../../tmp/servers/virsirnadb/248897078
Result for your query siRNA sequence
RED | =100 % Complementary sequence |
. | =Identical residue |
blue alphabets | =mismatch |
_ | =Gap |
Acc number | Strain name | Start | Alignment | End | % Identity |
Query | virsi1283 | 1 | gaaccactgcaactttggt | 19 | |
AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 1574 | _.................. | 1591 | 94 |
AY790926.1 | Human coxsackievirus A16 strain shzh00-1, complete genome | 1574 | _.................. | 1591 | 94 |
EU262658.1 | Human coxsackievirus A16 strain shzh05-1, complete genome | 1574 | _.................. | 1591 | 94 |
FJ606447.1 | Human enterovirus 71 strain BJ08-Z004-3, complete genome | 1570 | .................._ | 1587 | 94 |
GQ279371.1 | Human coxsackievirus A16 strain SZ/HK08-7, complete genome | 1574 | _.................. | 1591 | 94 |
HM053671.1 | Human enterovirus 71 strain BJ462, complete genome | 1570 | .................._ | 1587 | 94 |
AB550338.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 1569 | .................._ | 1586 | 94 |
AB550339.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 1569 | .................._ | 1586 | 94 |
HQ269389.1 | Human coxsackievirus A16 isolate XM-CA16-3560, complete genome | 1575 | _.................. | 1592 | 94 |
DQ341358.1 | Human enterovirus 71 isolate S40221-SAR-00, complete genome | 1572 | ......t............ | 1590 | 94 |
DQ341360.1 | Human enterovirus 71 isolate J115-MAL-01, complete genome | 1571 | ......t............ | 1589 | 94 |
DQ341361.1 | Human enterovirus 71 isolate 1M-AUS-12-00, complete genome | 1572 | ......t............ | 1590 | 94 |
DQ452074.1 | Human enterovirus 71 strain 804/NO/03, complete genome | 1573 | ......t............ | 1591 | 94 |
FJ194965.1 | Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome | 1570 | ......t............ | 1588 | 94 |
GQ892830.1 | Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome | 1570 | ......t............ | 1588 | 94 |
AB550340.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org | 1572 | ......t............ | 1590 | 94 |
AB550341.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS | 1572 | ......t............ | 1590 | 94 |
AB575937.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 141 | 1484 | ......t............ | 1502 | 94 |
AF302996.1 | Enterovirus 71 strain SHZH98 polyprotein gene, complete cds | 1571 | .........t........_ | 1588 | 89 |
AF316321.2 | Enterovirus 5865/sin/000009, complete genome | 1574 | ......t..........._ | 1591 | 89 |
AF352027.1 | Enterovirus 5666/sin/002209, complete genome | 1574 | ......t..........._ | 1591 | 89 |
DQ133458.1 | Human enterovirus 71 strain 984 polyprotein gene, complete cds | 1570 | .........t........_ | 1587 | 89 |
DQ133459.1 | Human enterovirus 71 strain 1235 polyprotein gene, complete cds | 1570 | .........t........_ | 1587 | 89 |
DQ341357.1 | Human enterovirus 71 isolate 7F-AUS-6-99, complete genome | 1572 | ......t..........._ | 1589 | 89 |
DQ341357.1 | Human enterovirus 71 isolate 7F-AUS-6-99, complete genome | 325 | ..g..........______ | 337 | 63 |
DQ341366.1 | Human enterovirus 71 isolate SB2864-SAR-00, complete genome | 1574 | ......t..........._ | 1591 | 89 |
DQ341367.1 | Human enterovirus 71 isolate MY821-3-SAR-97, complete genome | 1574 | ......t..........._ | 1591 | 89 |
EF063152.1 | Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd | 1572 | ......t..........._ | 1589 | 89 |
EF373575.1 | Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet | 1576 | ............t....._ | 1593 | 89 |
EF373576.1 | Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet | 1570 | .........t........_ | 1587 | 89 |
EU131776.1 | Human enterovirus 71 strain N3340-TW-02, complete genome | 1570 | .........t........_ | 1587 | 89 |
EU703812.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete | 1570 | ......t..........._ | 1587 | 89 |
EU703814.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete | 1570 | ......t..........._ | 1587 | 89 |
EU812515.1 | Human enterovirus 71 strain FY23 from China, complete genome | 1573 | ......t..........._ | 1590 | 89 |
EU864507.1 | Human enterovirus 71 isolate EV71/Zhejiang08, complete genome | 1571 | ......t..........._ | 1588 | 89 |
FJ158600.1 | Human enterovirus 71 isolate DTID/ZJU-62, complete genome | 1570 | ......t..........._ | 1587 | 89 |
FJ158601.1 | Human enterovirus 71 isolate DTID/ZJU-74, complete genome | 1570 | ......t..........._ | 1587 | 89 |
FJ360544.1 | Human enterovirus 71 isolate GZ-08-01, complete genome | 1569 | ......t..........._ | 1586 | 89 |
FJ360545.1 | Human enterovirus 71 isolate GZ-08-02, complete genome | 1570 | ......t..........._ | 1587 | 89 |
FJ360546.1 | Human enterovirus 71 isolate GZ-08-03, complete genome | 1569 | ......t..........._ | 1586 | 89 |
FJ439769.1 | Human enterovirus 71 strain Fuyang-0805, complete genome | 1570 | ......t..........._ | 1587 | 89 |
FJ606449.1 | Human enterovirus 71 strain BJ08-Z020-1, complete genome | 1570 | ......t..........._ | 1587 | 89 |
FJ606450.1 | Human enterovirus 71 strain BJ08-Z025-5, complete genome | 1570 | ......t..........._ | 1587 | 89 |
AB482183.1 | Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya | 1575 | ......t..........._ | 1592 | 89 |
AB482183.1 | Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya | 328 | ..g..........______ | 340 | 63 |
FJ828519.1 | Human enterovirus 71 isolate BJ08, complete genome | 1549 | ......t..........._ | 1566 | 89 |
FJ607334.1 | Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g | 1569 | ......t..........._ | 1586 | 89 |
FJ607335.1 | Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g | 1569 | ......t..........._ | 1586 | 89 |
FJ607336.1 | Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete | 1568 | ......t..........._ | 1585 | 89 |
FJ607337.1 | Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co | 1569 | ......t..........._ | 1586 | 89 |
FJ607338.1 | Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c | 1569 | ......t..........._ | 1586 | 89 |
GQ994988.1 | Human enterovirus 71 strain Anhui1-09-China, complete genome | 1570 | ......t..........._ | 1587 | 89 |
GQ994990.1 | Human enterovirus 71 strain Chongqing2-09-China, complete genome | 1570 | ......t..........._ | 1587 | 89 |
GQ994991.1 | Human enterovirus 71 strain Chongqing3-09-China, complete genome | 1570 | ......t..........._ | 1587 | 89 |
GQ994992.1 | Human enterovirus 71 strain Henan2-09-China, complete genome | 1562 | .........t........_ | 1579 | 89 |
GU366191.1 | Human enterovirus 71 strain Henan10-08-China, complete genome | 1570 | ......t..........._ | 1587 | 89 |
GU396280.1 | Human enterovirus 71 isolate EV71/Lanzhou01, complete genome | 1570 | ......t..........._ | 1587 | 89 |
GU459070.1 | Human enterovirus 71 isolate FY23-K12, complete genome | 1573 | ......t..........._ | 1590 | 89 |
GU459071.1 | Human enterovirus 71 isolate FY23-K14, complete genome | 1570 | ......t..........._ | 1587 | 89 |
HM003207.1 | Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome | 1570 | ......t..........._ | 1587 | 89 |
GQ279368.1 | Human coxsackievirus A16 strain SZ/HK08-3, complete genome | 1574 | _...........t...... | 1591 | 89 |
GQ279369.1 | Human enterovirus 71 strain SZ/HK08-5, complete genome | 1570 | ............t....._ | 1587 | 89 |
GQ279370.1 | Human enterovirus 71 strain SZ/HK08-6, complete genome | 1570 | ......t..........._ | 1587 | 89 |
HM002484.1 | Human enterovirus 71 strain BJ67, complete genome | 1570 | ......t..........._ | 1587 | 89 |
HM002485.1 | Human enterovirus 71 strain BJ97, complete genome | 1570 | ......t..........._ | 1587 | 89 |
HM002488.1 | Human enterovirus 71 strain BJ366, complete genome | 1570 | ......t..........._ | 1587 | 89 |
HM002489.1 | Human enterovirus 71 strain BJ398, complete genome | 1571 | ......t..........._ | 1588 | 89 |
HM053669.1 | Human enterovirus 71 strain BJ293, complete genome | 1570 | ......t..........._ | 1587 | 89 |
HM053670.1 | Human enterovirus 71 strain BJ393, complete genome | 1570 | ......t..........._ | 1587 | 89 |
HQ189392.1 | Human enterovirus 71 isolate HUN/1978, complete genome | 1575 | ......t..........._ | 1592 | 89 |
HQ188292.1 | Human enterovirus 71 strain Fuyang-0805a, complete genome | 1573 | .........t........_ | 1590 | 89 |
AB575911.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100 | 1509 | ............t....._ | 1526 | 89 |
AB575912.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 108 | 1523 | ............t....._ | 1540 | 89 |
AB575915.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 944 | 1520 | ......t..........._ | 1537 | 89 |
AB575915.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 944 | 273 | ..g..........______ | 285 | 63 |
AB575916.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 161 | 1511 | ......t..........._ | 1528 | 89 |
AB575916.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 161 | 264 | ..g..........______ | 276 | 63 |
AB575918.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 205 | 1511 | ......t..........._ | 1528 | 89 |
AB575918.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 205 | 264 | ..g..........______ | 276 | 63 |
AB575936.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 961 | 1511 | ......t..........._ | 1528 | 89 |
AB575938.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100 | 1546 | _.....t............ | 1563 | 89 |
HQ891923.1 | Human enterovirus 71 strain Shanghai 27-2009, complete genome | 1571 | ......t..........._ | 1588 | 89 |
HQ891924.1 | Human enterovirus 71 strain Shanghai 28-2009, complete genome | 1571 | ......t..........._ | 1588 | 89 |
HQ891925.1 | Human enterovirus 71 strain Shanghai 36-2009, complete genome | 1572 | ......t..........._ | 1589 | 89 |
HQ891927.1 | Human enterovirus 71 strain Shanghai 64-2009, complete genome | 1571 | ......t..........._ | 1588 | 89 |
HQ891928.1 | Human enterovirus 71 strain Shanghai 117-2009, complete genome | 1571 | ......t..........._ | 1588 | 89 |
HQ891929.1 | Human enterovirus 71 strain Shanghai 118-2009, complete genome | 1571 | ......t..........._ | 1588 | 89 |
HQ423141.1 | Human coxsackievirus A16 strain KMM/08, complete genome | 1574 | _...........t...... | 1591 | 89 |
HQ423143.1 | Human enterovirus 71 strain KM186/09, complete genome | 1570 | .........t........_ | 1587 | 89 |
HQ456309.1 | Human enterovirus A strain GZ08-831, complete genome | 1570 | ......t..........._ | 1587 | 89 |
HQ456310.1 | Human enterovirus A strain GZ08-530, complete genome | 1570 | ......t..........._ | 1587 | 89 |
HQ456310.1 | Human enterovirus A strain GZ08-530, complete genome | 3976 | ____.........c...._ | 3989 | 68 |
HQ456311.1 | Human enterovirus A strain GZ08-522, complete genome | 1570 | ......t..........._ | 1587 | 89 |
HQ456312.1 | Human enterovirus A strain GZ08-520, complete genome | 1570 | ......t..........._ | 1587 | 89 |
HQ456313.1 | Human enterovirus A strain GZ2010-95, complete genome | 1570 | ......t..........._ | 1587 | 89 |
HQ611148.1 | Human enterovirus 71 strain AH08/06, complete genome | 1570 | ......t..........._ | 1587 | 89 |
JN001860.1 | Human enterovirus 71 strain NB/2010/01, complete genome | 1571 | ......t..........._ | 1588 | 89 |
AY773285.1 | Human enterovirus 90 isolate F950027, complete genome | 1579 | ................___ | 1594 | 84 |
AF119795.2 | Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds | 1571 | ......t..t......... | 1589 | 89 |
AF136379.1 | Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds | 1573 | ......t..t......... | 1591 | 89 |
AF119796.3 | Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds | 1571 | ......t..t......... | 1589 | 89 |
AF176044.1 | Enterovirus 71 polyprotein gene, complete cds | 1574 | ......t..t......... | 1592 | 89 |
AF304457.1 | Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds | 1573 | ......t..t......... | 1591 | 89 |
AF304458.1 | Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds | 1573 | ......t..t......... | 1591 | 89 |
AF304459.1 | Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds | 1573 | ......t..t......... | 1591 | 89 |
AY465356.1 | Human enterovirus 71 strain SHZH03, complete genome | 1570 | .........t..t...... | 1588 | 89 |
DQ060149.1 | Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome | 1573 | ......t..t......... | 1591 | 89 |
DQ381846.1 | Human enterovirus 71 strain 6F/AUS/6/99, complete genome | 1572 | ......t..t......... | 1590 | 89 |
DQ381846.1 | Human enterovirus 71 strain 6F/AUS/6/99, complete genome | 325 | ..g..........______ | 337 | 63 |
AM396584.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 1571 | ......t..t......... | 1589 | 89 |
AM396585.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 1571 | ......t..t......... | 1589 | 89 |
EF667344.1 | Human enterovirus 92 strain RJG7, complete genome | 1533 | .........t..t...... | 1551 | 89 |
EU414334.1 | Human enterovirus 71 strain PLday4-CH-06, complete genome | 1571 | ...t..t............ | 1589 | 89 |
EU414335.1 | Human enterovirus 71 strain PLday1-CH-06, complete genome | 1571 | ...t..t............ | 1589 | 89 |
FJ194964.1 | Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome | 1570 | .........t.....c... | 1588 | 89 |
AB550332.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org | 1572 | ......t..t......... | 1590 | 89 |
AB550333.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 | 1572 | ......t..t......... | 1590 | 89 |
EU812514.1 | Human coxsackievirus A16 strain FY18 from China, complete genome | 1580 | _.....t..........._ | 1596 | 84 |
AY421769.1 | Human coxsackievirus A14 strain G-14, complete genome | 1583 | .........t..t....._ | 1600 | 84 |
DQ341365.1 | Human enterovirus 71 isolate PP37-MAL-01, complete genome | 1574 | ...t..t..........._ | 1591 | 84 |
EF667343.1 | Simian enterovirus 46 strain RNM5, complete genome | 1561 | ...t..t..........._ | 1578 | 84 |
FJ606448.1 | Human enterovirus 71 strain BJ08-Z011-4, complete genome | 1570 | ...t..t..........._ | 1587 | 84 |
GQ994989.1 | Human enterovirus 71 strain Chongqing1-09-China, complete genome | 1571 | .........t.....c.._ | 1588 | 84 |
HQ407557.1 | Human enterovirus 71 strain LN009, complete genome | 1570 | ...t..t..........._ | 1587 | 84 |
HQ426649.1 | Human enterovirus 71 strain 2010FJLY008, complete genome | 1568 | ...t..t..........._ | 1585 | 84 |
HQ325852.1 | Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome | 1571 | ...t..t..........._ | 1588 | 84 |
HQ891926.1 | Human enterovirus 71 strain Shanghai 51-2009, complete genome | 1572 | ...t..t..........._ | 1589 | 84 |
HQ423142.1 | Human enterovirus 71 strain KMM/09, complete genome | 1570 | .........t.....c.._ | 1587 | 84 |
HQ456306.1 | Human enterovirus A strain GZ2010-134, complete genome | 1570 | ...t..t..........._ | 1587 | 84 |
HQ456307.1 | Human enterovirus A strain GZ2010-120, complete genome | 1570 | ...t..t..........._ | 1587 | 84 |
HQ456308.1 | Human enterovirus A strain GZ2010-118, complete genome | 1570 | ...t..t..........._ | 1587 | 84 |
AY697460.1 | Human enterovirus 90 polyprotein gene, complete cds | 1580 | ...t............___ | 1595 | 78 |
AB192877.1 | Human enterovirus 90 genomic RNA, complete genome | 1580 | ...t............___ | 1595 | 78 |
U22521.1 | ETU22521 Human enterovirus 71 polyprotein gene, complete cds | 1571 | .........t..t..c.._ | 1588 | 78 |
AB204852.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR | 1571 | .........t..t..c.._ | 1588 | 78 |
AB204853.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts | 1571 | .........t..t..c.._ | 1588 | 78 |
AJ493062.2 | Human enterovirus 77 gene for polyprotein, genomic RNA, isolate CF496 | 1434 | ............g.g.___ | 1449 | 73 |
AY421763.1 | Human coxsackievirus A5 strain Swartz, complete genome | 3969 | ____...a.........._ | 3982 | 68 |
AF111953.2 | Human poliovirus 1 isolate CHN-Hebei/91-2, complete genome | 1568 | _______............ | 1579 | 63 |
AF111961.2 | Human poliovirus 1 isolate CHN-Guangdong/92-2, complete genome | 1568 | _______............ | 1579 | 63 |
AF111966.2 | Human poliovirus 1 isolate CHN-Hainan/93-2, complete genome | 1568 | _______............ | 1579 | 63 |
AF111982.2 | Human poliovirus 1 isolate CHN-Yunnan/92, complete genome | 1568 | _______............ | 1579 | 63 |
AF111983.3 | Human poliovirus 1 isolate CHN-Henan/91-3, complete genome | 1568 | _______............ | 1579 | 63 |
AF111984.2 | Human poliovirus 1 isolate CHN-Jiangxi/89-1, complete genome | 1567 | _______............ | 1578 | 63 |
EF555645.1 | Human enterovirus 102, complete genome | 5546 | .t.a.........g...__ | 5530 | 73 |
AY421767.1 | Human coxsackievirus A10 strain Kowalik, complete genome | 1576 | _..t..ta.........._ | 1592 | 73 |
FJ198212.1 | Human coxsackievirus A16 strain GZ08, complete genome | 5280 | __..a.........ac... | 5264 | 73 |
AB575939.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 365 | 256 | ..g..........______ | 268 | 63 |
X67706.1 | Coxsackievirus B5 complete genome | 1352 | _______..........._ | 1362 | 57 |
AY302541.1 | Human echovirus 15 strain CH 96-51 complete genome | 3016 | _____...........___ | 3026 | 57 |