../../tmp/servers/virsirnadb/1215204523
Result for your query siRNA sequence
RED | =100 % Complementary sequence |
. | =Identical residue |
blue alphabets | =mismatch |
_ | =Gap |
Acc number | Strain name | Start | Alignment | End | % Identity |
Query | virsi1436 | 1 | gcagctgccaaatgtcaaa | 19 | |
NC_004281.1 | Mammalian orthoreovirus 3 segment M3, complete sequence | 1855 | ................... | 1873 | 100 |
NC_004281.1 | Mammalian orthoreovirus 3 segment M3, complete sequence | 694 | _.t.g........._____ | 682 | 57 |
NC_004281.1 | Mammalian orthoreovirus 3 segment M3, complete sequence | 1159 | __________......... | 1167 | 47 |
AF174384.1 | Reovirus 3 major nonstructural protein mu-NS gene, complete cds | 1861 | ................... | 1879 | 100 |
AF174384.1 | Reovirus 3 major nonstructural protein mu-NS gene, complete cds | 697 | _.t.g........._____ | 685 | 57 |
AF174384.1 | Reovirus 3 major nonstructural protein mu-NS gene, complete cds | 1162 | __________......... | 1170 | 47 |
EF494440.1 | Mammalian orthoreovirus 3 strain T3D segment M3, complete sequence | 1861 | ................... | 1879 | 100 |
EF494440.1 | Mammalian orthoreovirus 3 strain T3D segment M3, complete sequence | 697 | _.t.g........._____ | 685 | 57 |
EF494440.1 | Mammalian orthoreovirus 3 strain T3D segment M3, complete sequence | 1162 | __________......... | 1170 | 47 |
GU589582.1 | Mammalian orthoreovirus 3 strain Abney segment M3, complete sequence | 1861 | ................... | 1879 | 100 |
GU589582.1 | Mammalian orthoreovirus 3 strain Abney segment M3, complete sequence | 697 | _.t.g........._____ | 685 | 57 |
HM159618.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment M3, complete seq | 1861 | ................... | 1879 | 100 |
HM159618.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment M3, complete seq | 697 | _.t.g........._____ | 685 | 57 |
HM159618.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment M3, complete seq | 1162 | __________......... | 1170 | 47 |
GU991664.1 | Mammalian orthoreovirus 3 isolate R124 segment M3, complete sequence | 1861 | ................... | 1879 | 100 |
GU991664.1 | Mammalian orthoreovirus 3 isolate R124 segment M3, complete sequence | 697 | _.t.g........._____ | 685 | 57 |
GU991664.1 | Mammalian orthoreovirus 3 isolate R124 segment M3, complete sequence | 1162 | __________......... | 1170 | 47 |
GU991674.1 | Mammalian orthoreovirus 3 isolate Q2R segment M3, complete sequence | 1861 | ................... | 1879 | 100 |
GU991674.1 | Mammalian orthoreovirus 3 isolate Q2R segment M3, complete sequence | 697 | _.t.g........._____ | 685 | 57 |
GU991674.1 | Mammalian orthoreovirus 3 isolate Q2R segment M3, complete sequence | 1162 | __________......... | 1170 | 47 |
NC_004281.1 | Mammalian orthoreovirus 3 segment M3, complete sequence | 1855 | ................... | 1873 | 100 |
NC_004281.1 | Mammalian orthoreovirus 3 segment M3, complete sequence | 694 | _.t.g........._____ | 682 | 57 |
NC_004281.1 | Mammalian orthoreovirus 3 segment M3, complete sequence | 1159 | __________......... | 1167 | 47 |
NC_004278.1 | Mammalian orthoreovirus 3 segment M2, complete sequence | 694 | _.........g...a..__ | 709 | 73 |
NC_004278.1 | Mammalian orthoreovirus 3 segment M2, complete sequence | 694 | _.........g...a..__ | 709 | 73 |
M20161.1 | REO3OCPMUA Reovirus type 3 Dearing outer capsid protein (mu-1) RNA, co | 693 | _.........g...a..__ | 708 | 73 |
U24260.1 | RSU24260 Reovirus type 3 (M2) mRNA, complete cds | 693 | _.........g...a..__ | 708 | 73 |
EF494439.1 | Mammalian orthoreovirus 3 strain T3D segment M2, complete sequence | 693 | _.........g...a..__ | 708 | 73 |
GU589581.1 | Mammalian orthoreovirus 3 strain Abney segment M2, complete sequence | 694 | _.........g...a..__ | 709 | 73 |
HM159617.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment M2, complete seq | 694 | _.........g...a..__ | 709 | 73 |
GU991663.1 | Mammalian orthoreovirus 3 isolate R124 segment M2, complete sequence | 693 | _.........g...a..__ | 708 | 73 |
GU991673.1 | Mammalian orthoreovirus 3 isolate Q2R segment M2, complete sequence | 693 | _.........g...a..__ | 708 | 73 |
DQ664189.1 | Mammalian orthoreovirus 2 isolate BYD1 segment M3, complete sequence | 697 | _.t.g........._____ | 685 | 57 |
DQ664189.1 | Mammalian orthoreovirus 2 isolate BYD1 segment M3, complete sequence | 1162 | __________......... | 1170 | 47 |
GU196312.1 | Mammalian orthoreovirus 2 segment S3 nonstructural protein gene, comp | 320 | ________.c......... | 330 | 52 |
HQ642777.1 | Mammalian orthoreovirus strain MRV-HLJ/2007 sigma-NS protein gene, co | 295 | ________.c......... | 305 | 52 |
AY428874.1 | Mammalian orthoreovirus 2 strain SV59 minor core protein mu2 gene, co | 1595 | ________.........g. | 1585 | 52 |
AY428874.1 | Mammalian orthoreovirus 2 strain SV59 minor core protein mu2 gene, co | 587 | _____........._____ | 579 | 47 |
NC_013226.1 | Mammalian orthoreovirus 3 segment L2, complete genome | 2068 | _........._________ | 2076 | 47 |
NC_013229.1 | Mammalian orthoreovirus 3 segment L3, complete genome | 1239 | ______.........____ | 1247 | 47 |
NC_013232.1 | Mammalian orthoreovirus 3 segment S2, complete genome | 135 | _........._________ | 127 | 47 |
NC_013233.1 | Mammalian orthoreovirus 3 segment S3, complete genome | 1084 | _........._________ | 1076 | 47 |
NC_004279.1 | Mammalian orthoreovirus 3 segment S2, complete sequence | 916 | _........._________ | 924 | 47 |
DQ411553.1 | Mammalian orthoreovirus strain SC-A segment S3 sigma-NS protein gene, | 1084 | _........._________ | 1076 | 47 |
NC_004279.1 | Mammalian orthoreovirus 3 segment S2, complete sequence | 916 | _........._________ | 924 | 47 |
L19774.1 | REO1MCPS2A Mammalian orthoreovirus 1 major core protein sigma 2 (S2) g | 135 | _........._________ | 127 | 47 |
L19776.1 | REO3MCPS2A Mammalian orthoreovirus 3 major core protein sigma 2 (S2) g | 916 | _........._________ | 924 | 47 |
J02327.1 | REOS2 Reovirus serotype 3 S2 gene | 916 | _........._________ | 924 | 47 |
DQ664190.1 | Mammalian orthoreovirus 2 isolate BYD1 segment S2, complete sequence | 135 | _........._________ | 127 | 47 |
EF494442.1 | Mammalian orthoreovirus 3 strain T3D segment S2, complete sequence | 916 | _........._________ | 924 | 47 |
GU196311.1 | Mammalian orthoreovirus 2 segment S2 sigma 2 protein gene, complete c | 134 | _........._________ | 126 | 47 |
GU589584.1 | Mammalian orthoreovirus 3 strain Abney segment S2, complete sequence | 135 | _........._________ | 127 | 47 |
HM159620.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment S2, complete seq | 916 | _........._________ | 924 | 47 |
HQ642776.1 | Mammalian orthoreovirus strain MRV-HLJ/2007 sigma-2 protein gene, com | 117 | _........._________ | 109 | 47 |
GU991666.1 | Mammalian orthoreovirus 3 isolate R124 segment S2, complete sequence | 916 | _........._________ | 924 | 47 |
GU991676.1 | Mammalian orthoreovirus 3 isolate Q2R segment S2, complete sequence | 916 | _........._________ | 924 | 47 |