../../tmp/servers/virsirnadb/1236517585
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1277 | 1 | gcactgcaactttggtcta | 19 | |
| AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 1577 | _.................. | 1594 | 94 |
| AY790926.1 | Human coxsackievirus A16 strain shzh00-1, complete genome | 1577 | _.................. | 1594 | 94 |
| EU262658.1 | Human coxsackievirus A16 strain shzh05-1, complete genome | 1577 | _.................. | 1594 | 94 |
| GQ279371.1 | Human coxsackievirus A16 strain SZ/HK08-7, complete genome | 1577 | _.................. | 1594 | 94 |
| HQ269389.1 | Human coxsackievirus A16 isolate XM-CA16-3560, complete genome | 1578 | _.................. | 1595 | 94 |
| DQ341358.1 | Human enterovirus 71 isolate S40221-SAR-00, complete genome | 1576 | _..t............... | 1593 | 89 |
| DQ341360.1 | Human enterovirus 71 isolate J115-MAL-01, complete genome | 1575 | _..t............... | 1592 | 89 |
| DQ341361.1 | Human enterovirus 71 isolate 1M-AUS-12-00, complete genome | 1576 | _..t............... | 1593 | 89 |
| DQ452074.1 | Human enterovirus 71 strain 804/NO/03, complete genome | 1577 | _..t............... | 1594 | 89 |
| FJ194965.1 | Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome | 1574 | _..t............... | 1591 | 89 |
| FJ606447.1 | Human enterovirus 71 strain BJ08-Z004-3, complete genome | 1574 | _..............c... | 1591 | 89 |
| GQ892830.1 | Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome | 1574 | _..t............... | 1591 | 89 |
| HM053671.1 | Human enterovirus 71 strain BJ462, complete genome | 1574 | _..............c... | 1591 | 89 |
| AB550340.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org | 1576 | _..t............... | 1593 | 89 |
| AB550341.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS | 1576 | _..t............... | 1593 | 89 |
| AB575937.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 141 | 1488 | _..t............... | 1505 | 89 |
| AB575938.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100 | 1549 | _..t............... | 1566 | 89 |
| AB550338.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 1573 | _..............c.._ | 1589 | 84 |
| AB550339.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 1573 | _..............c.._ | 1589 | 84 |
| DQ341367.1 | Human enterovirus 71 isolate MY821-3-SAR-97, complete genome | 1578 | _..t...........g... | 1595 | 84 |
| EU414334.1 | Human enterovirus 71 strain PLday4-CH-06, complete genome | 1575 | _..t............t.. | 1592 | 84 |
| EU414335.1 | Human enterovirus 71 strain PLday1-CH-06, complete genome | 1575 | _..t............t.. | 1592 | 84 |
| EU864507.1 | Human enterovirus 71 isolate EV71/Zhejiang08, complete genome | 1575 | _..t...........c... | 1592 | 84 |
| FJ198212.1 | Human coxsackievirus A16 strain GZ08, complete genome | 1577 | _..t.....t......... | 1594 | 84 |
| FJ360545.1 | Human enterovirus 71 isolate GZ-08-02, complete genome | 1574 | _..t...........c... | 1591 | 84 |
| FJ606450.1 | Human enterovirus 71 strain BJ08-Z025-5, complete genome | 1574 | _..t...........c... | 1591 | 84 |
| FJ713137.1 | Human enterovirus 71 strain Shanghai 036-2009, complete genome | 1576 | _..t.....t......... | 1593 | 84 |
| FJ607336.1 | Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete | 1572 | _..t...........c... | 1589 | 84 |
| FJ607337.1 | Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co | 1573 | _..t...........c... | 1590 | 84 |
| FJ607338.1 | Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c | 1573 | _..t...........c... | 1590 | 84 |
| GQ994990.1 | Human enterovirus 71 strain Chongqing2-09-China, complete genome | 1574 | _..t...........c... | 1591 | 84 |
| GQ994991.1 | Human enterovirus 71 strain Chongqing3-09-China, complete genome | 1574 | _..t...........c... | 1591 | 84 |
| GU366191.1 | Human enterovirus 71 strain Henan10-08-China, complete genome | 1574 | _..t...........c... | 1591 | 84 |
| GU396280.1 | Human enterovirus 71 isolate EV71/Lanzhou01, complete genome | 1574 | _..t...........c... | 1591 | 84 |
| HM002484.1 | Human enterovirus 71 strain BJ67, complete genome | 1574 | _..t...........c... | 1591 | 84 |
| HM002485.1 | Human enterovirus 71 strain BJ97, complete genome | 1574 | _..t...........c... | 1591 | 84 |
| HM002486.1 | Human enterovirus 71 strain BJ110, complete genome | 1575 | _..t.....t......... | 1592 | 84 |
| HM002487.1 | Human enterovirus 71 strain BJ303, complete genome | 1575 | _..t.....t......... | 1592 | 84 |
| HM002488.1 | Human enterovirus 71 strain BJ366, complete genome | 1574 | _..t...........c... | 1591 | 84 |
| HM053669.1 | Human enterovirus 71 strain BJ293, complete genome | 1574 | _..t...........c... | 1591 | 84 |
| HM053670.1 | Human enterovirus 71 strain BJ393, complete genome | 1574 | _..t...........c... | 1591 | 84 |
| AB575936.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 961 | 1515 | _..t...........c... | 1532 | 84 |
| HQ891924.1 | Human enterovirus 71 strain Shanghai 28-2009, complete genome | 1575 | _..t...........c... | 1592 | 84 |
| HQ456309.1 | Human enterovirus A strain GZ08-831, complete genome | 1574 | _..t...........c... | 1591 | 84 |
| HQ456310.1 | Human enterovirus A strain GZ08-530, complete genome | 1574 | _..t...........c... | 1591 | 84 |
| HQ456310.1 | Human enterovirus A strain GZ08-530, complete genome | 3976 | _.........c....____ | 3989 | 68 |
| HQ456311.1 | Human enterovirus A strain GZ08-522, complete genome | 1574 | _..t...........c... | 1591 | 84 |
| AF119795.2 | Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds | 1575 | _..t..t..........._ | 1591 | 78 |
| AF136379.1 | Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds | 1577 | _..t..t..........._ | 1593 | 78 |
| AF119796.3 | Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds | 1575 | _..t..t..........._ | 1591 | 78 |
| AF176044.1 | Enterovirus 71 polyprotein gene, complete cds | 1578 | _..t..t..........._ | 1594 | 78 |
| AF304457.1 | Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds | 1577 | _..t..t..........._ | 1593 | 78 |
| AF304458.1 | Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds | 1577 | _..t..t..........._ | 1593 | 78 |
| AF304459.1 | Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds | 1577 | _..t..t..........._ | 1593 | 78 |
| AF316321.2 | Enterovirus 5865/sin/000009, complete genome | 1578 | _..t...........g.._ | 1594 | 78 |
| AF352027.1 | Enterovirus 5666/sin/002209, complete genome | 1578 | _..t...........g.._ | 1594 | 78 |
| AY697460.1 | Human enterovirus 90 polyprotein gene, complete cds | 1584 | _............tc..._ | 1600 | 78 |
| DQ060149.1 | Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome | 1577 | _..t..t..........._ | 1593 | 78 |
| DQ341357.1 | Human enterovirus 71 isolate 7F-AUS-6-99, complete genome | 1576 | _..t...........c.._ | 1592 | 78 |
| DQ341365.1 | Human enterovirus 71 isolate PP37-MAL-01, complete genome | 1578 | _..t...........g.._ | 1594 | 78 |
| DQ341366.1 | Human enterovirus 71 isolate SB2864-SAR-00, complete genome | 1578 | _..t...........g.._ | 1594 | 78 |
| DQ381846.1 | Human enterovirus 71 strain 6F/AUS/6/99, complete genome | 1576 | _..t..t..........._ | 1592 | 78 |
| AM396584.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 1575 | _..t..t..........._ | 1591 | 78 |
| AM396585.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 1575 | _..t..t..........._ | 1591 | 78 |
| EF063152.1 | Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd | 1576 | _..t...........c.._ | 1592 | 78 |
| EU703812.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete | 1574 | _..t...........c.._ | 1590 | 78 |
| EU703814.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete | 1574 | _..t...........c.._ | 1590 | 78 |
| EU812515.1 | Human enterovirus 71 strain FY23 from China, complete genome | 1577 | _..t...........c.._ | 1593 | 78 |
| FJ158600.1 | Human enterovirus 71 isolate DTID/ZJU-62, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| FJ158601.1 | Human enterovirus 71 isolate DTID/ZJU-74, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| FJ360546.1 | Human enterovirus 71 isolate GZ-08-03, complete genome | 1573 | _..t...........c.._ | 1589 | 78 |
| FJ439769.1 | Human enterovirus 71 strain Fuyang-0805, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| FJ606448.1 | Human enterovirus 71 strain BJ08-Z011-4, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| FJ606449.1 | Human enterovirus 71 strain BJ08-Z020-1, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| FJ828519.1 | Human enterovirus 71 isolate BJ08, complete genome | 1553 | _..t...........c.._ | 1569 | 78 |
| FJ607334.1 | Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g | 1573 | _..t...........c.._ | 1589 | 78 |
| FJ607335.1 | Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g | 1573 | _..t...........c.._ | 1589 | 78 |
| GQ994988.1 | Human enterovirus 71 strain Anhui1-09-China, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| GU459070.1 | Human enterovirus 71 isolate FY23-K12, complete genome | 1577 | _..t...........c.._ | 1593 | 78 |
| GU459071.1 | Human enterovirus 71 isolate FY23-K14, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| HM003207.1 | Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| GQ279370.1 | Human enterovirus 71 strain SZ/HK08-6, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| HM002489.1 | Human enterovirus 71 strain BJ398, complete genome | 1575 | _..t...........c.._ | 1591 | 78 |
| HQ189392.1 | Human enterovirus 71 isolate HUN/1978, complete genome | 1579 | _..t...........g.._ | 1595 | 78 |
| HQ407557.1 | Human enterovirus 71 strain LN009, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| AB550332.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org | 1576 | _..t..t..........._ | 1592 | 78 |
| AB550333.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 | 1576 | _..t..t..........._ | 1592 | 78 |
| HQ426649.1 | Human enterovirus 71 strain 2010FJLY008, complete genome | 1572 | _..t...........c.._ | 1588 | 78 |
| HQ325852.1 | Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome | 1575 | _..t...........c.._ | 1591 | 78 |
| HQ891923.1 | Human enterovirus 71 strain Shanghai 27-2009, complete genome | 1575 | _..t...........c.._ | 1591 | 78 |
| HQ891925.1 | Human enterovirus 71 strain Shanghai 36-2009, complete genome | 1576 | _..t...........c.._ | 1592 | 78 |
| HQ891926.1 | Human enterovirus 71 strain Shanghai 51-2009, complete genome | 1576 | _..t...........c.._ | 1592 | 78 |
| HQ891927.1 | Human enterovirus 71 strain Shanghai 64-2009, complete genome | 1575 | _..t...........c.._ | 1591 | 78 |
| HQ891928.1 | Human enterovirus 71 strain Shanghai 117-2009, complete genome | 1575 | _..t...........c.._ | 1591 | 78 |
| HQ891929.1 | Human enterovirus 71 strain Shanghai 118-2009, complete genome | 1575 | _..t...........c.._ | 1591 | 78 |
| HQ456306.1 | Human enterovirus A strain GZ2010-134, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| HQ456307.1 | Human enterovirus A strain GZ2010-120, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| HQ456308.1 | Human enterovirus A strain GZ2010-118, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| HQ456313.1 | Human enterovirus A strain GZ2010-95, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| HQ611148.1 | Human enterovirus 71 strain AH08/06, complete genome | 1574 | _..t...........c.._ | 1590 | 78 |
| JN001860.1 | Human enterovirus 71 strain NB/2010/01, complete genome | 1575 | _..t...........c.._ | 1591 | 78 |
| EF667343.1 | Simian enterovirus 46 strain RNM5, complete genome | 1565 | _..t...........at.. | 1582 | 78 |
| EU812514.1 | Human coxsackievirus A16 strain FY18 from China, complete genome | 1583 | _..t...........ct.. | 1600 | 78 |
| FJ360544.1 | Human enterovirus 71 isolate GZ-08-01, complete genome | 1573 | _..t...........ct.. | 1590 | 78 |
| HQ456312.1 | Human enterovirus A strain GZ08-520, complete genome | 1574 | _..t...........ct.. | 1591 | 78 |
| AY421763.1 | Human coxsackievirus A5 strain Swartz, complete genome | 3969 | _...a..........c.__ | 3984 | 73 |
| AY697458.1 | Human enterovirus 76 polyprotein gene, complete cds | 2202 | ___...gg........... | 2217 | 73 |
| EF667344.1 | Human enterovirus 92 strain RJG7, complete genome | 2136 | ___...gg........... | 2151 | 73 |
| AB482183.1 | Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya | 1579 | _..t...........____ | 1592 | 68 |
| AB575915.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 944 | 1524 | _..t...........____ | 1537 | 68 |
| AB575916.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 161 | 1515 | _..t...........____ | 1528 | 68 |
| AB575918.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 205 | 1515 | _..t...........____ | 1528 | 68 |
| AF111953.2 | Human poliovirus 1 isolate CHN-Hebei/91-2, complete genome | 1568 | ____............___ | 1579 | 63 |
| AF111961.2 | Human poliovirus 1 isolate CHN-Guangdong/92-2, complete genome | 1568 | ____............___ | 1579 | 63 |
| AF111966.2 | Human poliovirus 1 isolate CHN-Hainan/93-2, complete genome | 1568 | ____............___ | 1579 | 63 |
| AF111982.2 | Human poliovirus 1 isolate CHN-Yunnan/92, complete genome | 1568 | ____............___ | 1579 | 63 |
| AF111983.3 | Human poliovirus 1 isolate CHN-Henan/91-3, complete genome | 1568 | ____............___ | 1579 | 63 |
| AF111984.2 | Human poliovirus 1 isolate CHN-Jiangxi/89-1, complete genome | 1567 | ____............___ | 1578 | 63 |
| AY773285.1 | Human enterovirus 90 isolate F950027, complete genome | 1583 | _............______ | 1594 | 63 |
| AB192877.1 | Human enterovirus 90 genomic RNA, complete genome | 1584 | _............______ | 1595 | 63 |
| EF555645.1 | Human enterovirus 102, complete genome | 5542 | _.........g..._____ | 5530 | 63 |
| AY302541.1 | Human echovirus 15 strain CH 96-51 complete genome | 3014 | .t...........______ | 3026 | 63 |
| AY302554.1 | Human echovirus 31 strain Caldwell complete genome | 285 | ..t..........______ | 273 | 63 |
| X67706.1 | Coxsackievirus B5 complete genome | 1352 | ____...........____ | 1362 | 57 |