../../tmp/servers/virsirnadb/529777220
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1748 | 1 | gcaattaaatgacagctca | 19 | |
| NC_001526.2 | Human papillomavirus type 16, complete genome | 639 | ................... | 657 | 100 |
| NC_001678.1 | Rhesus monkey papillomavirus, complete genome | 683 | .......tc.......... | 701 | 89 |
| NC_001355.1 | Human papillomavirus type 6b, complete genome | 610 | .......gta......... | 628 | 84 |
| NC_001355.1 | Human papillomavirus type 6b, complete genome | 3633 | _____..........____ | 3642 | 52 |
| NC_008582.1 | Old World harvest mouse papillomavirus, complete genome | 6458 | ___.a...c.......... | 6443 | 73 |
| NC_001694.1 | Human papillomavirus - 61, complete genome | 595 | ...g...tta......... | 613 | 78 |
| NC_001356.1 | Human papillomavirus - 1, complete genome | 7404 | __..ag...g......... | 7388 | 73 |
| NC_008298.1 | Rousettus aegyptiacus papillomavirus type 1, complete genome | 4122 | _...a.t.........a._ | 4106 | 73 |
| NC_008298.1 | Rousettus aegyptiacus papillomavirus type 1, complete genome | 1183 | _________.......... | 1174 | 52 |
| NC_014955.1 | Human papillomavirus type 132, complete genome | 6457 | _..gg...........___ | 6443 | 68 |
| NC_001458.1 | Human papillomavirus type 63, complete genome | 7058 | _..gg...........___ | 7044 | 68 |
| NC_003973.1 | Psittacus erithacus timneh papillomavirus, complete genome | 2407 | _.t..........._____ | 2395 | 63 |
| NC_003748.1 | Equus caballus papillomavirus - 1, complete genome | 1433 | ___..........._____ | 1423 | 57 |
| NC_004194.1 | Equinus papillomavirus, complete genome | 1409 | ___..........._____ | 1399 | 57 |
| NC_001690.1 | Human papillomavirus type 48, complete genome | 1288 | ___.........a.c.c.. | 1273 | 68 |
| NC_001690.1 | Human papillomavirus type 48, complete genome | 6834 | _____.........c.a._ | 6822 | 57 |
| NC_008032.1 | Capra hircus papillomavirus type 1, complete genome | 2358 | .g..ga..........___ | 2373 | 68 |
| NC_008297.1 | Canine papillomavirus 3, complete genome | 5296 | __.t.g.........g.._ | 5311 | 68 |
| NC_014326.1 | Mus musculus papillomavirus type 1, complete genome | 6508 | ___.a...gg......... | 6493 | 68 |
| NC_002232.1 | Rabbit oral papillomavirus, complete genome | 5682 | .........aa..._____ | 5669 | 63 |
| NC_008519.1 | Mastomys coucha papillomavirus 2, complete genome | 6447 | _____.g.g.......... | 6434 | 63 |
| NC_014143.1 | Bettongia penicillata papillomavirus 1, complete genome | 4481 | ____..gc.........._ | 4494 | 63 |
| NC_001352.1 | Human papillomavirus - 2, complete genome | 7565 | .........g.._______ | 7554 | 57 |
| NC_001352.1 | Human papillomavirus - 2, complete genome | 618 | _________.......... | 627 | 52 |
| NC_001357.1 | Human papillomavirus - 18, complete genome | 2742 | __..a........._____ | 2753 | 57 |
| NC_001619.1 | Canine oral papillomavirus, complete genome | 2469 | _..g.........______ | 2480 | 57 |
| NC_009752.1 | Bovine papillomavirus 8, complete genome | 1861 | ____..t.........___ | 1850 | 57 |
| NC_011531.1 | Chelonia mydas papillomavirus 1, complete genome | 3436 | ..c........._______ | 3425 | 57 |
| NC_014835.1 | Human papillomavirus type 148, complete genome | 861 | __..........a._____ | 850 | 57 |
| NC_014835.1 | Human papillomavirus type 148, complete genome | 5070 | _..........________ | 5079 | 52 |
| NC_008184.1 | Tursiops truncatus papillomavirus 2, complete genome | 3568 | _______.........a.. | 3579 | 57 |
| NC_007612.1 | Bovine papillomavirus 7, complete genome | 6706 | __.........g.._____ | 6717 | 57 |
| NC_001541.1 | Cottontail rabbit papillomavirus, complete genome | 3028 | __.........._______ | 3037 | 52 |
| NC_001693.1 | Human papillomavirus type 60, complete genome | 838 | __.........._______ | 847 | 52 |
| NC_013237.1 | Canine papillomavirus 6, complete genome | 2377 | ____.........._____ | 2386 | 52 |
| NC_011051.1 | Capreolus capreolus papillomavirus 1, complete genome | 7527 | _________.......... | 7518 | 52 |
| NC_014954.1 | Human papillomavirus type 131, complete genome | 770 | ___..........______ | 779 | 52 |
| NC_001583.1 | Human papillomavirus type 26, complete genome | 657 | _________.......... | 666 | 52 |
| NC_015268.1 | Camelus dromedarius papillomavirus type 2, complete genome | 4897 | _.........ct..a.___ | 4911 | 63 |
| NC_005134.2 | Human papillomavirus type 96, complete genome | 1190 | _.........c.g._____ | 1178 | 57 |
| NC_008189.1 | Human papillomavirus type 101, complete genome | 2116 | ______.g.c......... | 2128 | 57 |
| NC_014469.1 | Gammapapillomavirus HPV127, complete genome | 927 | _.........t.g._____ | 915 | 57 |