../../tmp/servers/virsirnadb/1099645912
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi12612cactatgcaaatcagcta19
AF177911.1 Coxsackievirus A16 polyprotein gene, complete cds 6176..................619394
AY790926.1 Human coxsackievirus A16 strain shzh00-1, complete genome 6176..................619394
EU262658.1 Human coxsackievirus A16 strain shzh05-1, complete genome 6176..................619394
FJ198212.1 Human coxsackievirus A16 strain GZ08, complete genome 6176..................619394
U22522.1ETU22522 Human enterovirus 71 polyprotein gene, complete cds 6177................._619389
AY421761.1 Human coxsackievirus A3 strain Olson, complete genome 6161................._617789
AY421764.1 Human coxsackievirus A6 strain Gdula, complete genome 6200................._621689
AB575923.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 2026120................._613689
AB575927.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1136113................._612989
AB575928.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1156114................._613089
GQ279371.1 Human coxsackievirus A16 strain SZ/HK08-7, complete genome 6176...........c......619389
HQ269389.1 Human coxsackievirus A16 isolate XM-CA16-3560, complete genome 6177...........c......619489
U22521.1ETU22521 Human enterovirus 71 polyprotein gene, complete cds 6174.....c..........._619084
AY421768.1 Human coxsackievirus A12 strain Texas-12, complete genome 6170..t.............._618684
AB204852.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR6174.....c..........._619084
AB204853.1 Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts6174.....c..........._619084
DQ341354.1 Human enterovirus 71 isolate 3799-SIN-98, complete genome 6178...............t._619484
DQ341367.1 Human enterovirus 71 isolate MY821-3-SAR-97, complete genome 6177...............t._619384
DQ341368.1 Human enterovirus 71 isolate MY104-9-SAR-97, complete genome 6177...............t._619384
AM396586.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/6177...............t._619384
AM396588.1 Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/6168...............t._618484
EU364841.1 Human enterovirus 71 strain 26M/AUS/4/99, complete genome 6178...............t._619484
EU376004.1 Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome 6178...............t._619484
EU376005.1 Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome 6178...............t._619484
EU812514.1 Human coxsackievirus A16 strain FY18 from China, complete genome 6182...............t._619884
AB469182.1 Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E6176...............t._619284
AB469183.1 Human enterovirus 71 gene for polyprotein, complete cds, strain: EV716911...............t._692784
GU434678.1 Human enterovirus 71 strain EV71-Hubei-09-China, complete genome 6174.....c..........._619084
AB550334.1 Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o6176...............t._619284
AB550335.1 Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L6176...............t._619284
AB575916.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1616114..............a.._613084
GQ994989.1 Human enterovirus 71 strain Chongqing1-09-China, complete genome 6174..t............t..619184
GQ279368.1 Human coxsackievirus A16 strain SZ/HK08-3, complete genome 6176...........c...t..619384
HQ423141.1 Human coxsackievirus A16 strain KMM/08, complete genome 6176...........c...t..619384
AY421762.1 Human coxsackievirus A4 strain High Point, complete genome 6202..............____621573
AY421762.1 Human coxsackievirus A4 strain High Point, complete genome 6098__.........a....._608473
AY421763.1 Human coxsackievirus A5 strain Swartz, complete genome 6166..t...........a.._618278
EF667344.1 Human enterovirus 92 strain RJG7, complete genome 6127.....ct.........._614378
AB482183.1 Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya 6178...........c..a.._619478
HQ189392.1 Human enterovirus 71 isolate HUN/1978, complete genome 6178...........c..a.._619478
AB575913.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1196103...........c..a.._611978
AB575914.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1706112...........c..a.._612878
AB575915.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 9446123...........c..a.._613978
AB575917.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 1016129...........c..a.._614578
AB575918.1 Human enterovirus 71 gene for polyprotein, complete cds, isolate: 2056114...........c..a.._613078
AY302552.1 Human echovirus 29 strain JV-10 complete genome 2584...........c.c..c.260178
AY302552.1 Human echovirus 29 strain JV-10 complete genome 2049_...........______205957
DQ133458.1 Human enterovirus 71 strain 984 polyprotein gene, complete cds 6173..t...........at..619078
DQ133459.1 Human enterovirus 71 strain 1235 polyprotein gene, complete cds 6173..t...........at..619078
EF373576.1 Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet6173..t...........at..619078
FJ194964.1 Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome 6173..t...........at..619078
GQ994991.1 Human enterovirus 71 strain Chongqing3-09-China, complete genome 6173..t...........at..619078
HQ325852.1 Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome 6174..t...........at..619178
HQ891929.1 Human enterovirus 71 strain Shanghai 118-2009, complete genome 6174..t...........at..619178
HQ456305.1 Human enterovirus A strain GZ2010-156, complete genome 6173..t...........at..619078
HQ456306.1 Human enterovirus A strain GZ2010-134, complete genome 6173..t...........at..619078
HQ456313.1 Human enterovirus A strain GZ2010-95, complete genome 6173..t...........at..619078
AY465356.1 Human enterovirus 71 strain SHZH03, complete genome 6070_.........ga....._605573
AY465356.1 Human enterovirus 71 strain SHZH03, complete genome 6173..t...........____618668
HM031191.1 Human echovirus 25 strain HN-2, complete genome 2586_..........c...___259968
AF302996.1 Enterovirus 71 strain SHZH98 polyprotein gene, complete cds 6174..t...........____618768
AY421769.1 Human coxsackievirus A14 strain G-14, complete genome 6183...........c..____619668
EU131776.1 Human enterovirus 71 strain N3340-TW-02, complete genome 6173..t...........____618668
AB550338.1 Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat6172..t...........____618568
AB550339.1 Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat6172..t...........____618568
HQ188292.1 Human enterovirus 71 strain Fuyang-0805a, complete genome 6176..t...........____618968
AM084223.1 Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,6223.........gga....._623973
AM084224.1 Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,6223.........gga....._623973
EF456706.1 Human poliovirus 1 isolate 7/b/97 nonfunctional polyprotein gene, com6177.........gg...a.._619373
AM884184.1 Human poliovirus 2, complete genome, genomic RNA, isolate VDPV MAD0056223.........gga....._623973
AM884185.1 Human poliovirus 2, complete genome, genomic RNA, isolate VDPV MAD0066223.........gga....._623973
AY302553.1 Human echovirus 3 strain Morrisey complete genome 2677..ac..a.........._269373
AY697458.1 Human enterovirus 76 polyprotein gene, complete cds 6193.........g.c..a.._620973
AY697461.1 Human enterovirus 91 polyprotein gene, complete cds 1407_.........c...a.c.142373
X67706.1 Coxsackievirus B5 complete genome 2585.........g.c...___259968
X84981.1 Echovirus 9 (strain Hill), complete genome 2584...........cg..___259868
S76772.1 polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive2586...........ca..___260068
X92886.1 Echovirus 9 (strain Barty), complete genome 2585...........ct..___259968
AF311939.1 Human coxsackievirus B4 strain E2 variant, complete genome 2586...........ca..___260068
AF524866.1 Human echovirus 9 strain Barty, complete genome 2587...........ct..___260168
AF524867.1 Human echovirus 9 isolate DM, complete genome 2587...........ct..___260168
AY875692.1 Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome 3284_..........c..____329663
V01148.1 Genome of human poliovirus type 1 (Mahoney strain). (One of two versi7052_______...........706257
V01150.1 Human poliovirus strain Sabin 1 complete genome, strain Sabin 1 7060_______...........707057
AJ132960.1 Human poliovirus 1, complete genome. Isolated from faeces of immunode7061_______...........707157
AJ416942.1 Human poliovirus 1 genomic RNA for polyprotein, strain CHAT 10A-11 7060_______...........707057
AF462418.1 Human poliovirus 1 99/056-252-14, complete genome 7060_______...........707057
AF462419.1 Human poliovirus 1 RUS-1161-96-001, complete genome 7060_______...........707057
AJ430385.1 Human poliovirus 1 genomic RNA for polyprotein gene, strain Cox 7060_______...........707057
AY184219.1 Human poliovirus 1 strain Sabin 1, complete genome 7060_______...........707057
AY278550.1 Human poliovirus 2 isolate P2S/Mog65-1 (20003), complete genome 7059_______...........706957
AY278552.1 Human poliovirus 2 isolate P2S/Mog65-2 (20077), complete genome 7059_______...........706957
AF538840.1 Human poliovirus 1 isolate TCDCE01-135, complete genome 7030_______...........704057
AF538841.1 Human poliovirus 1 isolate TCDC01-113, complete genome 7060_______...........707057
AF111961.2 Human poliovirus 1 isolate CHN-Guangdong/92-2, complete genome 7064_______...........707457
AJ544513.1 Human poliovirus 2 gene for polyprotein, genomic RNA, isolate 102050 7059_______...........706957
AY876912.1 Human enterovirus Ningbo3-02, complete genome 7078_______...........708857
AM040036.1 Human poliovirus 2 complete virion genome, isolate PV2/5021-1/ISR99 6963_______...........697357
EF682343.1 Human poliovirus 1 strain USA10774 polyprotein gene, complete cds 7034_______...........704457
EF682344.1 Human poliovirus 1 strain USA10775 polyprotein gene, complete cds 7034_______...........704457
EF682345.1 Human poliovirus 1 strain USA10773 polyprotein gene, complete cds 7034_______...........704457
EF682346.1 Human poliovirus 1 strain USA10780 polyprotein gene, complete cds 7034_______...........704457
EF682347.1 Human poliovirus 1 strain USA10781 polyprotein gene, complete cds 7034_______...........704457
EF682348.1 Human poliovirus 1 strain USA10782 polyprotein gene, complete cds 7034_______...........704457
EF682349.1 Human poliovirus 1 strain USA10771 polyprotein gene, complete cds 7034_______...........704457
EF682350.1 Human poliovirus 1 strain USA10772 polyprotein gene, complete cds 7034_______...........704457
EF682351.1 Human poliovirus 1 strain USA10778 polyprotein gene, complete cds 7034_______...........704457
EF682352.1 Human poliovirus 1 strain USA10770 polyprotein gene, complete cds 7034_______...........704457
EF682353.1 Human poliovirus 1 strain USA10777 polyprotein gene, complete cds 7034_______...........704457
EF682354.1 Human poliovirus 1 strain USA10779 polyprotein gene, complete cds 7034_______...........704457
EF682356.1 Human poliovirus 1 strain USA10784, complete genome 7060_______...........707057
EF682357.1 Human poliovirus 1 strain USA10785, complete genome 7060_______...........707057
EF682358.1 Human poliovirus 1 strain USA10783, complete genome 7060_______...........707057
EU794953.1 Human poliovirus 1 isolate A21 polyprotein gene, complete cds 7012_______...........702257
EU794954.1 Human poliovirus 1 isolate A49 polyprotein gene, complete cds 7012_______...........702257
EU794955.1 Human poliovirus 1 isolate A63 polyprotein gene, complete cds 7012_______...........702257
EU794956.1 Human poliovirus 1 isolate A84 polyprotein gene, complete cds 7012_______...........702257
EU794957.1 Human poliovirus 1 isolate A88 polyprotein gene, complete cds 7012_______...........702257
EU794958.1 Human poliovirus 1 isolate A91 polyprotein gene, complete cds 7012_______...........702257
EU794959.1 Human poliovirus 1 isolate A102 polyprotein gene, complete cds 7012_______...........702257
EU794960.1 Human poliovirus 1 isolate A105 polyprotein gene, complete cds 7012_______...........702257
EU794961.1 Human poliovirus 1 isolate A118 polyprotein gene, complete cds 7012_______...........702257
EU794962.1 Human poliovirus 1 isolate A199 polyprotein gene, complete cds 7012_______...........702257
EU794963.1 Human poliovirus 1 isolate A449 polyprotein gene, complete cds 7012_______...........702257
EU794964.1 Human poliovirus 1 isolate A649 polyprotein gene, complete cds 7012_______...........702257
FJ769378.1 Human poliovirus 1 strain CHN8184/GZ/CHN/2004, complete genome 7060_______...........707057
FJ769379.1 Human poliovirus 1 strain CHN8229-1/GZ/CHN/2004, complete genome 7060_______...........707057
FJ769380.1 Human poliovirus 1 strain CHN8229-2/GZ/CHN/2004, complete genome 7060_______...........707057
FJ769381.1 Human poliovirus 1 strain CHN8229-3/GZ/CHN/2004, complete genome 7060_______...........707057
FJ769382.1 Human poliovirus 1 strain CHN8233c/GZ/CHN/2004, complete genome 7060_______...........707057
FJ769383.1 Human poliovirus 1 strain CHN8225c/GZ/CHN/2004, complete genome 7060_______...........707057
FJ769384.1 Human poliovirus 1 strain CHN8248c/GZ/CHN/2004, complete genome 7060_______...........707057
FJ769385.1 Human poliovirus 1 strain CHN8264c/GZ/CHN/2004, complete genome 7060_______...........707057
AY302546.1 Human echovirus 20 strain JV-1 complete genome 2908_______...........291857