../../tmp/servers/virsirnadb/2000797316
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi14361gcagctgccaaatgtcaaa19
NC_004281.1 Mammalian orthoreovirus 3 segment M3, complete sequence 1855...................1873100
NC_004281.1 Mammalian orthoreovirus 3 segment M3, complete sequence 694_.t.g........._____68257
NC_004281.1 Mammalian orthoreovirus 3 segment M3, complete sequence 1159__________.........116747
AF174384.1 Reovirus 3 major nonstructural protein mu-NS gene, complete cds 1861...................1879100
AF174384.1 Reovirus 3 major nonstructural protein mu-NS gene, complete cds 697_.t.g........._____68557
AF174384.1 Reovirus 3 major nonstructural protein mu-NS gene, complete cds 1162__________.........117047
EF494440.1 Mammalian orthoreovirus 3 strain T3D segment M3, complete sequence 1861...................1879100
EF494440.1 Mammalian orthoreovirus 3 strain T3D segment M3, complete sequence 697_.t.g........._____68557
EF494440.1 Mammalian orthoreovirus 3 strain T3D segment M3, complete sequence 1162__________.........117047
GU589582.1 Mammalian orthoreovirus 3 strain Abney segment M3, complete sequence 1861...................1879100
GU589582.1 Mammalian orthoreovirus 3 strain Abney segment M3, complete sequence 697_.t.g........._____68557
HM159618.1 Mammalian orthoreovirus 3 Dearing strain T3D segment M3, complete seq1861...................1879100
HM159618.1 Mammalian orthoreovirus 3 Dearing strain T3D segment M3, complete seq697_.t.g........._____68557
HM159618.1 Mammalian orthoreovirus 3 Dearing strain T3D segment M3, complete seq1162__________.........117047
GU991664.1 Mammalian orthoreovirus 3 isolate R124 segment M3, complete sequence 1861...................1879100
GU991664.1 Mammalian orthoreovirus 3 isolate R124 segment M3, complete sequence 697_.t.g........._____68557
GU991664.1 Mammalian orthoreovirus 3 isolate R124 segment M3, complete sequence 1162__________.........117047
GU991674.1 Mammalian orthoreovirus 3 isolate Q2R segment M3, complete sequence 1861...................1879100
GU991674.1 Mammalian orthoreovirus 3 isolate Q2R segment M3, complete sequence 697_.t.g........._____68557
GU991674.1 Mammalian orthoreovirus 3 isolate Q2R segment M3, complete sequence 1162__________.........117047
NC_004281.1 Mammalian orthoreovirus 3 segment M3, complete sequence 1855...................1873100
NC_004281.1 Mammalian orthoreovirus 3 segment M3, complete sequence 694_.t.g........._____68257
NC_004281.1 Mammalian orthoreovirus 3 segment M3, complete sequence 1159__________.........116747
NC_004278.1 Mammalian orthoreovirus 3 segment M2, complete sequence 694_.........g...a..__70973
NC_004278.1 Mammalian orthoreovirus 3 segment M2, complete sequence 694_.........g...a..__70973
M20161.1REO3OCPMUA Reovirus type 3 Dearing outer capsid protein (mu-1) RNA, co693_.........g...a..__70873
U24260.1RSU24260 Reovirus type 3 (M2) mRNA, complete cds 693_.........g...a..__70873
EF494439.1 Mammalian orthoreovirus 3 strain T3D segment M2, complete sequence 693_.........g...a..__70873
GU589581.1 Mammalian orthoreovirus 3 strain Abney segment M2, complete sequence 694_.........g...a..__70973
HM159617.1 Mammalian orthoreovirus 3 Dearing strain T3D segment M2, complete seq694_.........g...a..__70973
GU991663.1 Mammalian orthoreovirus 3 isolate R124 segment M2, complete sequence 693_.........g...a..__70873
GU991673.1 Mammalian orthoreovirus 3 isolate Q2R segment M2, complete sequence 693_.........g...a..__70873
DQ664189.1 Mammalian orthoreovirus 2 isolate BYD1 segment M3, complete sequence 697_.t.g........._____68557
DQ664189.1 Mammalian orthoreovirus 2 isolate BYD1 segment M3, complete sequence 1162__________.........117047
GU196312.1 Mammalian orthoreovirus 2 segment S3 nonstructural protein gene, comp320________.c.........33052
HQ642777.1 Mammalian orthoreovirus strain MRV-HLJ/2007 sigma-NS protein gene, co295________.c.........30552
AY428874.1 Mammalian orthoreovirus 2 strain SV59 minor core protein mu2 gene, co1595________.........g.158552
AY428874.1 Mammalian orthoreovirus 2 strain SV59 minor core protein mu2 gene, co587_____........._____57947
NC_013226.1 Mammalian orthoreovirus 3 segment L2, complete genome 2068_........._________207647
NC_013229.1 Mammalian orthoreovirus 3 segment L3, complete genome 1239______.........____124747
NC_013232.1 Mammalian orthoreovirus 3 segment S2, complete genome 135_........._________12747
NC_013233.1 Mammalian orthoreovirus 3 segment S3, complete genome 1084_........._________107647
NC_004279.1 Mammalian orthoreovirus 3 segment S2, complete sequence 916_........._________92447
DQ411553.1 Mammalian orthoreovirus strain SC-A segment S3 sigma-NS protein gene,1084_........._________107647
NC_004279.1 Mammalian orthoreovirus 3 segment S2, complete sequence 916_........._________92447
L19774.1REO1MCPS2A Mammalian orthoreovirus 1 major core protein sigma 2 (S2) g135_........._________12747
L19776.1REO3MCPS2A Mammalian orthoreovirus 3 major core protein sigma 2 (S2) g916_........._________92447
J02327.1REOS2 Reovirus serotype 3 S2 gene 916_........._________92447
DQ664190.1 Mammalian orthoreovirus 2 isolate BYD1 segment S2, complete sequence 135_........._________12747
EF494442.1 Mammalian orthoreovirus 3 strain T3D segment S2, complete sequence 916_........._________92447
GU196311.1 Mammalian orthoreovirus 2 segment S2 sigma 2 protein gene, complete c134_........._________12647
GU589584.1 Mammalian orthoreovirus 3 strain Abney segment S2, complete sequence 135_........._________12747
HM159620.1 Mammalian orthoreovirus 3 Dearing strain T3D segment S2, complete seq916_........._________92447
HQ642776.1 Mammalian orthoreovirus strain MRV-HLJ/2007 sigma-2 protein gene, com117_........._________10947
GU991666.1 Mammalian orthoreovirus 3 isolate R124 segment S2, complete sequence 916_........._________92447
GU991676.1 Mammalian orthoreovirus 3 isolate Q2R segment S2, complete sequence 916_........._________92447