../../tmp/servers/virsirnadb/1262417157
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1258 | 2 | ctattccacctatgtgaa | 19 | |
| AY421763.1 | Human coxsackievirus A5 strain Swartz, complete genome | 6387 | .................. | 6404 | 94 |
| AY790926.1 | Human coxsackievirus A16 strain shzh00-1, complete genome | 6397 | .................. | 6414 | 94 |
| EU262658.1 | Human coxsackievirus A16 strain shzh05-1, complete genome | 6397 | .................. | 6414 | 94 |
| FJ198212.1 | Human coxsackievirus A16 strain GZ08, complete genome | 6397 | .................. | 6414 | 94 |
| GQ279368.1 | Human coxsackievirus A16 strain SZ/HK08-3, complete genome | 6397 | .................. | 6414 | 94 |
| GQ279371.1 | Human coxsackievirus A16 strain SZ/HK08-7, complete genome | 6397 | .................. | 6414 | 94 |
| HQ269389.1 | Human coxsackievirus A16 isolate XM-CA16-3560, complete genome | 6398 | .................. | 6415 | 94 |
| DQ341366.1 | Human enterovirus 71 isolate SB2864-SAR-00, complete genome | 6399 | _................. | 6415 | 89 |
| DQ341366.1 | Human enterovirus 71 isolate SB2864-SAR-00, complete genome | 4676 | _.........a...____ | 4688 | 63 |
| AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 6397 | .........t........ | 6414 | 89 |
| AY421760.1 | Human coxsackievirus A2 strain Fleetwood, complete genome | 6385 | ...c.............. | 6402 | 89 |
| AY421760.1 | Human coxsackievirus A2 strain Fleetwood, complete genome | 4663 | _...a.........____ | 4675 | 63 |
| AY421767.1 | Human coxsackievirus A10 strain Kowalik, complete genome | 6396 | ......a........... | 6413 | 89 |
| HQ423141.1 | Human coxsackievirus A16 strain KMM/08, complete genome | 6397 | ............c..... | 6414 | 89 |
| AY421769.1 | Human coxsackievirus A14 strain G-14, complete genome | 6405 | _..............t.. | 6421 | 84 |
| EF373575.1 | Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet | 6401 | _..c.............. | 6417 | 84 |
| EF373575.1 | Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet | 4678 | _.........a...____ | 4690 | 63 |
| DQ341367.1 | Human enterovirus 71 isolate MY821-3-SAR-97, complete genome | 6398 | ...c...........c.. | 6415 | 84 |
| DQ341367.1 | Human enterovirus 71 isolate MY821-3-SAR-97, complete genome | 5883 | ___.a...........t. | 5869 | 68 |
| DQ341368.1 | Human enterovirus 71 isolate MY104-9-SAR-97, complete genome | 6398 | ...c...........c.. | 6415 | 84 |
| DQ341368.1 | Human enterovirus 71 isolate MY104-9-SAR-97, complete genome | 5883 | ___.a...........t. | 5869 | 68 |
| AM396586.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 6398 | ...c...........c.. | 6415 | 84 |
| AM396586.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 5883 | ___.g...........t. | 5869 | 68 |
| AM396588.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 6389 | ...c...........c.. | 6406 | 84 |
| AM396588.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 5874 | ___.a...........t. | 5860 | 68 |
| EU364841.1 | Human enterovirus 71 strain 26M/AUS/4/99, complete genome | 6399 | ...c...........c.. | 6416 | 84 |
| EU364841.1 | Human enterovirus 71 strain 26M/AUS/4/99, complete genome | 5884 | ___.a...........t. | 5870 | 68 |
| EU376004.1 | Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome | 6399 | ...c...........c.. | 6416 | 84 |
| EU376004.1 | Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome | 5884 | ___.a...........t. | 5870 | 68 |
| EU376005.1 | Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome | 6399 | ...c...........c.. | 6416 | 84 |
| EU376005.1 | Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome | 5884 | ___.a...........t. | 5870 | 68 |
| AB469182.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E | 6397 | ...c...........c.. | 6414 | 84 |
| AB469182.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E | 5882 | ___.a...........t. | 5868 | 68 |
| AB469183.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71 | 7132 | ...c...........c.. | 7149 | 84 |
| AB469183.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71 | 6617 | ___.a...........t. | 6603 | 68 |
| AB550334.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o | 6397 | ...c...........c.. | 6414 | 84 |
| AB550334.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o | 5882 | ___.a...........t. | 5868 | 68 |
| AB550335.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L | 6397 | ...c...........c.. | 6414 | 84 |
| AB550335.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L | 5882 | ___.a...........t. | 5868 | 68 |
| AF316321.2 | Enterovirus 5865/sin/000009, complete genome | 6399 | _..c..t........... | 6415 | 78 |
| AF316321.2 | Enterovirus 5865/sin/000009, complete genome | 4676 | _.........a...____ | 4688 | 63 |
| AF352027.1 | Enterovirus 5666/sin/002209, complete genome | 6399 | _..c..t........... | 6415 | 78 |
| AF352027.1 | Enterovirus 5666/sin/002209, complete genome | 4676 | _.........a...____ | 4688 | 63 |
| AY421762.1 | Human coxsackievirus A4 strain High Point, complete genome | 6424 | _...........c..c.. | 6440 | 78 |
| AJ586873.1 | Human enterovirus 71 gene for polyprotein, isolate EV71/9/97/SHA89 | 6399 | _..c..t........... | 6415 | 78 |
| DQ341365.1 | Human enterovirus 71 isolate PP37-MAL-01, complete genome | 6399 | _..c..t........... | 6415 | 78 |
| DQ341365.1 | Human enterovirus 71 isolate PP37-MAL-01, complete genome | 4676 | _.........a...____ | 4688 | 63 |
| AM396587.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate UH1/P | 6399 | _..c..t........... | 6415 | 78 |
| FJ606450.1 | Human enterovirus 71 strain BJ08-Z025-5, complete genome | 6395 | _..c...........c.. | 6411 | 78 |
| FJ606450.1 | Human enterovirus 71 strain BJ08-Z025-5, complete genome | 5879 | ___.g...........t. | 5865 | 68 |
| FJ607337.1 | Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co | 6394 | _..c...........c.. | 6410 | 78 |
| FJ607337.1 | Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co | 5878 | ___.g...........t. | 5864 | 68 |
| GQ994988.1 | Human enterovirus 71 strain Anhui1-09-China, complete genome | 6395 | _..c...........c.. | 6411 | 78 |
| HQ611148.1 | Human enterovirus 71 strain AH08/06, complete genome | 6395 | _..c...........c.. | 6411 | 78 |
| D00625.1 | POL2CG1 Human poliovirus 2 genomic RNA, complete genome | 6450 | ______............ | 6461 | 63 |
| M12197.1 | POL2LAN Poliovirus type 2 (Lansing strain), complete genome | 6450 | ______............ | 6461 | 63 |
| AJ293918.1 | Human poliovirus type 3 complete genome, live-attenuated strain USOL- | 6447 | ______............ | 6458 | 63 |
| AF405682.1 | Human poliovirus 1 isolate DOR00041C1, complete genome | 4721 | __............____ | 4732 | 63 |
| AF405682.1 | Human poliovirus 1 isolate DOR00041C1, complete genome | 6451 | ______............ | 6462 | 63 |
| AF405690.1 | Human poliovirus 1 isolate DOR00013, complete genome | 4721 | __............____ | 4732 | 63 |
| AY238473.1 | Human poliovirus 2 strain MEF-1 polyprotein gene, complete cds | 6450 | ______............ | 6461 | 63 |
| AF458333.1 | Human poliovirus 1 isolate HAI01015, complete genome | 4721 | __............____ | 4732 | 63 |
| AF111966.2 | Human poliovirus 1 isolate CHN-Hainan/93-2, complete genome | 6455 | ______............ | 6466 | 63 |
| AF111984.2 | Human poliovirus 1 isolate CHN-Jiangxi/89-1, complete genome | 6454 | ______............ | 6465 | 63 |
| AY876912.1 | Human enterovirus Ningbo3-02, complete genome | 6469 | ______............ | 6480 | 63 |
| AY876912.1 | Human enterovirus Ningbo3-02, complete genome | 4738 | _...a.........____ | 4750 | 63 |
| AY876913.1 | Human enterovirus Hangzhou13-02, complete genome | 6469 | ______............ | 6480 | 63 |
| AY876913.1 | Human enterovirus Hangzhou13-02, complete genome | 4738 | _...a.........____ | 4750 | 63 |
| AB205396.1 | Human coxsackievirus A18 genomic RNA, complete genome, strain: CAM197 | 6471 | ______............ | 6482 | 63 |
| DQ443001.1 | Human coxsackievirus A24 isolate DSO-52/2005, complete genome | 6474 | ______............ | 6485 | 63 |
| DQ443001.1 | Human coxsackievirus A24 isolate DSO-52/2005, complete genome | 4743 | _...a.........____ | 4755 | 63 |
| DQ443002.1 | Human coxsackievirus A24 isolate DSO-26/2005, complete genome | 6474 | ______............ | 6485 | 63 |
| DQ443002.1 | Human coxsackievirus A24 isolate DSO-26/2005, complete genome | 4743 | _...a.........____ | 4755 | 63 |
| AY896765.1 | Human enterovirus B strain EV7-15936-01 from Azerbaijan polyprotein g | 6379 | ______............ | 6390 | 63 |
| AB501329.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2 | 6386 | ______............ | 6397 | 63 |
| AB501330.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2 | 6386 | ______............ | 6397 | 63 |
| AB501331.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: I5(1)- | 6386 | ______............ | 6397 | 63 |
| HM003207.1 | Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome | 6395 | _..cc..........c.. | 6411 | 73 |
| DQ341354.1 | Human enterovirus 71 isolate 3799-SIN-98, complete genome | 5884 | ___.a...........t. | 5870 | 68 |
| X00595.1 | Poliovirus type 2 genome (strain Sabin 2 (P712, Ch, 2ab)) | 4719 | _.........g...____ | 4731 | 63 |
| X00596.1 | Poliovirus type 3 mRNA (vaccine strain Sabin 3 (Leon 12a1b)) | 4713 | _...c.........____ | 4725 | 63 |
| X00925.1 | Poliovirus type 3 leon 12 a1b sequence (P3/Leon 12 a1b) | 4711 | _...c.........____ | 4723 | 63 |
| K01392.1 | POL3L37 Poliovirus P3/Leon/37 (type 3), complete genome | 4711 | _...c.........____ | 4723 | 63 |
| AJ416942.1 | Human poliovirus 1 genomic RNA for polyprotein, strain CHAT 10A-11 | 4720 | _...a.........____ | 4732 | 63 |
| AF462418.1 | Human poliovirus 1 99/056-252-14, complete genome | 4720 | _.........g...____ | 4732 | 63 |
| AF462419.1 | Human poliovirus 1 RUS-1161-96-001, complete genome | 4720 | _.........g...____ | 4732 | 63 |
| AY184220.1 | Human poliovirus 2 strain Sabin 2, complete genome | 4719 | _.........g...____ | 4731 | 63 |
| AY184221.1 | Human poliovirus 3 strain Sabin 3, complete genome | 4711 | _...c.........____ | 4723 | 63 |
| AY177685.1 | Human poliovirus 2, complete genome | 4719 | _.........g...____ | 4731 | 63 |
| AY278549.1 | Human poliovirus 2 isolate P2S/Mog65-3 (20120), complete genome | 4719 | _.........g...____ | 4731 | 63 |
| AY278550.1 | Human poliovirus 2 isolate P2S/Mog65-1 (20003), complete genome | 4719 | _.........g...____ | 4731 | 63 |
| AY278552.1 | Human poliovirus 2 isolate P2S/Mog65-2 (20077), complete genome | 4719 | _.........g...____ | 4731 | 63 |
| AY560657.1 | Human poliovirus 1 strain Brunhilde, complete genome | 4724 | _...c.........____ | 4736 | 63 |
| AY948201.1 | Human poliovirus 2 isolate CHN1025 polyprotein gene, complete cds | 4720 | _...c.........____ | 4732 | 63 |
| DQ205099.1 | Human poliovirus 2 clone S2R9, complete genome | 4719 | _.........g...____ | 4731 | 63 |
| DQ890385.1 | Human poliovirus 2 strain NIE0210766, complete genome | 4719 | _.........g...____ | 4731 | 63 |
| DQ890386.1 | Human poliovirus 2 strain NIE0110767, complete genome | 4721 | _.........g...____ | 4733 | 63 |
| DQ890387.1 | Human poliovirus 2 strain USA9810768, complete genome | 4719 | _.........g...____ | 4731 | 63 |
| EF456707.1 | Human poliovirus 3 isolate K/2002 polyprotein gene, complete cds | 4671 | _.........g...____ | 4683 | 63 |
| EF682354.1 | Human poliovirus 1 strain USA10779 polyprotein gene, complete cds | 4694 | _...a.........____ | 4706 | 63 |
| FM955278.1 | Human coxsackievirus A17, complete genome, genomic RNA, isolate cCA17 | 4737 | _.........a...____ | 4749 | 63 |
| FJ898290.1 | Human poliovirus 2 strain Sabine 2 isolate CHN3024/HN/CHN/1999, compl | 4719 | _.........g...____ | 4731 | 63 |
| FJ914252.2 | Human poliovirus 3 strain SWI10947, complete genome | 4715 | _.........a...____ | 4727 | 63 |
| HM107833.1 | Human poliovirus 2 isolate CHN1078, complete genome | 4719 | _.........g...____ | 4731 | 63 |
| HM107834.1 | Human poliovirus 2 isolate CHN3219, complete genome | 4719 | _.........g...____ | 4731 | 63 |
| HM107835.1 | Human poliovirus 2 isolate CHN8316, complete genome | 4719 | _.........g...____ | 4731 | 63 |
| AY843308.1 | Human enterovirus 101 strain CIV03-10361, complete genome | 1680 | ___..g..........__ | 1692 | 63 |
| AY421766.1 | Human coxsackievirus A8 strain Donovan, complete genome | 4661 | _...a.........____ | 4673 | 63 |
| AY697460.1 | Human enterovirus 90 polyprotein gene, complete cds | 4682 | _.........c...____ | 4694 | 63 |
| AB192877.1 | Human enterovirus 90 genomic RNA, complete genome | 4682 | _.........c...____ | 4694 | 63 |
| DQ341359.1 | Human enterovirus 71 isolate S10862-SAR-98, complete genome | 4674 | _...a.........____ | 4686 | 63 |
| GU366191.1 | Human enterovirus 71 strain Henan10-08-China, complete genome | 4672 | _.........a...____ | 4684 | 63 |
| AB575911.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100 | 4611 | _.........g...____ | 4623 | 63 |
| AB575912.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 108 | 4625 | _.........g...____ | 4637 | 63 |
| D90457.1 | CXA24CG Human coxsackievirus A24 DNA, complete genome | 6475 | _______........... | 6485 | 57 |
| AF111983.3 | Human poliovirus 1 isolate CHN-Henan/91-3, complete genome | 6456 | _______........... | 6466 | 57 |
| D00627.1 | CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G | 6426 | _______........... | 6436 | 57 |
| X84981.1 | Echovirus 9 (strain Hill), complete genome | 6398 | _______........... | 6408 | 57 |
| U16283.1 | E6U16283 Echovirus 6 lytic strain, complete genome | 6394 | _______........... | 6404 | 57 |
| U57056.1 | CXU57056 Coxsackievirus B3 Woodruff variant, complete genome | 6377 | _______........... | 6387 | 57 |
| AF039205.1 | Coxsackievirus B6 strain Schmitt, complete genome | 6375 | _______........... | 6385 | 57 |
| AF105342.1 | Coxsackievirus B6 strain Schmitt, complete genome | 6375 | _______........... | 6385 | 57 |
| AF114384.1 | Coxsackievirus B6 strain Schmitt, complete genome | 6374 | _______........... | 6384 | 57 |
| AF317694.1 | Human echovirus 18 strain Metcalf polyprotein gene, complete cds | 6387 | _______........... | 6397 | 57 |
| AF465517.1 | Human echovirus 6 strain Charles, complete genome | 6395 | _______........... | 6405 | 57 |
| AY302541.1 | Human echovirus 15 strain CH 96-51 complete genome | 6414 | _______........... | 6424 | 57 |
| AY302549.1 | Human echovirus 25 strain JV-4 complete genome | 6403 | _______........... | 6413 | 57 |
| AY302551.1 | Human echovirus 27 strain Bacon complete genome | 6388 | _______........... | 6398 | 57 |
| AY302557.1 | Human echovirus 4 strain Pesacek complete genome | 6371 | _______........... | 6381 | 57 |
| AY302558.1 | Human echovirus 6 strain D'Amori complete genome | 6395 | _______........... | 6405 | 57 |
| AY556070.1 | Enterovirus 75 strain USA/OK85-10362, complete genome | 6406 | _______........... | 6416 | 57 |
| AY896762.1 | Human enterovirus B strain CBV3-11059-99 from Uzbekistan polyprotein | 6357 | _______........... | 6367 | 57 |
| AY896763.1 | Human enterovirus B strain CBV3-18219-02 from Moldova polyprotein gen | 6352 | _______........... | 6362 | 57 |
| AY843300.1 | Human enterovirus 82 strain USA/CA64-10390, complete genome | 6410 | _______........... | 6420 | 57 |
| AY843302.1 | Human enterovirus 77 strain USA/TX97-10394, complete genome | 6399 | _______........... | 6409 | 57 |
| EU147493.1 | Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds | 6370 | _______........... | 6380 | 57 |
| FJ000001.1 | Human coxsackievirus B3 strain Fuyang19, complete genome | 6376 | _______........... | 6386 | 57 |
| GQ141875.1 | Human coxsackievirus B3 strain Beijing0811, complete genome | 6378 | _______........... | 6388 | 57 |
| HM031191.1 | Human echovirus 25 strain HN-2, complete genome | 6405 | _______........... | 6415 | 57 |
| HM185055.1 | Human echovirus 6 strain Echo6/Henan/116/2008, complete genome | 6396 | _______........... | 6406 | 57 |
| HM185056.1 | Human enterovirus B strain EVB/Henan/127/2008, complete genome | 6373 | _______........... | 6383 | 57 |