../../tmp/servers/virsirnadb/729801867
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1396 | 1 | ggttaggatgtatgtgggg | 19 | |
| D13558.1 | HPCJ483 Hepatitis C virus genome, complete sequence | 2225 | ................... | 2243 | 100 |
| D10750.1 | HPCJ491 Hepatitis C virus genome, complete sequence | 2225 | ................... | 2243 | 100 |
| D11168.1 | HPCJTA Hepatitis C virus (HCV) complete genome | 2225 | ................... | 2243 | 100 |
| D11355.1 | HPCJTB Hepatitis C virus genomic RNA, complete genome, strain: JT' | 2225 | ................... | 2243 | 100 |
| M58335.1 | HPCHUMR Hepatitis C virus subtype 1b, complete genome | 2216 | ................... | 2234 | 100 |
| S62220.1 | Hepatitis C virus subtype 1b, complete genome | 2224 | ................... | 2242 | 100 |
| D10934.1 | HPCRNA Hepatitis C virus RNA, complete genome sequence | 2225 | ................... | 2243 | 100 |
| D30613.1 | HPCPP Hepatitis C virus complete genome sequence | 2225 | ................... | 2243 | 100 |
| D30613.1 | HPCPP Hepatitis C virus complete genome sequence | 1164 | _______............ | 1175 | 63 |
| D50483.1 | HPCK1S1 Hepatitis C virus (strain HCV-1b, clone HCV-K1-S1), complete g | 2213 | ................... | 2231 | 100 |
| D50485.1 | HPCK1S2 Hepatitis C virus (strain HCV-1b, clone HCV-K1-S2), complete g | 2213 | ................... | 2231 | 100 |
| D50481.1 | HPCK1R2 Hepatitis C virus (strain HCV-1b, clone HCV-K1-R2), complete g | 2213 | ................... | 2231 | 100 |
| D50480.1 | HPCK1R1 Hepatitis C virus (strain HCV-1b, clone HCV-K1-R1), complete g | 2213 | ................... | 2231 | 100 |
| D14484.1 | HPCJRNA Hepatitis C virus strain J33 genomic RNA, complete genome | 2225 | ................... | 2243 | 100 |
| U45476.1 | HCU45476 Hepatitis C virus isolate HD-1, complete genome | 2225 | ................... | 2243 | 100 |
| D45172.1 | HPCHCPO Hepatitis C virus genomic RNA for HCV polyprotein, complete cd | 2225 | ................... | 2243 | 100 |
| D45172.1 | HPCHCPO Hepatitis C virus genomic RNA for HCV polyprotein, complete cd | 1164 | _______............ | 1175 | 63 |
| D85516.1 | Hepatitis C virus genomic RNA, complete cds | 2225 | ................... | 2243 | 100 |
| AJ000009.1 | Hepatitis C virus complete genome sequence | 2208 | ................... | 2226 | 100 |
| D89815.1 | Hepatitis C virus genomic RNA, complete sequence | 2225 | ................... | 2243 | 100 |
| AF054247.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete | 2225 | ................... | 2243 | 100 |
| AF054248.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete | 2225 | ................... | 2243 | 100 |
| AF054249.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete | 2226 | ................... | 2244 | 100 |
| AF054250.1 | Hepatitis C virus subtype 1b strain HC-J4, complete genome | 2215 | ................... | 2233 | 100 |
| AJ132996.1 | Hepatitis C virus, complete genome, isolate HCV-AD78 | 2230 | ................... | 2248 | 100 |
| AJ132997.1 | Hepatitis C virus, complete genome, isolate HCV-AD78P1 | 2224 | ................... | 2242 | 100 |
| AF176573.1 | Hepatitis C virus subtype 1b strain 274933RU, complete genome | 2225 | ................... | 2243 | 100 |
| AF165047.1 | Hepatitis C virus subtype 1b strain MD2-1, complete genome | 2213 | ................... | 2231 | 100 |
| AF165048.1 | Hepatitis C virus subtype 1b strain MD2-2, complete genome | 2213 | ................... | 2231 | 100 |
| AF165057.1 | Hepatitis C virus subtype 1b strain MD7-1, complete genome | 2213 | ................... | 2231 | 100 |
| AF165059.1 | Hepatitis C virus subtype 1b strain MD8-1, complete genome | 2213 | ................... | 2231 | 100 |
| AF165060.1 | Hepatitis C virus subtype 1b strain MD8-2, complete genome | 2213 | ................... | 2231 | 100 |
| AF208024.1 | Hepatitis C virus subtype 1b strain MD34, complete genome | 2207 | ................... | 2225 | 100 |
| AF207752.1 | Hepatitis C virus subtype 1b strain MD11, complete genome | 2213 | ................... | 2231 | 100 |
| AF207754.1 | Hepatitis C virus subtype 1b strain MD13, complete genome | 2213 | ................... | 2231 | 100 |
| AF207756.1 | Hepatitis C virus subtype 1b strain MD15, complete genome | 2213 | ................... | 2231 | 100 |
| AF207758.1 | Hepatitis C virus subtype 1b strain MD17, complete genome | 2213 | ................... | 2231 | 100 |
| AF207760.1 | Hepatitis C virus subtype 1b strain MD19, complete genome | 2213 | ................... | 2231 | 100 |
| AF207761.1 | Hepatitis C virus subtype 1b strain MD20, complete genome | 2213 | ................... | 2231 | 100 |
| AF207763.1 | Hepatitis C virus subtype 1b strain MD22, complete genome | 2213 | ................... | 2231 | 100 |
| AF207767.1 | Hepatitis C virus subtype 1b strain MD26, complete genome | 2213 | ................... | 2231 | 100 |
| AF207772.1 | Hepatitis C virus subtype 1b strain MD31, complete genome | 2213 | ................... | 2231 | 100 |
| AF207774.1 | Hepatitis C virus subtype 1b strain MD33, complete genome | 2213 | ................... | 2231 | 100 |
| AB049088.1 | Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 | 2225 | ................... | 2243 | 100 |
| AB049091.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 2143 | ................... | 2161 | 100 |
| AB049093.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT15 | 2194 | ................... | 2212 | 100 |
| AB049095.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT16 | 2194 | ................... | 2212 | 100 |
| AB049098.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT20 | 2194 | ................... | 2212 | 100 |
| AB049100.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT21 | 2194 | ................... | 2212 | 100 |
| AF356827.1 | Hepatitis C virus subtype 1b isolate HCV-S1, complete genome | 2225 | ................... | 2243 | 100 |
| AF139594.2 | Hepatitis C virus subtype 1b strain HCV-N, complete genome | 2228 | ................... | 2246 | 100 |
| AY587844.1 | Hepatitis C virus strain N589 polyprotein gene, complete cds | 2173 | ................... | 2191 | 100 |
| AB154178.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154179.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154180.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154181.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154182.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154183.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154189.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154190.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154191.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154192.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154194.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154198.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154201.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154202.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154203.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154204.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| AB154205.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ................... | 2231 | 100 |
| DQ071885.1 | Hepatitis C virus subtype 1b polyprotein mRNA, complete cds | 2225 | ................... | 2243 | 100 |
| EF407460.1 | Hepatitis C virus isolate 8007 polyprotein gene, complete cds | 2175 | ................... | 2193 | 100 |
| EF407465.1 | Hepatitis C virus isolate 6017 polyprotein gene, complete cds | 2170 | ................... | 2188 | 100 |
| EF407470.1 | Hepatitis C virus isolate 4064 polyprotein gene, complete cds | 2177 | ................... | 2195 | 100 |
| EF407475.1 | Hepatitis C virus isolate 3009 polyprotein gene, complete cds | 2157 | ................... | 2175 | 100 |
| EF407476.1 | Hepatitis C virus isolate 3012 polyprotein gene, complete cds | 2160 | ................... | 2178 | 100 |
| EF407480.1 | Hepatitis C virus isolate 3043 polyprotein gene, complete cds | 2172 | ................... | 2190 | 100 |
| EF407483.1 | Hepatitis C virus isolate 4043 polyprotein gene, complete cds | 2200 | ................... | 2218 | 100 |
| EF407485.1 | Hepatitis C virus isolate 7026 polyprotein gene, complete cds | 2180 | ................... | 2198 | 100 |
| EF407492.1 | Hepatitis C virus isolate 7025 polyprotein gene, complete cds | 2165 | ................... | 2183 | 100 |
| EF407503.1 | Hepatitis C virus isolate 5083 polyprotein gene, complete cds | 2172 | ................... | 2190 | 100 |
| EU234061.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V126/1991, complet | 2173 | ................... | 2191 | 100 |
| EU234061.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V126/1991, complet | 1112 | _______............ | 1123 | 63 |
| EU234062.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V135/1992, complet | 2173 | ................... | 2191 | 100 |
| EU155221.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V148/2004, complet | 2173 | ................... | 2191 | 100 |
| EU155226.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V156/2004, complet | 2173 | ................... | 2191 | 100 |
| EU155227.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V157/2003, complet | 2173 | ................... | 2191 | 100 |
| EU155228.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V158/2003, complet | 2173 | ................... | 2191 | 100 |
| EU155231.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V163/2002, complet | 2173 | ................... | 2191 | 100 |
| EU155232.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V164/2002, complet | 2174 | ................... | 2192 | 100 |
| EU482833.1 | Hepatitis C virus subtype 1b isolate HCV-1b/DE/BID-V503/2003, complet | 2173 | ................... | 2191 | 100 |
| EU482839.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V370/2006, complet | 2173 | ................... | 2191 | 100 |
| EU482849.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V138/1989, complet | 2173 | ................... | 2191 | 100 |
| EU482877.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V342/2001, complet | 2179 | ................... | 2197 | 100 |
| EU482881.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V383/2003, complet | 2182 | ................... | 2200 | 100 |
| EU482885.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V448/2006, complet | 2176 | ................... | 2194 | 100 |
| EU482886.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V458/2006, complet | 2177 | ................... | 2195 | 100 |
| EU482888.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V123/1992, complet | 2176 | ................... | 2194 | 100 |
| EU155253.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V363/2006, complet | 2176 | ................... | 2194 | 100 |
| EU155257.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V369/2006, complet | 2173 | ................... | 2191 | 100 |
| EU155258.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V371/2006, complet | 2173 | ................... | 2191 | 100 |
| EU155260.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V375/2006, complet | 2173 | ................... | 2191 | 100 |
| EU155261.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V379/2005, complet | 2174 | ................... | 2192 | 100 |
| EU155262.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V381/2001, complet | 2173 | ................... | 2191 | 100 |
| EU155263.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V384/2005, complet | 2173 | ................... | 2191 | 100 |
| EU155300.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V341/2003, complet | 2172 | ................... | 2190 | 100 |
| EU155303.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V346/2001, complet | 2173 | ................... | 2191 | 100 |
| EU155304.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V347/2003, complet | 1902 | ................... | 1920 | 100 |
| EU155307.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V353/2002, complet | 2174 | ................... | 2192 | 100 |
| EU155308.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V354/2003, complet | 2173 | ................... | 2191 | 100 |
| EU155316.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V419/2002, complet | 2173 | ................... | 2191 | 100 |
| EU155317.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V420/2002, complet | 2173 | ................... | 2191 | 100 |
| EU155318.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V421/2005, complet | 2173 | ................... | 2191 | 100 |
| EU155324.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V121/1992, complet | 2173 | ................... | 2191 | 100 |
| EU155328.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V127/1992, complet | 2173 | ................... | 2191 | 100 |
| EU155329.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V128/1992, complet | 2173 | ................... | 2191 | 100 |
| EU155330.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V130/1994, complet | 2195 | ................... | 2213 | 100 |
| EU155331.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V131/1990, complet | 2173 | ................... | 2191 | 100 |
| EU155332.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V132/1996, complet | 2173 | ................... | 2191 | 100 |
| EU155334.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V134/1990, complet | 2173 | ................... | 2191 | 100 |
| EU155336.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V139/1992, complet | 2173 | ................... | 2191 | 100 |
| EU155356.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V273/2003, complet | 2173 | ................... | 2191 | 100 |
| EU155357.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V275/2003, complet | 2173 | ................... | 2191 | 100 |
| EU155358.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V276/2004, complet | 2173 | ................... | 2191 | 100 |
| EU155360.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V278/2003, complet | 2173 | ................... | 2191 | 100 |
| EU155361.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V281/2004, complet | 2173 | ................... | 2191 | 100 |
| EU155366.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V294/2002, complet | 2173 | ................... | 2191 | 100 |
| EU155368.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V296/2001, complet | 2173 | ................... | 2191 | 100 |
| EU155369.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V297/2002, complet | 2173 | ................... | 2191 | 100 |
| EU155374.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V308/2005, complet | 2195 | ................... | 2213 | 100 |
| EU155376.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V311/2006, complet | 2173 | ................... | 2191 | 100 |
| EU155377.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V313/2006, complet | 2173 | ................... | 2191 | 100 |
| EU660386.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V355/2006, complet | 2173 | ................... | 2191 | 100 |
| EU256061.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V364/2006, complet | 2173 | ................... | 2191 | 100 |
| EU256061.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V364/2006, complet | 1112 | _______............ | 1123 | 63 |
| EU256062.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V368/2006, complet | 2176 | ................... | 2194 | 100 |
| EU256064.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V376/2006, complet | 2173 | ................... | 2191 | 100 |
| EU256065.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V377/2006, complet | 2173 | ................... | 2191 | 100 |
| EU256065.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V377/2006, complet | 1111 | ______............. | 1123 | 68 |
| EU256066.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V382/2003, complet | 2174 | ................... | 2192 | 100 |
| EU256088.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V149/2003, complet | 2173 | ................... | 2191 | 100 |
| EU256092.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V463/2006, complet | 2173 | ................... | 2191 | 100 |
| EU256098.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V343/2002, complet | 2188 | ................... | 2206 | 100 |
| EU256100.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V349/2002, complet | 2173 | ................... | 2191 | 100 |
| EU256101.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V351/2002, complet | 2173 | ................... | 2191 | 100 |
| EU256102.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V415/2001, complet | 2173 | ................... | 2191 | 100 |
| EU256102.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V415/2001, complet | 1112 | _______............ | 1123 | 63 |
| EU256000.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V143/2003, complet | 2173 | ................... | 2191 | 100 |
| EU256001.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V144/2002, complet | 2173 | ................... | 2191 | 100 |
| EU256001.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V144/2002, complet | 1112 | _______............ | 1123 | 63 |
| EU256079.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V286/2005, complet | 2174 | ................... | 2192 | 100 |
| EU256080.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V292/2002, complet | 2173 | ................... | 2191 | 100 |
| EU256082.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V298/2005, complet | 2174 | ................... | 2192 | 100 |
| EU256084.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V303/2003, complet | 2179 | ................... | 2197 | 100 |
| EU255961.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V137/1991, complet | 2173 | ................... | 2191 | 100 |
| EU255962.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V140/1991, complet | 1891 | ................... | 1909 | 100 |
| EU857431.1 | Hepatitis C virus subtype 1b isolate Whu, complete genome | 2225 | ................... | 2243 | 100 |
| EU857431.1 | Hepatitis C virus subtype 1b isolate Whu, complete genome | 1164 | _______............ | 1175 | 63 |
| FJ024086.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1704/2007, comple | 2173 | ................... | 2191 | 100 |
| FJ024277.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1711/2007, comple | 2173 | ................... | 2191 | 100 |
| EU862835.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V509/2001, partial | 2172 | ................... | 2190 | 100 |
| FJ390396.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1748/2007, comple | 2173 | ................... | 2191 | 100 |
| FJ390397.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1749/2008, comple | 2173 | ................... | 2191 | 100 |
| FJ390398.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1750/2008, comple | 2173 | ................... | 2191 | 100 |
| FJ478453.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V2148/1999, comple | 2173 | ................... | 2191 | 100 |
| AB442221.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 2225 | ................... | 2243 | 100 |
| FN435993.1 | Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN | 2226 | ................... | 2244 | 100 |
| GU133617.1 | Hepatitis C virus subtype 1b, complete genome | 2225 | ................... | 2243 | 100 |
| L02836.1 | HPCCGENOM Hepatitis C virus subtype 1b strain HeBei, complete genome | 2215 | _.................. | 2232 | 94 |
| M84754.1 | HPCGENANTI Hepatitis C virus subtype 1b strain Taiwan, complete genome | 2226 | _.................. | 2243 | 94 |
| U01214.1 | HCU01214 Hepatitis C virus subtype 1b strain HCV-L2, complete genome | 2226 | .................._ | 2243 | 94 |
| AB016785.1 | Hepatitis C virus genomic RNA, complete sequence | 2230 | _.................. | 2247 | 94 |
| AB154199.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | .................._ | 2230 | 94 |
| AB154200.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | .................._ | 2230 | 94 |
| EF407431.1 | Hepatitis C virus isolate 3005 polyprotein gene, complete cds | 2123 | .................._ | 2140 | 94 |
| EU155220.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V147/2004, complet | 2160 | _.................. | 2177 | 94 |
| EU482874.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V287/2005, complet | 2176 | .................._ | 2193 | 94 |
| EU155264.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V385/2006, complet | 2152 | _.................. | 2169 | 94 |
| EU155280.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V442/2001, complet | 2174 | _.................. | 2191 | 94 |
| EU155326.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V124/1992, complet | 2173 | .................._ | 2190 | 94 |
| EU155362.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V282/2004, complet | 2174 | _.................. | 2191 | 94 |
| EU155375.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V309/2006, complet | 2173 | .................._ | 2190 | 94 |
| EU256103.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V418/2001, complet | 2171 | _.................. | 2188 | 94 |
| D90208.1 | HPCJCG Hepatitis C virus ORF gene, complete cds | 2213 | ...c............... | 2231 | 94 |
| M96362.1 | HPCUNKCDS Hepatitis C virus mRNA, complete cds | 2226 | ............c...... | 2244 | 94 |
| U16362.1 | HCU16362 Hepatitis C virus subtype 1b, complete genome | 2226 | ............c...... | 2244 | 94 |
| D63857.1 | HPVHCVN Hepatitis C virus gene for E1 and E2/NS1 envelope glycoprotein | 2132 | ...............a... | 2150 | 94 |
| U89019.1 | HCU89019 Hepatitis C virus subtype 1b, complete genome | 2219 | ...c............... | 2237 | 94 |
| AJ238799.1 | Hepatitis C virus type 1b complete genome, isolate Con1 | 2225 | ............c...... | 2243 | 94 |
| AJ238800.1 | Hepatitis C virus type 1b complete genome, isolate NC1 | 1884 | ............c...... | 1902 | 94 |
| AF165049.1 | Hepatitis C virus subtype 1b strain MD3-1, complete genome | 2213 | ...c............... | 2231 | 94 |
| AF165050.1 | Hepatitis C virus subtype 1b strain MD3-2, complete genome | 2213 | ...c............... | 2231 | 94 |
| AF165051.1 | Hepatitis C virus subtype 1b strain MD4-1, complete genome | 2213 | ...c............... | 2231 | 94 |
| AF165054.1 | Hepatitis C virus subtype 1b strain MD5-2, complete genome | 2213 | ...c............... | 2231 | 94 |
| AF165058.1 | Hepatitis C virus subtype 1b strain MD7-2, complete genome | 2213 | ...c............... | 2231 | 94 |
| AF165061.1 | Hepatitis C virus subtype 1b strain MD9-1, complete genome | 2213 | ...............a... | 2231 | 94 |
| AF165062.1 | Hepatitis C virus subtype 1b strain MD9-2, complete genome | 2213 | ...............a... | 2231 | 94 |
| AF165063.1 | Hepatitis C virus subtype 1b strain MD10-1, complete genome | 2213 | ...c............... | 2231 | 94 |
| AF165064.1 | Hepatitis C virus subtype 1b strain MD10-2, complete genome | 2213 | ...c............... | 2231 | 94 |
| AF238481.1 | Hepatitis C virus subtype 2a strain MD2a-1, complete genome | 2202 | ...g............... | 2220 | 94 |
| AF207753.1 | Hepatitis C virus subtype 1b strain MD12, complete genome | 2213 | ............c...... | 2231 | 94 |
| AF207759.1 | Hepatitis C virus subtype 1b strain MD18, complete genome | 2213 | ......a............ | 2231 | 94 |
| AF207762.1 | Hepatitis C virus subtype 1b strain MD21, complete genome | 2213 | ...............a... | 2231 | 94 |
| AF207762.1 | Hepatitis C virus subtype 1b strain MD21, complete genome | 1152 | _______............ | 1163 | 63 |
| AF207764.1 | Hepatitis C virus subtype 1b strain MD23, complete genome | 2213 | ...c............... | 2231 | 94 |
| AF207765.1 | Hepatitis C virus subtype 1b strain MD24, complete genome | 2213 | ...............a... | 2231 | 94 |
| AF207766.1 | Hepatitis C virus subtype 1b strain MD25, complete genome | 2213 | ...c............... | 2231 | 94 |
| AF207768.1 | Hepatitis C virus subtype 1b strain MD27, complete genome | 2213 | ............c...... | 2231 | 94 |
| AF207769.1 | Hepatitis C virus subtype 1b strain MD28, complete genome | 2213 | ......a............ | 2231 | 94 |
| AF207771.1 | Hepatitis C virus subtype 1b strain MD30, complete genome | 2213 | ...c............... | 2231 | 94 |
| AF207771.1 | Hepatitis C virus subtype 1b strain MD30, complete genome | 1152 | _______............ | 1163 | 63 |
| AB049089.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT10 | 2194 | ...c............... | 2212 | 94 |
| AB049090.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 2194 | ...c............... | 2212 | 94 |
| AB049096.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT19 | 2194 | ...c............... | 2212 | 94 |
| AB049097.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT19 | 2194 | ......a............ | 2212 | 94 |
| AB049097.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT19 | 1133 | _______............ | 1144 | 63 |
| AB049099.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT21 | 2228 | ...c............... | 2246 | 94 |
| AB049101.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT22 | 2194 | ...c............... | 2212 | 94 |
| AY045702.1 | Hepatitis C virus isolate HCR6, complete genome | 2227 | ...............a... | 2245 | 94 |
| AB080299.1 | Hepatitis C virus genomic RNA, complete genome, isolate:M1LE | 2225 | ...c............... | 2243 | 94 |
| AY460204.1 | Hepatitis C virus from Shanghai, complete genome | 2225 | ...............a... | 2243 | 94 |
| AB154177.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ..........a........ | 2231 | 94 |
| AB154185.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | .a................. | 2231 | 94 |
| AB154186.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | .a................. | 2231 | 94 |
| AB154187.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | ............c...... | 2231 | 94 |
| AB154206.1 | Hepatitis C virus subtype 1b gene for polyprotein, partial cds, isola | 2213 | .a................. | 2231 | 94 |
| EF638081.1 | Hepatitis C virus subtype 1b from Hubei, complete genome | 2181 | ...............a... | 2199 | 94 |
| EF407469.1 | Hepatitis C virus isolate 4014 polyprotein gene, complete cds | 2169 | ............c...... | 2187 | 94 |
| EF407471.1 | Hepatitis C virus isolate 5044 polyprotein gene, complete cds | 2170 | ............c...... | 2188 | 94 |
| EF407479.1 | Hepatitis C virus isolate 4036 polyprotein gene, complete cds | 2176 | ............c...... | 2194 | 94 |
| EF407482.1 | Hepatitis C virus isolate 6053 polyprotein gene, complete cds | 2110 | ...c............... | 2128 | 94 |
| EF407487.1 | Hepatitis C virus isolate 6057 polyprotein gene, complete cds | 2172 | ...c............... | 2190 | 94 |
| EF407493.1 | Hepatitis C virus isolate 3031 polyprotein gene, complete cds | 2180 | ...c............... | 2198 | 94 |
| EF407497.1 | Hepatitis C virus isolate 5002 polyprotein gene, complete cds | 2169 | ...............a... | 2187 | 94 |
| EF407501.1 | Hepatitis C virus isolate 7055 polyprotein gene, complete cds | 2198 | ...............a... | 2216 | 94 |
| EU155218.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V145/2005, complet | 2174 | ...c............... | 2192 | 94 |
| EU155219.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V146/2002, complet | 2173 | .a................. | 2191 | 94 |
| EU155222.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V150/2004, complet | 2173 | ...c............... | 2191 | 94 |
| EU155223.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V151/2002, complet | 2179 | ...............a... | 2197 | 94 |
| EU155224.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V152/2003, complet | 2173 | ......a............ | 2191 | 94 |
| EU155225.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V155/2003, complet | 2174 | ............c...... | 2192 | 94 |
| EU155229.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V159/2004, complet | 2173 | ...............a... | 2191 | 94 |
| EU155234.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V447/2006, complet | 2174 | ....c.............. | 2192 | 94 |
| EU155235.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V449/2006, complet | 2173 | ...............a... | 2191 | 94 |
| EU482841.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V387/2004, complet | 2158 | ...c............... | 2176 | 94 |
| EU482859.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V272/2003, complet | 2173 | ....c.............. | 2191 | 94 |
| EU482875.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V310/2005, complet | 2173 | ...............a... | 2191 | 94 |
| EU482879.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V372/2006, complet | 2176 | ...c............... | 2194 | 94 |
| EU482879.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V372/2006, complet | 1112 | _______............ | 1123 | 63 |
| EU482880.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V373/2006, complet | 2176 | ...c............... | 2194 | 94 |
| EU482880.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V373/2006, complet | 1112 | _______............ | 1123 | 63 |
| EU482883.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V153/2005, complet | 2179 | ...c............... | 2197 | 94 |
| EU155256.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V367/2006, complet | 2173 | ...c............... | 2191 | 94 |
| EU155259.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V374/2006, complet | 2173 | ...c............... | 2191 | 94 |
| EU155279.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V441/2001, complet | 2173 | .a................. | 2191 | 94 |
| EU155281.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V512/2005, complet | 2173 | .a................. | 2191 | 94 |
| EU155302.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V345/2001, complet | 2173 | .................a. | 2191 | 94 |
| EU155305.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V350/2002, complet | 2173 | ............c...... | 2191 | 94 |
| EU155306.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V352/2002, complet | 2173 | ......a............ | 2191 | 94 |
| EU155327.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V125/1992, complet | 2163 | ......a............ | 2181 | 94 |
| EU155333.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V133/1989, complet | 2162 | ...c............... | 2180 | 94 |
| EU155337.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V141/1990, complet | 2173 | ...c............... | 2191 | 94 |
| EU155363.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V285/2005, complet | 2173 | ......a............ | 2191 | 94 |
| EU155364.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V288/2006, complet | 2173 | ...g............... | 2191 | 94 |
| EU155365.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V289/2006, complet | 2173 | ...c............... | 2191 | 94 |
| EU155367.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V295/2002, complet | 2173 | ...c............... | 2191 | 94 |
| EU155370.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V300/2005, complet | 2173 | ...c............... | 2191 | 94 |
| EU155371.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V301/2005, complet | 2170 | ...c............... | 2188 | 94 |
| EU155381.2 | Hepatitis C virus subtype 1b isolate HCV-1b/DE/BID-V502/2004, complet | 2173 | ............c...... | 2191 | 94 |
| EU660388.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V154/2001, complet | 2174 | ......a............ | 2192 | 94 |
| EU255960.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V312/2006, complet | 2173 | ...c............... | 2191 | 94 |
| EU256059.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V220/2005, complet | 2173 | ......a............ | 2191 | 94 |
| EU256089.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V161/2002, complet | 2173 | ...c............... | 2191 | 94 |
| EU256090.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V162/2002, complet | 2173 | ...c............... | 2191 | 94 |
| EU256091.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V455/2006, complet | 1891 | ...g............... | 1909 | 94 |
| EU256099.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V348/2002, complet | 2173 | ............c...... | 2191 | 94 |
| EU256045.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V380/2003, complet | 2173 | ...c............... | 2191 | 94 |
| EU256054.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V443/2001, complet | 2173 | ............c...... | 2191 | 94 |
| EU256058.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V8/2005, complete | 2137 | ...c............... | 2155 | 94 |
| EU256076.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V280/2004, complet | 2173 | ......a............ | 2191 | 94 |
| EU256078.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V284/2005, complet | 2175 | .a................. | 2193 | 94 |
| EU256081.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V293/2002, complet | 2173 | ...............a... | 2191 | 94 |
| EU256083.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V299/2005, complet | 2173 | ...c............... | 2191 | 94 |
| EU256085.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V305/2003, complet | 2173 | ...c............... | 2191 | 94 |
| AB442219.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 2225 | ...c............... | 2243 | 94 |
| AB442219.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 1164 | _______............ | 1175 | 63 |
| AB442220.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 2225 | ...c............... | 2243 | 94 |
| EU862837.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V304/2004, complet | 2180 | ...c............... | 2198 | 94 |
| EU255967.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V171/1997, complet | 2132 | __................. | 2148 | 89 |
| AB049087.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT05 | 2195 | _..c............... | 2212 | 89 |
| DQ418786.1 | Hepatitis C virus subtype 4d isolate 03-18 polyprotein gene, complete | 2115 | ...............c.._ | 2132 | 89 |
| EF032892.1 | Hepatitis C virus subtype 1b isolate BR1427_P1_10.7.03 polyprotein ge | 2202 | _..............a... | 2219 | 89 |
| EF032893.1 | Hepatitis C virus subtype 1b isolate BR1427_P3_11.10.03 polyprotein g | 2200 | _..............a... | 2217 | 89 |
| EF407504.1 | Hepatitis C virus isolate 8069 polyprotein gene, complete cds | 2179 | ...c.............._ | 2196 | 89 |
| EU155230.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V160/2002, complet | 2174 | _..c............... | 2191 | 89 |
| EU155237.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V457/2006, complet | 2167 | _..c............... | 2184 | 89 |
| EU482847.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V5/2004, complete | 2143 | _..c............... | 2160 | 89 |
| EU155268.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V396/2006, complet | 2120 | ...c.............._ | 2137 | 89 |
| EU155272.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V404/2006, complet | 2122 | _..c............... | 2139 | 89 |
| EU155295.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V331/2002, complet | 2144 | ...c.............._ | 2161 | 89 |
| EU155335.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V136/1992, complet | 2173 | ...c.............._ | 2190 | 89 |
| EU529681.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V251/2005, complet | 2141 | ............c....._ | 2158 | 89 |
| EU256004.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V45/2005, complete | 2132 | ............c....._ | 2149 | 89 |
| EU256005.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V451/2006, complet | 2153 | ...c.............._ | 2170 | 89 |
| EU256019.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V61/2001, complete | 2148 | _..c............... | 2165 | 89 |
| EU256072.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V238/2005, complet | 2132 | ...c.............._ | 2149 | 89 |
| EU255976.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V184/1992, complet | 2147 | _..c............... | 2164 | 89 |
| GQ149768.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V2147/2002, comple | 2136 | ...c.............._ | 2153 | 89 |
| X61596.1 | Hepatitis C virus core, E1, NS1/E2, NS2, NS3, NS4a, NS4b and NS5 gene | 2208 | .a.c............... | 2226 | 89 |
| AF165052.1 | Hepatitis C virus subtype 1b strain MD4-2, complete genome | 2213 | ...c...........a... | 2231 | 89 |
| AF169002.1 | Hepatitis C virus subtype 2a isolate NDM228, complete genome | 2236 | .a.a............... | 2254 | 89 |
| AF169004.1 | Hepatitis C virus subtype 2a isolate G2aK3, complete genome | 2236 | .a.a............... | 2254 | 89 |
| AF169005.1 | Hepatitis C virus subtype 2a isolate NDM59, complete genome | 2236 | .a.a............... | 2254 | 89 |
| AF238482.1 | Hepatitis C virus subtype 2a strain MD2a-2, complete genome | 2202 | .a.a............... | 2220 | 89 |
| AF238483.1 | Hepatitis C virus subtype 2a strain MD2a-4, complete genome | 2202 | .a.a............... | 2220 | 89 |
| AF238484.1 | Hepatitis C virus subtype 2a strain MD2a-5, complete genome | 2202 | .a.a............... | 2220 | 89 |
| AF207770.1 | Hepatitis C virus subtype 1b strain MD29, complete genome | 2213 | ...c...........a... | 2231 | 89 |
| AB047640.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 | 2236 | .a.c............... | 2254 | 89 |
| AB047642.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 | 2236 | .a.a............... | 2254 | 89 |
| AB191333.1 | Hepatitis C virus genomic RNA, complete genome, strain:0 | 2225 | ...c...........a... | 2243 | 89 |
| EF407461.1 | Hepatitis C virus isolate 5004 polyprotein gene, complete cds | 2205 | .a.c............... | 2223 | 89 |
| EF407472.1 | Hepatitis C virus isolate 4034 polyprotein gene, complete cds | 2171 | .a.c............... | 2189 | 89 |
| EF407502.1 | Hepatitis C virus isolate 2038 polyprotein gene, complete cds | 2254 | ...c...........a... | 2272 | 89 |
| EU239714.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V417/2001, complet | 2174 | .a.c............... | 2192 | 89 |
| EU155217.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V142/2004, complet | 2173 | .a.c............... | 2191 | 89 |
| EU482860.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V302/2003, complet | 2173 | .a.c............... | 2191 | 89 |
| EU155254.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V365/2006, complet | 2174 | ...c...........a... | 2192 | 89 |
| EU155255.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V366/2006, complet | 2179 | .a.c............... | 2197 | 89 |
| EU155315.2 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V416/2001, complet | 2173 | .a.............a... | 2191 | 89 |
| EU529682.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V291/2002, complet | 1891 | .a.c............... | 1909 | 89 |
| AB429050.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: AH1 | 2225 | .a.c............... | 2243 | 89 |
| EU256075.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V279/2004, complet | 2173 | ............c..a... | 2191 | 89 |
| FJ024279.1 | Hepatitis C virus subtype 1b isolate HCV-1b/US/BID-V1715/2007, comple | 2173 | ...c...........a... | 2191 | 89 |
| AB559564.1 | Hepatitis C virus HCV gene for hepatitis C virus polyprotein, complet | 2237 | ...ac.............. | 2255 | 89 |
| D10749.1 | HPCHCJ1 Hepatitis C virus genomic RNA, complete genome, isolate: HC-J1 | 2226 | _...........c....._ | 2242 | 84 |
| D00944.1 | HPCPOLP Hepatitis C virus genomic RNA for polyprotein, complete cds | 2238 | __.a............... | 2254 | 84 |
| D50482.1 | HPCK1R3 Hepatitis C virus (strain HCV-1b, clone HCV-K1-R3), complete g | 2215 | __.c............... | 2231 | 84 |
| D50482.1 | HPCK1R3 Hepatitis C virus (strain HCV-1b, clone HCV-K1-R3), complete g | 1151 | ______............. | 1163 | 68 |
| D50484.1 | HPCK1S3 Hepatitis C virus (strain HCV-1b, clone HCV-K1-S3), complete g | 2215 | __.c............... | 2231 | 84 |
| D50484.1 | HPCK1S3 Hepatitis C virus (strain HCV-1b, clone HCV-K1-S3), complete g | 1152 | _______............ | 1163 | 63 |
| AB047641.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 | 2238 | __.a............... | 2254 | 84 |
| AY746460.1 | Hepatitis C virus genotype 2a polyprotein gene, complete cds | 2241 | __.a............... | 2257 | 84 |
| EF407421.1 | Hepatitis C virus isolate 8030 polyprotein gene, complete cds | 2129 | _..c.............._ | 2145 | 84 |
| EF407428.1 | Hepatitis C virus isolate 1024 polyprotein gene, complete cds | 2132 | _..c.............._ | 2148 | 84 |
| EF407432.1 | Hepatitis C virus isolate 1013 polyprotein gene, complete cds | 2187 | _..c.............._ | 2203 | 84 |
| EF407440.1 | Hepatitis C virus isolate 7002 polyprotein gene, complete cds | 2174 | _..c.............._ | 2190 | 84 |
| EF407443.1 | Hepatitis C virus isolate 7024 polyprotein gene, complete cds | 2186 | _..c.............._ | 2202 | 84 |
| EU155379.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V29/2003, complete | 2122 | _..c.............._ | 2138 | 84 |
| EU362877.1 | Hepatitis C virus isolate 1024_FU24 polyprotein (pol) gene, complete | 2131 | _..c.............._ | 2147 | 84 |
| EU362878.1 | Hepatitis C virus isolate 1030_FU24 polyprotein (pol) gene, partial c | 2186 | _..c.............._ | 2202 | 84 |
| EU362899.1 | Hepatitis C virus isolate 1013q polyprotein (pol) gene, partial cds | 2187 | _..c.............._ | 2203 | 84 |
| EU362907.1 | Hepatitis C virus isolate 7002q polyprotein (pol) gene, complete cds | 2174 | _..c.............._ | 2190 | 84 |
| EU155233.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V445/2006, complet | 2153 | _..c.............._ | 2169 | 84 |
| EU155238.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V465/2007, complet | 2152 | _..c.............._ | 2168 | 84 |
| EU482842.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V389/2006, complet | 2131 | _..c.............._ | 2147 | 84 |
| EU482844.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V436/2006, complet | 2160 | _...........c....._ | 2176 | 84 |
| EU482853.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V227/2005, complet | 2145 | _..c.............._ | 2161 | 84 |
| EU482865.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V46/2003, complete | 2132 | _...........c....._ | 2148 | 84 |
| EU482869.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V70/2002, complete | 2143 | _............c...._ | 2159 | 84 |
| EU155267.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V391/2006, complet | 2132 | _..c.............._ | 2148 | 84 |
| EU155290.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V325/2001, complet | 2131 | _..c.............._ | 2147 | 84 |
| EU155351.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V257/2003, complet | 2147 | _..c.............._ | 2163 | 84 |
| EU529676.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V39/2004, complete | 2158 | _..c.............._ | 2174 | 84 |
| EU255933.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V112/2003, complet | 2134 | _..c.............._ | 2150 | 84 |
| EU255939.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V408/2006, complet | 2145 | _..c.............._ | 2161 | 84 |
| EU255942.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V699/2007, complet | 2158 | _..c.............._ | 2174 | 84 |
| EU255945.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V225/2004, complet | 2145 | _..c.............._ | 2161 | 84 |
| EU255952.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V247/2005, complet | 2147 | _..c.............._ | 2163 | 84 |
| EU155347.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V239/2005, complet | 2137 | _..c.............._ | 2153 | 84 |
| EU255997.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V109/2003, complet | 2123 | _..c.............._ | 2139 | 84 |
| EU256007.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V464/2006, complet | 2142 | _..c.............._ | 2158 | 84 |
| EU256009.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V49/2004, complete | 2139 | _..c.............._ | 2155 | 84 |
| EU256027.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V83/2003, complete | 2165 | _..c.............._ | 2181 | 84 |
| EU256041.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V2/2005, complete | 2157 | _..c.............._ | 2173 | 84 |
| EU255970.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V176/1992, complet | 2144 | _...........c....._ | 2160 | 84 |
| EU255990.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V209/1992, complet | 2151 | _..c.............._ | 2167 | 84 |
| EU255991.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V210/1989, complet | 2141 | _..c.............._ | 2157 | 84 |
| FJ182000.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1712/2007, comple | 2120 | _..c.............._ | 2136 | 84 |
| FJ205869.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1720/2006, comple | 2120 | _..c.............._ | 2136 | 84 |
| AF207773.1 | Hepatitis C virus subtype 1b strain MD32, complete genome | 2213 | .a.c.............._ | 2230 | 84 |
| AY232738.1 | Hepatitis C virus clone MD2b5-1 polyprotein mRNA, complete cds | 2200 | ...gc............._ | 2217 | 84 |
| EF407439.1 | Hepatitis C virus isolate 8003 polyprotein gene, complete cds | 2170 | ...c..a..........._ | 2187 | 84 |
| EU155292.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V327/2001, complet | 2153 | _..c..a............ | 2170 | 84 |
| EU155382.2 | Hepatitis C virus subtype 1b isolate HCV-1b/DE/BID-V504/2003, complet | 2179 | ...c..a..........._ | 2196 | 84 |
| AM910652.2 | Hepatitis C virus subtype 1g complete genome | 2209 | .a.c.............._ | 2226 | 84 |
| EU862824.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V31/2004, partial | 2142 | .a..........c....._ | 2159 | 84 |
| FJ390394.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1745/2008, comple | 2135 | ............cc...._ | 2152 | 84 |
| FJ462434.1 | Hepatitis C virus isolate QC262, complete genome | 2222 | ...c...........c.._ | 2239 | 84 |
| FJ462440.1 | Hepatitis C virus isolate QC93, complete genome | 2225 | ...c..a..........._ | 2242 | 84 |
| FJ462441.1 | Hepatitis C virus isolate QC97, complete genome | 2227 | .a.c.............._ | 2244 | 84 |
| AF271632.1 | Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome | 2227 | __..........c....._ | 2242 | 78 |
| EF407437.1 | Hepatitis C virus isolate 1030 polyprotein gene, complete cds | 2187 | __.c.............._ | 2202 | 78 |
| EF407451.1 | Hepatitis C virus isolate 7041 polyprotein gene, complete cds | 2150 | __.c.............._ | 2165 | 78 |
| EU362894.1 | Hepatitis C virus isolate 7041_FU24 polyprotein (pol) gene, partial c | 2124 | __.c.............._ | 2139 | 78 |
| EU362900.1 | Hepatitis C virus isolate 1030q polyprotein (pol) gene, partial cds | 2187 | __.c.............._ | 2202 | 78 |
| EU155242.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V73/2004, complete | 2144 | __..........c....._ | 2159 | 78 |
| AF177036.1 | Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen | 2238 | __.a.............._ | 2253 | 78 |
| AF238485.1 | Hepatitis C virus subtype 2a strain MD2a-7, complete genome | 2202 | .a.a...........a... | 2220 | 84 |
| AF238486.1 | Hepatitis C virus subtype 2b strain MD2b-1, complete genome | 2200 | ...gc..........a... | 2218 | 84 |
| AB030907.1 | Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome | 2237 | ...gc..........a... | 2255 | 84 |
| AB047645.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 | 2233 | .a.a..a............ | 2251 | 84 |
| AY232730.1 | Hepatitis C virus clone MD2b1-1 polyprotein mRNA, complete cds | 2200 | ...gc..........a... | 2218 | 84 |
| AY232731.1 | Hepatitis C virus clone MD2b1-2 polyprotein mRNA, complete cds | 2200 | ...gc..........a... | 2218 | 84 |
| AY232734.1 | Hepatitis C virus clone MD2b3-1 polyprotein mRNA, complete cds | 2200 | ...gc..........a... | 2218 | 84 |
| AY232735.1 | Hepatitis C virus clone MD2b3-2 polyprotein mRNA, complete cds | 2200 | ...gc..........a... | 2218 | 84 |
| AY232739.1 | Hepatitis C virus clone MD2b5-2 polyprotein mRNA, complete cds | 2200 | ...gc..........a... | 2218 | 84 |
| AY232740.1 | Hepatitis C virus clone MD2b6-1 polyprotein mRNA, complete cds | 2200 | ...gc..........a... | 2218 | 84 |
| AY232741.1 | Hepatitis C virus clone MD2b6-2 polyprotein mRNA, complete cds | 2200 | ...gc..........a... | 2218 | 84 |
| AY232742.1 | Hepatitis C virus clone MD2b7-1 polyprotein mRNA, complete cds | 2200 | ...gc..........a... | 2218 | 84 |
| AY232744.1 | Hepatitis C virus clone MD2b8-1 polyprotein mRNA, complete cds | 2200 | ...ac..........a... | 2218 | 84 |
| AY232746.1 | Hepatitis C virus clone MD2b9-1 polyprotein mRNA, complete cds | 2200 | ...gc..........a... | 2218 | 84 |
| AY232747.1 | Hepatitis C virus clone MD2b9-2 polyprotein mRNA, complete cds | 2200 | ...gc..........a... | 2218 | 84 |
| AY232748.1 | Hepatitis C virus clone MD2b10-1 polyprotein mRNA, complete cds | 2200 | ...gc..........a... | 2218 | 84 |
| AY232749.1 | Hepatitis C virus clone MD2b10-2 polyprotein mRNA, complete cds | 2200 | ...gc..........a... | 2218 | 84 |
| EU155372.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V306/2004, complet | 2173 | .a.c...........a... | 2191 | 84 |
| EU155373.2 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V307/2005, complet | 2173 | .a.c...........a... | 2191 | 84 |
| DQ314806.1 | Hepatitis C virus subtype 6g isolate HK6554, complete genome | 2234 | ...cc............__ | 2250 | 78 |
| EF424628.1 | Hepatitis C virus subtype 6l isolate 537796, complete genome | 2228 | ...gc............__ | 2244 | 78 |
| EF407417.1 | Hepatitis C virus isolate 4040 polyprotein gene, complete cds | 2185 | _..c..a..........._ | 2201 | 78 |
| EU246933.1 | Hepatitis C virus strain D33 polyprotein gene, complete cds | 2203 | ...gc............__ | 2219 | 78 |
| AY232745.1 | Hepatitis C virus clone MD2b8-2 polyprotein mRNA, complete cds | 2201 | _..ac..........a... | 2218 | 78 |
| EF407414.1 | Hepatitis C virus isolate 7018 polyprotein gene, complete cds | 2128 | .a.c...........a.._ | 2145 | 78 |
| EU643835.1 | Hepatitis C virus isolate HCV-6-D177 polyprotein gene, complete cds | 1961 | ...gc..........a.._ | 1978 | 78 |
| FJ462432.1 | Hepatitis C virus isolate QC193, complete genome | 2216 | .a.c...........t.._ | 2233 | 78 |
| FJ462436.1 | Hepatitis C virus isolate QC381, complete genome | 2224 | .a.c...........t.._ | 2241 | 78 |
| FJ462437.1 | Hepatitis C virus isolate QC382, complete genome | 2221 | .a.c...........c.._ | 2238 | 78 |
| FJ462438.1 | Hepatitis C virus isolate QC383, complete genome | 2225 | .a.c...........t.._ | 2242 | 78 |
| EU255951.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V245/2005, complet | 2159 | __.c...........a.._ | 2174 | 73 |
| EU255994.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V103/2005, complet | 2137 | __.c...........a.._ | 2152 | 73 |
| FN666428.2 | Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol | 2211 | __.a..a..........._ | 2226 | 73 |
| DQ988077.1 | Hepatitis C virus isolate Eg9 polyprotein gene, partial cds | 1094 | _____............t. | 1107 | 68 |
| HM777359.1 | Hepatitis C virus isolate C1292 genotype 2j, complete genome | 2161 | _____..........a... | 2174 | 68 |
| AF207757.1 | Hepatitis C virus subtype 1b strain MD16, complete genome | 1152 | _______............ | 1163 | 63 |
| EU256077.1 | Hepatitis C virus subtype 1b isolate HCV-1b/CH/BID-V283/2005, complet | 1112 | _______............ | 1123 | 63 |