../../tmp/servers/virsirnadb/1919923652
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi2216 | 1 | ggaccaaaagaaacaccatcc | 21 | |
| D28917.1 | HPCK3A Hepatitis C virus (isolate HCV-K3a/650) genomic RNA, complete g | 370 | __................... | 388 | 90 |
| X76918.1 | Hepatitis C virus genes for core, envelope and NS1 proteins | 329 | __................... | 347 | 90 |
| AF046866.1 | Hepatitis C virus subtype 3a strain CB polyprotein gene, complete cds | 370 | __................... | 388 | 90 |
| DQ437509.2 | Hepatitis C virus isolate 452 polyprotein gene, partial cds | 31 | __................... | 49 | 90 |
| GQ275355.1 | Hepatitis C virus subtype 3a, complete genome | 370 | __................... | 388 | 90 |
| D17763.1 | HPCEGS Hepatitis C virus (isolate NZL1) genomic RNA, complete genome | 370 | __................... | 388 | 90 |
| D00944.1 | HPCPOLP Hepatitis C virus genomic RNA for polyprotein, complete cds | 371 | __................a.. | 389 | 85 |
| D63822.1 | HPCJK046E2 Hepatitis C virus (isolate JK046) genomic RNA, complete gen | 369 | __................a.. | 387 | 85 |
| Y12083.1 | Hepatitis C virus genotype 6a RNA for HCV polyprotein | 314 | __................a.. | 332 | 85 |
| AF064490.1 | Hepatitis C virus (isolate SA13) polyprotein gene, complete cds | 277 | __................a.. | 295 | 85 |
| AF169003.1 | Hepatitis C virus subtype 2a isolate G2aK1, complete genome | 371 | __................a.. | 389 | 85 |
| AF169005.1 | Hepatitis C virus subtype 2a isolate NDM59, complete genome | 371 | __................g.. | 389 | 85 |
| AB047639.1 | Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome | 371 | __................a.. | 389 | 85 |
| AB047642.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 | 371 | __................g.. | 389 | 85 |
| AB047644.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 | 371 | __................a.. | 389 | 85 |
| AY859526.1 | Hepatitis C virus (isolate 6a33), complete genome | 326 | __................a.. | 344 | 85 |
| AY878650.1 | Hepatitis C virus subtype 6k isolate KM45, complete genome | 355 | __................a.. | 373 | 85 |
| AY878651.1 | Hepatitis C virus subtype 6k isolate KM41, complete genome | 340 | __................a.. | 358 | 85 |
| DQ278891.1 | Hepatitis C virus subtype 6k isolate KM45, complete genome | 371 | __................a.. | 389 | 85 |
| DQ278893.1 | Hepatitis C virus subtype 6k isolate KM41, complete genome | 372 | __................a.. | 390 | 85 |
| DQ314806.1 | Hepatitis C virus subtype 6g isolate HK6554, complete genome | 369 | __................a.. | 387 | 85 |
| DQ278892.1 | Hepatitis C virus isolate GZ52557, complete genome | 370 | __................a.. | 388 | 85 |
| DQ480512.1 | Hepatitis C virus subtype 6a strain 6a77, complete genome | 329 | __................a.. | 347 | 85 |
| DQ480513.1 | Hepatitis C virus subtype 6a strain 6a35, complete genome | 329 | __................a.. | 347 | 85 |
| DQ480514.1 | Hepatitis C virus subtype 6a strain 6a63, complete genome | 329 | __................a.. | 347 | 85 |
| DQ480515.1 | Hepatitis C virus subtype 6a strain 6a64, complete genome | 329 | __................a.. | 347 | 85 |
| DQ480516.1 | Hepatitis C virus subtype 6a strain 6a61, complete genome | 329 | __................a.. | 347 | 85 |
| DQ480517.1 | Hepatitis C virus subtype 6a strain 6a73, complete genome | 329 | __................a.. | 347 | 85 |
| DQ480518.1 | Hepatitis C virus subtype 6a strain 6a65, complete genome | 329 | __................a.. | 347 | 85 |
| DQ480519.1 | Hepatitis C virus subtype 6a strain 6a66, complete genome | 329 | __................a.. | 347 | 85 |
| DQ480520.1 | Hepatitis C virus subtype 6a strain 6a67, complete genome | 329 | __................a.. | 347 | 85 |
| DQ480521.1 | Hepatitis C virus subtype 6a strain 6a69, complete genome | 329 | __................a.. | 347 | 85 |
| DQ480522.1 | Hepatitis C virus subtype 6a strain 6a72, complete genome | 329 | __................a.. | 347 | 85 |
| DQ480523.1 | Hepatitis C virus subtype 6a strain 6a62, complete genome | 329 | __................a.. | 347 | 85 |
| DQ835760.1 | Hepatitis C virus subtype 6f isolate C-0044, complete genome | 369 | __................a.. | 387 | 85 |
| DQ835764.1 | Hepatitis C virus subtype 6f isolate C-0046, complete genome | 369 | __................a.. | 387 | 85 |
| DQ835769.1 | Hepatitis C virus subtype 6j isolate Th553, complete genome | 369 | __................a.. | 387 | 85 |
| EF424625.1 | Hepatitis C virus subtype 6q isolate QC99, complete genome | 370 | __................a.. | 388 | 85 |
| EF424627.1 | Hepatitis C virus subtype 6o isolate QC227, complete genome | 369 | __...............g... | 387 | 85 |
| EF424628.1 | Hepatitis C virus subtype 6l isolate 537796, complete genome | 369 | __................a.. | 387 | 85 |
| EF424629.1 | Hepatitis C virus subtype 6c isolate Th846, complete genome | 370 | __................a.. | 388 | 85 |
| EU246930.1 | Hepatitis C virus strain D9 polyprotein gene, complete cds | 347 | __................a.. | 365 | 85 |
| EU246933.1 | Hepatitis C virus strain D33 polyprotein gene, complete cds | 344 | __................a.. | 362 | 85 |
| EU246939.1 | Hepatitis C virus strain D49 polyprotein gene, complete cds | 344 | __................a.. | 362 | 85 |
| EU408326.1 | Hepatitis C virus isolate 537798 polyprotein precursor, gene, complet | 369 | __.....c............. | 387 | 85 |
| EU408327.1 | Hepatitis C virus isolate 535318 polyprotein precursor, gene, complet | 369 | __................c.. | 387 | 85 |
| AM910652.2 | Hepatitis C virus subtype 1g complete genome | 344 | __................a.. | 362 | 85 |
| AM910652.2 | Hepatitis C virus subtype 1g complete genome | 2548 | ____..c...g.......... | 2532 | 71 |
| EU158186.1 | Hepatitis C virus isolate NK46, complete genome | 338 | __................a.. | 356 | 85 |
| EU798760.1 | Hepatitis C virus subtype 6v isolate KMN-02 polyprotein precursor, ge | 369 | __................a.. | 387 | 85 |
| EU798761.1 | Hepatitis C virus subtype 6v isolate KM046 polyprotein precursor, gen | 338 | __................a.. | 356 | 85 |
| EU643834.1 | Hepatitis C virus isolate HCV-6-D140 polyprotein gene, complete cds | 96 | __................a.. | 114 | 85 |
| EU643836.1 | Hepatitis C virus isolate HCV-6-D370 polyprotein gene, complete cds | 96 | __................a.. | 114 | 85 |
| FJ435090.1 | Hepatitis C virus isolate KM181 genotype 6v, complete genome | 369 | __................a.. | 387 | 85 |
| D84262.2 | Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC | 373 | __................a.. | 391 | 85 |
| Y13184.1 | Hepatitis C virus genotype 5a RNA for HCV polyprotein TTCACGCAGAAAGCG | 310 | __................a.. | 328 | 85 |
| AF177036.1 | Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen | 371 | __................a.. | 389 | 85 |
| AY878652.1 | Hepatitis C virus subtype 6n isolate KM42, complete genome | 339 | __...........y....a.. | 357 | 80 |
| DQ278894.1 | Hepatitis C virus subtype 6n isolate KM42, complete genome | 373 | __...........y....a.. | 391 | 80 |
| D10988.1 | HPCJ8G Hepatitis C virus genome | 372 | __..............a.a.. | 390 | 80 |
| D63821.1 | HPCJK049E1 Hepatitis C virus (isolate JK049) genomic RNA, complete gen | 370 | __.............t..a.. | 388 | 80 |
| D50409.1 | Hepatitis C virus (isolate BEBE1) genomic RNA, complete genome | 371 | __..............t.a.. | 389 | 80 |
| AB031663.1 | Hepatitis C virus (isolate VAT96) genomic RNA, complete genome | 372 | __..............a.a.. | 390 | 80 |
| AF169002.1 | Hepatitis C virus subtype 2a isolate NDM228, complete genome | 371 | __..............t.a.. | 389 | 80 |
| AF169002.1 | Hepatitis C virus subtype 2a isolate NDM228, complete genome | 8281 | ____..........t...c.. | 8265 | 71 |
| AF238481.1 | Hepatitis C virus subtype 2a strain MD2a-1, complete genome | 337 | __..............t.a.. | 355 | 80 |
| AF238483.1 | Hepatitis C virus subtype 2a strain MD2a-4, complete genome | 337 | __..............t.a.. | 355 | 80 |
| AF238484.1 | Hepatitis C virus subtype 2a strain MD2a-5, complete genome | 337 | __..............t.a.. | 355 | 80 |
| AF238485.1 | Hepatitis C virus subtype 2a strain MD2a-7, complete genome | 337 | __..............t.a.. | 355 | 80 |
| AB030907.1 | Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome | 372 | __..............a.a.. | 390 | 80 |
| AB047640.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 | 371 | __..............t.a.. | 389 | 80 |
| AB047641.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 | 371 | __..............t.a.. | 389 | 80 |
| AB047643.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 | 371 | __..............t.a.. | 389 | 80 |
| AB047645.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 | 371 | __..............t.a.. | 389 | 80 |
| AY232730.1 | Hepatitis C virus clone MD2b1-1 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232731.1 | Hepatitis C virus clone MD2b1-2 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232732.1 | Hepatitis C virus clone MD2b2-1 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232733.1 | Hepatitis C virus clone MD2b2-2 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232734.1 | Hepatitis C virus clone MD2b3-1 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232735.1 | Hepatitis C virus clone MD2b3-2 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232736.1 | Hepatitis C virus clone MD2b4-1 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232737.1 | Hepatitis C virus clone MD2b4-2 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232738.1 | Hepatitis C virus clone MD2b5-1 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232740.1 | Hepatitis C virus clone MD2b6-1 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232741.1 | Hepatitis C virus clone MD2b6-2 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232742.1 | Hepatitis C virus clone MD2b7-1 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232743.1 | Hepatitis C virus clone MD2b7-2 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232744.1 | Hepatitis C virus clone MD2b8-1 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232745.1 | Hepatitis C virus clone MD2b8-2 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232746.1 | Hepatitis C virus clone MD2b9-1 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232747.1 | Hepatitis C virus clone MD2b9-2 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232748.1 | Hepatitis C virus clone MD2b10-1 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY232749.1 | Hepatitis C virus clone MD2b10-2 polyprotein mRNA, complete cds | 335 | __..............a.a.. | 353 | 80 |
| AY587845.1 | Hepatitis C virus strain RF1_2k/1b, N687 polyprotein gene, complete c | 299 | __..............a.a.. | 317 | 80 |
| D84264.2 | Hepatitis C virus (isolate VN405) genomic RNA, complete genome | 369 | __..............t.a.. | 387 | 80 |
| D84265.2 | Hepatitis C virus (isolate VN004) genomic RNA, complete genome | 369 | __..............t.a.. | 387 | 80 |
| DQ155561.1 | Hepatitis C virus (isolate D54) polyprotein gene, partial cds | 344 | __..............t.a.. | 362 | 80 |
| DQ314805.1 | Hepatitis C virus subtype 6e isolate GX004, complete genome | 369 | __..............a.c.. | 387 | 80 |
| DQ480524.1 | Hepatitis C virus subtype 6a strain 6a74, complete genome | 329 | __...c............a.. | 347 | 80 |
| DQ835770.1 | Hepatitis C virus subtype 6i isolate Th602, complete genome | 369 | __..............t.a.. | 387 | 80 |
| EF424626.1 | Hepatitis C virus subtype 6p isolate QC216, complete genome | 370 | __..............a.a.. | 388 | 80 |
| EF632070.1 | Hepatitis C virus isolate TV249, complete genome | 369 | __..............t.a.. | 387 | 80 |
| EF632071.1 | Hepatitis C virus isolate VT21, complete genome | 355 | __..............t.a.. | 373 | 80 |
| EU246935.1 | Hepatitis C virus strain TH24 polyprotein gene, complete cds | 310 | __..............t.a.. | 328 | 80 |
| EU155219.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V146/2002, complet | 320 | __......c.t.......... | 338 | 80 |
| EU255958.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V265/2005, complet | 298 | __......c.t.......... | 316 | 80 |
| EU643835.1 | Hepatitis C virus isolate HCV-6-D177 polyprotein gene, complete cds | 96 | __..............a.a.. | 114 | 80 |
| FJ821465.1 | Hepatitis C virus strain M21-2k/1b, complete genome | 346 | __..............a.a.. | 364 | 80 |
| AB559564.1 | Hepatitis C virus HCV gene for hepatitis C virus polyprotein, complet | 372 | __..............a.a.. | 390 | 80 |
| FN666428.2 | Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol | 344 | __..............t.a.. | 362 | 80 |
| DQ835762.1 | Hepatitis C virus subtype 6i isolate C-0159, complete genome | 369 | __.............._____ | 382 | 66 |
| FJ407092.1 | Hepatitis C virus isolate IND-HCV-3i, complete genome | 371 | __.............._____ | 384 | 66 |
| D49374.1 | HPCFG Hepatitis C virus (isolate Tr Kj) genomic RNA, complete genome | 370 | __..a...........ac... | 388 | 76 |
| AF169004.1 | Hepatitis C virus subtype 2a isolate G2aK3, complete genome | 371 | __...........t..t.a.. | 389 | 76 |
| AF238482.1 | Hepatitis C virus subtype 2a strain MD2a-2, complete genome | 337 | __...........t..t.a.. | 355 | 76 |
| AF238486.1 | Hepatitis C virus subtype 2b strain MD2b-1, complete genome | 335 | __..........g...a.a.. | 353 | 76 |
| AY232739.1 | Hepatitis C virus clone MD2b5-2 polyprotein mRNA, complete cds | 335 | __.............ta.a.. | 353 | 76 |
| AY746460.1 | Hepatitis C virus genotype 2a polyprotein gene, complete cds | 371 | __...c..........t.a.. | 389 | 76 |
| DQ835761.1 | Hepatitis C virus subtype 6j isolate C-0667, complete genome | 369 | __..t..g..........a.. | 387 | 76 |
| EF632069.1 | Hepatitis C virus isolate TV241, complete genome | 369 | __..a..c..........a.. | 387 | 76 |
| D84263.2 | Hepatitis C virus (isolate VN235) genomic RNA, complete genome | 367 | .a.a.c..........a.a.. | 387 | 76 |