../../tmp/servers/virsirnadb/1512707678
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi2218 | 1 | ggtcgctggggtgaccgggtc | 21 | |
| D28917.1 | HPCK3A Hepatitis C virus (isolate HCV-K3a/650) genomic RNA, complete g | 172 | __................... | 190 | 90 |
| X76918.1 | Hepatitis C virus genes for core, envelope and NS1 proteins | 131 | __................... | 149 | 90 |
| AF046866.1 | Hepatitis C virus subtype 3a strain CB polyprotein gene, complete cds | 172 | __................... | 190 | 90 |
| GQ275355.1 | Hepatitis C virus subtype 3a, complete genome | 172 | __................... | 190 | 90 |
| D17763.1 | HPCEGS Hepatitis C virus (isolate NZL1) genomic RNA, complete genome | 172 | __................... | 190 | 90 |
| FJ407092.1 | Hepatitis C virus isolate IND-HCV-3i, complete genome | 172 | __....c.............. | 190 | 85 |
| D49374.1 | HPCFG Hepatitis C virus (isolate Tr Kj) genomic RNA, complete genome | 172 | __....c...a.......... | 190 | 80 |
| D63821.1 | HPCJK049E1 Hepatitis C virus (isolate JK049) genomic RNA, complete gen | 172 | __....c...t.......... | 190 | 80 |
| DQ418782.1 | Hepatitis C virus subtype 4a isolate 01-09 polyprotein gene, complete | 87 | __....c...a.......... | 105 | 80 |
| DQ418783.1 | Hepatitis C virus subtype 4a isolate 02-42 polyprotein gene, complete | 52 | __....c...a.......... | 70 | 80 |
| DQ418785.1 | Hepatitis C virus isolate 02Q polyprotein gene, partial cds | 95 | __....c...a.......... | 113 | 80 |
| DQ418786.1 | Hepatitis C virus subtype 4d isolate 03-18 polyprotein gene, complete | 67 | __....c...a.......... | 85 | 80 |
| DQ418787.1 | Hepatitis C virus subtype 4a isolate F753 polyprotein gene, complete | 95 | __....c...a.......... | 113 | 80 |
| DQ418788.1 | Hepatitis C virus subtype 4a isolate F7157 polyprotein gene, complete | 95 | __....c...a.......... | 113 | 80 |
| DQ418789.1 | Hepatitis C virus subtype 4a isolate L835 polyprotein gene, complete | 94 | __....c...a.......... | 112 | 80 |
| DQ516083.1 | Hepatitis C virus subtype 4d isolate 24 polyprotein gene, complete cd | 112 | __....c...a.......... | 130 | 80 |
| DQ516084.1 | Hepatitis C virus subtype 4a isolate 25 polyprotein gene, complete cd | 112 | __....c...a.......... | 130 | 80 |
| DQ988073.1 | Hepatitis C virus isolate Eg2 polyprotein gene, partial cds | 92 | __....c...a.......... | 110 | 80 |
| DQ988074.1 | Hepatitis C virus isolate Eg3 polyprotein gene, partial cds | 92 | __....c...a.......... | 110 | 80 |
| DQ988075.1 | Hepatitis C virus isolate Eg4 polyprotein gene, partial cds | 92 | __....c...a.......... | 110 | 80 |
| DQ988076.1 | Hepatitis C virus isolate Eg7 polyprotein gene, partial cds | 92 | __....c...a.......... | 110 | 80 |
| DQ988077.1 | Hepatitis C virus isolate Eg9 polyprotein gene, partial cds | 92 | __....c...t.......... | 110 | 80 |
| DQ988078.1 | Hepatitis C virus isolate Eg10 polyprotein gene, partial cds | 88 | __....c...a.......... | 106 | 80 |
| DQ988079.1 | Hepatitis C virus isolate Eg12 polyprotein gene, partial cds | 92 | __....c...a.......... | 110 | 80 |
| FJ025854.1 | Hepatitis C virus strain P026 polyprotein gene, complete cds | 23 | __....c....c......... | 41 | 80 |
| FJ025855.1 | Hepatitis C virus strain P212 polyprotein gene, complete cds | 23 | __....c...a.......... | 41 | 80 |
| FJ025856.1 | Hepatitis C virus strain P245 polyprotein gene, complete cds | 23 | __....c...a.......... | 41 | 80 |
| FJ462434.1 | Hepatitis C virus isolate QC262, complete genome | 173 | __....c...a.......... | 191 | 80 |
| FJ462436.1 | Hepatitis C virus isolate QC381, complete genome | 173 | __....c...a.......... | 191 | 80 |
| FJ462437.1 | Hepatitis C virus isolate QC382, complete genome | 173 | __....c...a.......... | 191 | 80 |
| FJ462438.1 | Hepatitis C virus isolate QC383, complete genome | 173 | __....c...a.......... | 191 | 80 |
| FJ462441.1 | Hepatitis C virus isolate QC97, complete genome | 173 | __....c...a.......... | 191 | 80 |
| Y11604.1 | Hepatitis C virus type 4a RNA for HCV polyprotein | 112 | __....c...a.......... | 130 | 80 |
| AF064490.1 | Hepatitis C virus (isolate SA13) polyprotein gene, complete cds | 79 | __.t..c...a.......... | 97 | 76 |
| DQ418784.1 | Hepatitis C virus subtype 4a isolate 02C polyprotein gene, complete c | 97 | __....c.a.a.......... | 115 | 76 |
| EF589160.1 | Hepatitis C virus subtype 4f strain IFBT84 polyprotein gene, partial | 107 | __.t..c...a.......... | 125 | 76 |
| FJ462431.1 | Hepatitis C virus isolate QC139, complete genome | 173 | __....c...ac......... | 191 | 76 |
| FJ462432.1 | Hepatitis C virus isolate QC193, complete genome | 173 | __....c...ac......... | 191 | 76 |
| FJ462435.1 | Hepatitis C virus isolate QC264, complete genome | 173 | __....c...ac......... | 191 | 76 |
| FJ462435.1 | Hepatitis C virus isolate QC264, complete genome | 3551 | _.g.a.........a....__ | 3568 | 71 |
| FJ462440.1 | Hepatitis C virus isolate QC93, complete genome | 173 | __....c...ac......... | 191 | 76 |
| FJ839869.1 | Hepatitis C virus isolate QC155, complete genome | 173 | __....c...ac......... | 191 | 76 |
| FJ839870.1 | Hepatitis C virus isolate QC274, complete genome | 173 | __....c...ac......... | 191 | 76 |
| Y13184.1 | Hepatitis C virus genotype 5a RNA for HCV polyprotein TTCACGCAGAAAGCG | 112 | __.t..c...a.......... | 130 | 76 |
| D84265.2 | Hepatitis C virus (isolate VN004) genomic RNA, complete genome | 8783 | ______.........a..... | 8769 | 66 |
| AY746460.1 | Hepatitis C virus genotype 2a polyprotein gene, complete cds | 1474 | ..c..........ga..c.._ | 1493 | 76 |
| EF407411.1 | Hepatitis C virus isolate 5043 polyprotein gene, complete cds | 1959 | __...ga...........___ | 1974 | 66 |
| AF238484.1 | Hepatitis C virus subtype 2a strain MD2a-5, complete genome | 1437 | ..c..........ga..c.a. | 1457 | 76 |