-09-China, complete genome	1562	`.........t........_`	1579	89
GU366191.1	Human enterovirus 71 strain Henan10-08-China, complete genome	1570	`......t..........._`	1587	89
GU396280.1	Human enterovirus 71 isolate EV71/Lanzhou01, complete genome	1570	`......t..........._`	1587	89
GU459070.1	Human enterovirus 71 isolate FY23-K12, complete genome	1573	`......t..........._`	1590	89
GU459071.1	Human enterovirus 71 isolate FY23-K14, complete genome	1570	`......t..........._`	1587	89
HM003207.1	Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome	1570	`......t..........._`	1587	89
GQ279368.1	Human coxsackievirus A16 strain SZ/HK08-3, complete genome	1574	`_...........t......`	1591	89
GQ279369.1	Human enterovirus 71 strain SZ/HK08-5, complete genome	1570	`............t....._`	1587	89
GQ279370.1	Human enterovirus 71 strain SZ/HK08-6, complete genome	1570	`......t..........._`	1587	89
HM002484.1	Human enterovirus 71 strain BJ67, complete genome	1570	`......t..........._`	1587	89
HM002485.1	Human enterovirus 71 strain BJ97, complete genome	1570	`......t..........._`	1587	89
HM002488.1	Human enterovirus 71 strain BJ366, complete genome	1570	`......t..........._`	1587	89
HM002489.1	Human enterovirus 71 strain BJ398, complete genome	1571	`......t..........._`	1588	89
HM053669.1	Human enterovirus 71 strain BJ293, complete genome	1570	`......t..........._`	1587	89
HM053670.1	Human enterovirus 71 strain BJ393, complete genome	1570	`......t..........._`	1587	89
HQ189392.1	Human enterovirus 71 isolate HUN/1978, complete genome	1575	`......t..........._`	1592	89
HQ188292.1	Human enterovirus 71 strain Fuyang-0805a, complete genome	1573	`.........t........_`	1590	89
AB575911.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100	1509	`............t....._`	1526	89
AB575912.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 108	1523	`............t....._`	1540	89
AB575915.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 944	1520	`......t..........._`	1537	89
AB575915.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 944	273	`..g..........______`	285	63
AB575916.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 161	1511	`......t..........._`	1528	89
AB575916.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 161	264	`..g..........______`	276	63
AB575918.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 205	1511	`......t..........._`	1528	89
AB575918.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 205	264	`..g..........______`	276	63
AB575936.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 961	1511	`......t..........._`	1528	89
AB575938.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100	1546	`_.....t............`	1563	89
HQ891923.1	Human enterovirus 71 strain Shanghai 27-2009, complete genome	1571	`......t..........._`	1588	89
HQ891924.1	Human enterovirus 71 strain Shanghai 28-2009, complete genome	1571	`......t..........._`	1588	89
HQ891925.1	Human enterovirus 71 strain Shanghai 36-2009, complete genome	1572	`......t..........._`	1589	89
HQ891927.1	Human enterovirus 71 strain Shanghai 64-2009, complete genome	1571	`......t..........._`	1588	89
HQ891928.1	Human enterovirus 71 strain Shanghai 117-2009, complete genome	1571	`......t..........._`	1588	89
HQ891929.1	Human enterovirus 71 strain Shanghai 118-2009, complete genome	1571	`......t..........._`	1588	89
HQ423141.1	Human coxsackievirus A16 strain KMM/08, complete genome	1574	`_...........t......`	1591	89
HQ423143.1	Human enterovirus 71 strain KM186/09, complete genome	1570	`.........t........_`	1587	89
HQ456309.1	Human enterovirus A strain GZ08-831, complete genome	1570	`......t..........._`	1587	89
HQ456310.1	Human enterovirus A strain GZ08-530, complete genome	1570	`......t..........._`	1587	89
HQ456310.1	Human enterovirus A strain GZ08-530, complete genome	3976	`____.........c...._`	3989	68
HQ456311.1	Human enterovirus A strain GZ08-522, complete genome	1570	`......t..........._`	1587	89
HQ456312.1	Human enterovirus A strain GZ08-520, complete genome	1570	`......t..........._`	1587	89
HQ456313.1	Human enterovirus A strain GZ2010-95, complete genome	1570	`......t..........._`	1587	89
HQ611148.1	Human enterovirus 71 strain AH08/06, complete genome	1570	`......t..........._`	1587	89
JN001860.1	Human enterovirus 71 strain NB/2010/01, complete genome	1571	`......t..........._`	1588	89
AY773285.1	Human enterovirus 90 isolate F950027, complete genome	1579	`................___`	1594	84
AF119795.2	Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds	1571	`......t..t.........`	1589	89
AF136379.1	Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds	1573	`......t..t.........`	1591	89
AF119796.3	Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds	1571	`......t..t.........`	1589	89
AF176044.1	Enterovirus 71 polyprotein gene, complete cds	1574	`......t..t.........`	1592	89
AF304457.1	Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds	1573	`......t..t.........`	1591	89
AF304458.1	Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds	1573	`......t..t.........`	1591	89
AF304459.1	Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds	1573	`......t..t.........`	1591	89
AY465356.1	Human enterovirus 71 strain SHZH03, complete genome	1570	`.........t..t......`	1588	89
DQ060149.1	Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome	1573	`......t..t.........`	1591	89
DQ381846.1	Human enterovirus 71 strain 6F/AUS/6/99, complete genome	1572	`......t..t.........`	1590	89
DQ381846.1	Human enterovirus 71 strain 6F/AUS/6/99, complete genome	325	`..g..........______`	337	63
AM396584.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P	1571	`......t..t.........`	1589	89
AM396585.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P	1571	`......t..t.........`	1589	89
EF667344.1	Human enterovirus 92 strain RJG7, complete genome	1533	`.........t..t......`	1551	89
EU414334.1	Human enterovirus 71 strain PLday4-CH-06, complete genome	1571	`...t..t............`	1589	89
EU414335.1	Human enterovirus 71 strain PLday1-CH-06, complete genome	1571	`...t..t............`	1589	89
FJ194964.1	Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome	1570	`.........t.....c...`	1588	89
AB550332.1	Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org	1572	`......t..t.........`	1590	89
AB550333.1	Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1	1572	`......t..t.........`	1590	89
EU812514.1	Human coxsackievirus A16 strain FY18 from China, complete genome	1580	`_.....t..........._`	1596	84
AY421769.1	Human coxsackievirus A14 strain G-14, complete genome	1583	`.........t..t....._`	1600	84
DQ341365.1	Human enterovirus 71 isolate PP37-MAL-01, complete genome	1574	`...t..t..........._`	1591	84
EF667343.1	Simian enterovirus 46 strain RNM5, complete genome	1561	`...t..t..........._`	1578	84
FJ606448.1	Human enterovirus 71 strain BJ08-Z011-4, complete genome	1570	`...t..t..........._`	1587	84
GQ994989.1	Human enterovirus 71 strain Chongqing1-09-China, complete genome	1571	`.........t.....c.._`	1588	84
HQ407557.1	Human enterovirus 71 strain LN009, complete genome	1570	`...t..t..........._`	1587	84
HQ426649.1	Human enterovirus 71 strain 2010FJLY008, complete genome	1568	`...t..t..........._`	1585	84
HQ325852.1	Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome	1571	`...t..t..........._`	1588	84
HQ891926.1	Human enterovirus 71 strain Shanghai 51-2009, complete genome	1572	`...t..t..........._`	1589	84
HQ423142.1	Human enterovirus 71 strain KMM/09, complete genome	1570	`.........t.....c.._`	1587	84
HQ456306.1	Human enterovirus A strain GZ2010-134, complete genome	1570	`...t..t..........._`	1587	84
HQ456307.1	Human enterovirus A strain GZ2010-120, complete genome	1570	`...t..t..........._`	1587	84
HQ456308.1	Human enterovirus A strain GZ2010-118, complete genome	1570	`...t..t..........._`	1587	84
AY697460.1	Human enterovirus 90 polyprotein gene, complete cds	1580	`...t............___`	1595	78
AB192877.1	Human enterovirus 90 genomic RNA, complete genome	1580	`...t............___`	1595	78
U22521.1	ETU22521 Human enterovirus 71 polyprotein gene, complete cds	1571	`.........t..t..c.._`	1588	78
AB204852.1	Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR	1571	`.........t..t..c.._`	1588	78
AB204853.1	Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts	1571	`.........t..t..c.._`	1588	78
AJ493062.2	Human enterovirus 77 gene for polyprotein, genomic RNA, isolate CF496	1434	`............g.g.___`	1449	73
AY421763.1	Human coxsackievirus A5 strain Swartz, complete genome	3969	`____...a.........._`	3982	68
AF111953.2	Human poliovirus 1 isolate CHN-Hebei/91-2, complete genome	1568	`_______............`	1579	63
AF111961.2	Human poliovirus 1 isolate CHN-Guangdong/92-2, complete genome	1568	`_______............`	1579	63
AF111966.2	Human poliovirus 1 isolate CHN-Hainan/93-2, complete genome	1568	`_______............`	1579	63
AF111982.2	Human poliovirus 1 isolate CHN-Yunnan/92, complete genome	1568	`_______............`	1579	63
AF111983.3	Human poliovirus 1 isolate CHN-Henan/91-3, complete genome	1568	`_______............`	1579	63
AF111984.2	Human poliovirus 1 isolate CHN-Jiangxi/89-1, complete genome	1567	`_______............`	1578	63
EF555645.1	Human enterovirus 102, complete genome	5546	`.t.a.........g...__`	5530	73
AY421767.1	Human coxsackievirus A10 strain Kowalik, complete genome	1576	`_..t..ta.........._`	1592	73
FJ198212.1	Human coxsackievirus A16 strain GZ08, complete genome	5280	`__..a.........ac...`	5264	73
AB575939.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 365	256	`..g..........______`	268	63
X67706.1	Coxsackievirus B5 complete genome	1352	`_______..........._`	1362	57
AY302541.1	Human echovirus 15 strain CH 96-51 complete genome	3016	`_____...........___`	3026	57

VIRsiRNAdb

Database of Viral siRNA / shRNA