../../tmp/servers/virsirnadb/1378781023
Result for your query siRNA sequence
RED | =100 % Complementary sequence |
. | =Identical residue |
blue alphabets | =mismatch |
_ | =Gap |
Acc number | Strain name | Start | Alignment | End | % Identity |
Query | virsi2062 | 1 | ggtggatgttgtagacatg | 19 | |
NC_004280.1 | Mammalian orthoreovirus 3 segment M1, complete sequence | 895 | ................... | 913 | 100 |
AF461683.1 | Mammalian orthoreovirus 3 strain Dearing minor core protein mu-2 (M1) | 895 | ................... | 913 | 100 |
AF461684.1 | Mammalian orthoreovirus 3 strain Dearing minor core protein mu-2 (M1) | 895 | ................... | 913 | 100 |
AY428878.1 | Mammalian orthoreovirus 3 strain tsC447 minor core protein mu2 gene, | 895 | ................... | 913 | 100 |
AY551083.1 | Mammalian orthoreovirus 3 minor core protein mu2 (M1) mRNA, complete | 895 | ................... | 913 | 100 |
EF494438.1 | Mammalian orthoreovirus 3 strain T3D segment M1, complete sequence | 895 | ................... | 913 | 100 |
HM159616.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment M1, complete seq | 895 | ................... | 913 | 100 |
GU991662.1 | Mammalian orthoreovirus 3 isolate R124 segment M1, complete sequence | 895 | ................... | 913 | 100 |
GU991672.1 | Mammalian orthoreovirus 3 isolate Q2R segment M1, complete sequence | 895 | ................... | 913 | 100 |
NC_004280.1 | Mammalian orthoreovirus 3 segment M1, complete sequence | 895 | ................... | 913 | 100 |
X59945.1 | Reovirus type 1 Lang gene for mu2 protein, genomic RNA | 895 | ................g.. | 913 | 94 |
AY428870.1 | Mammalian orthoreovirus 1 clone 11 minor core protein mu2 gene, compl | 895 | ................g.. | 913 | 94 |
AY428871.1 | Mammalian orthoreovirus 1 clone 29 minor core protein mu2 gene, compl | 895 | ................g.. | 913 | 94 |
AY428873.1 | Mammalian orthoreovirus 2 strain Netherlands 84 minor core protein mu | 895 | ................g.. | 913 | 94 |
AY428874.1 | Mammalian orthoreovirus 2 strain SV59 minor core protein mu2 gene, co | 895 | ................g.. | 913 | 94 |
AY428875.1 | Mammalian orthoreovirus 3 clone 18 minor core protein mu2 gene, compl | 895 | ................g.. | 913 | 94 |
AY428876.1 | Mammalian orthoreovirus 3 clone 44 minor core protein mu2 gene, compl | 895 | ................g.. | 913 | 94 |
AY428877.1 | Mammalian orthoreovirus 3 strain Netherlands 83 minor core protein mu | 895 | ................g.. | 913 | 94 |
HQ642772.1 | Mammalian orthoreovirus strain MRV-HLJ/2007 mu-2 protein gene, comple | 895 | ...a............g.. | 913 | 89 |
GU196309.1 | Mammalian orthoreovirus 2 segment M1 u2 protein gene, complete cds | 882 | ......c.........g.. | 900 | 89 |
GU196309.1 | Mammalian orthoreovirus 2 segment M1 u2 protein gene, complete cds | 912 | .........g.cc..____ | 926 | 63 |
GU589580.1 | Mammalian orthoreovirus 3 strain Abney segment M1, complete sequence | 896 | _..a............g.. | 913 | 84 |
DQ396804.2 | Mammalian orthoreovirus strain SC-A segment M1 mu-2 protein gene, com | 895 | .a.a............g.. | 913 | 84 |
NC_013227.1 | Mammalian orthoreovirus 3 segment M1, complete genome | 895 | .........c...a..g._ | 912 | 78 |
NC_013227.1 | Mammalian orthoreovirus 3 segment M1, complete genome | 925 | .........g.cc..____ | 939 | 63 |
DQ664187.1 | Mammalian orthoreovirus 2 isolate BYD1 segment M1, complete sequence | 895 | .........c..g..tg.. | 913 | 78 |
DQ664187.1 | Mammalian orthoreovirus 2 isolate BYD1 segment M1, complete sequence | 925 | .........g.cc..____ | 939 | 63 |
NC_004275.1 | Mammalian orthoreovirus 3 segment L2, complete sequence | 2586 | _..........g.______ | 2597 | 57 |
NC_013225.1 | Mammalian orthoreovirus 3 segment L1, complete genome | 131 | ________.........._ | 122 | 52 |
NC_004282.4 | Mammalian orthoreovirus 3 segment L1, complete sequence | 155 | ________.........._ | 146 | 52 |
NC_004274.1 | Mammalian orthoreovirus 3 segment L3, complete sequence | 1354 | .........ct.c..g.__ | 1370 | 68 |
M23747.1 | REOMCPL1A Reovirus type 3 major core protein lambda-1 from L3 genome s | 1354 | .........ct.c..g.__ | 1370 | 68 |
DQ664186.1 | Mammalian orthoreovirus 2 isolate BYD1 segment L3, complete sequence | 1354 | .........ct.c..g.__ | 1370 | 68 |
EF029088.1 | Mammalian orthoreovirus isolate SC-A segment L3, complete sequence | 1354 | .........at.c..g.__ | 1370 | 68 |
EF494437.1 | Mammalian orthoreovirus 3 strain T3D segment L3, complete sequence | 1354 | .........ct.c..g.__ | 1370 | 68 |
GU196308.1 | Mammalian orthoreovirus 2 segment L3 lambda-1 protein gene, complete | 1352 | .........at.c..g.__ | 1368 | 68 |
GU589579.1 | Mammalian orthoreovirus 3 strain Abney segment L3, complete sequence | 1354 | .........ct.c..g.__ | 1370 | 68 |
HM159615.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment L3, complete seq | 1354 | .........ct.c..g.__ | 1370 | 68 |
GU991661.1 | Mammalian orthoreovirus 3 isolate R124 segment L3, complete sequence | 1354 | .........ct.c..g.__ | 1370 | 68 |
GU991671.1 | Mammalian orthoreovirus 3 isolate Q2R segment L3, complete sequence | 1354 | .........ct.c..g.__ | 1370 | 68 |
NC_004274.1 | Mammalian orthoreovirus 3 segment L3, complete sequence | 1354 | .........ct.c..g.__ | 1370 | 68 |
NC_004281.1 | Mammalian orthoreovirus 3 segment M3, complete sequence | 619 | _.........tct...___ | 633 | 63 |
NC_004281.1 | Mammalian orthoreovirus 3 segment M3, complete sequence | 619 | _.........tct...___ | 633 | 63 |
DQ220020.1 | Reovirus sp. T2W segment S2 core nodule protein gene, complete cds | 968 | __.........________ | 960 | 47 |