../../tmp/servers/virsirnadb/1081801489
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1434 | 1 | gtcagctcaatcatgtagc | 19 | |
| NC_004281.1 | Mammalian orthoreovirus 3 segment M3, complete sequence | 1683 | ................... | 1701 | 100 |
| AF174384.1 | Reovirus 3 major nonstructural protein mu-NS gene, complete cds | 1686 | ................... | 1704 | 100 |
| EF494440.1 | Mammalian orthoreovirus 3 strain T3D segment M3, complete sequence | 1686 | ................... | 1704 | 100 |
| GU589582.1 | Mammalian orthoreovirus 3 strain Abney segment M3, complete sequence | 1686 | ................... | 1704 | 100 |
| GU589582.1 | Mammalian orthoreovirus 3 strain Abney segment M3, complete sequence | 1647 | ___........._______ | 1655 | 47 |
| HM159618.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment M3, complete seq | 1686 | ................... | 1704 | 100 |
| GU991664.1 | Mammalian orthoreovirus 3 isolate R124 segment M3, complete sequence | 1686 | ................... | 1704 | 100 |
| GU991674.1 | Mammalian orthoreovirus 3 isolate Q2R segment M3, complete sequence | 1686 | ................... | 1704 | 100 |
| NC_004281.1 | Mammalian orthoreovirus 3 segment M3, complete sequence | 1683 | ................... | 1701 | 100 |
| NC_013230.1 | Mammalian orthoreovirus 3 segment M3, complete genome | 1687 | _..g.............._ | 1703 | 84 |
| DQ403254.1 | Mammalian orthoreovirus strain SC-A segment M3 mu-NS protein gene, co | 1687 | _..g.............._ | 1703 | 84 |
| GU196314.1 | Mammalian orthoreovirus 2 segment M3 uNS protein gene, complete cds | 1676 | _..g.............._ | 1692 | 84 |
| NC_004283.1 | Mammalian orthoreovirus 3 segment S3, complete sequence | 572 | ___...gt.........__ | 559 | 63 |
| NC_004283.1 | Mammalian orthoreovirus 3 segment S3, complete sequence | 572 | ___...gt.........__ | 559 | 63 |
| EF494443.1 | Mammalian orthoreovirus 3 strain T3D segment S3, complete sequence | 572 | ___...gt.........__ | 559 | 63 |
| GU589585.1 | Mammalian orthoreovirus 3 strain Abney segment S3, complete sequence | 572 | ___...gt.........__ | 559 | 63 |
| HM159621.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment S3, complete seq | 572 | ___...gt.........__ | 559 | 63 |
| GU991667.1 | Mammalian orthoreovirus 3 isolate R124 segment S3, complete sequence | 572 | ___...gt.........__ | 559 | 63 |
| GU991677.1 | Mammalian orthoreovirus 3 isolate Q2R segment S3, complete sequence | 572 | ___...gt.........__ | 559 | 63 |
| M18389.1 | REOS3NSA Reovirus serotype 1 segment S3 nonstructural protein (sigma-N | 567 | ________.........._ | 558 | 52 |
| GU196312.1 | Mammalian orthoreovirus 2 segment S3 nonstructural protein gene, comp | 565 | ________.........._ | 556 | 52 |
| HQ642777.1 | Mammalian orthoreovirus strain MRV-HLJ/2007 sigma-NS protein gene, co | 540 | ________.........._ | 531 | 52 |
| GU196308.1 | Mammalian orthoreovirus 2 segment L3 lambda-1 protein gene, complete | 2296 | .........t.gg..a.__ | 2280 | 68 |
| GU196308.1 | Mammalian orthoreovirus 2 segment L3 lambda-1 protein gene, complete | 3103 | ______.........a.__ | 3113 | 52 |
| DQ664188.1 | Mammalian orthoreovirus 2 isolate BYD1 segment M2, complete sequence | 1651 | ______.........c.t. | 1639 | 57 |
| NC_013233.1 | Mammalian orthoreovirus 3 segment S3, complete genome | 567 | ________.........__ | 559 | 47 |
| NC_013234.1 | Mammalian orthoreovirus 3 segment S4, complete genome | 524 | ______.........____ | 516 | 47 |
| NC_004276.1 | Mammalian orthoreovirus 3 segment S4, complete sequence | 937 | ______.........____ | 945 | 47 |
| X61586.1 | Reovirus type 1 S4 RNA encoding sigma 3 | 937 | ______.........____ | 945 | 47 |
| AF332135.1 | Orthoreovirus 3 Dearing-derived E64-adapted 1 (D-EA1) sigma 3 gene, c | 937 | ______.........____ | 945 | 47 |
| AF332136.1 | Orthoreovirus 3 Dearing-derived E64-adapted 2 (D-EA2) sigma 3 gene, c | 937 | ______.........____ | 945 | 47 |
| AF332137.1 | Orthoreovirus 3 Dearing-derived E64-adapted 3 (D-EA3) sigma 3 gene, c | 937 | ______.........____ | 945 | 47 |
| DQ004470.1 | Mammalian orthoreovirus 3 isolate ACA-D1 outer-capsid protein sigma 3 | 937 | ______.........____ | 945 | 47 |
| DQ004471.1 | Mammalian orthoreovirus 3 isolate ACA-D2 outer-capsid protein sigma 3 | 937 | ______.........____ | 945 | 47 |
| DQ004472.1 | Mammalian orthoreovirus 3 isolate ACA-D3 outer-capsid protein sigma 3 | 937 | ______.........____ | 945 | 47 |
| DQ004473.1 | Mammalian orthoreovirus 3 isolate ACA-D4 outer-capsid protein sigma 3 | 937 | ______.........____ | 945 | 47 |
| DQ004474.1 | Mammalian orthoreovirus 3 isolate ACA-D5 outer-capsid protein sigma 3 | 937 | ______.........____ | 945 | 47 |
| DQ004475.1 | Mammalian orthoreovirus 3 isolate ACA-D6 outer-capsid protein sigma 3 | 937 | ______.........____ | 945 | 47 |
| EF494444.1 | Mammalian orthoreovirus 3 strain T3D segment S4, complete sequence | 937 | ______.........____ | 945 | 47 |
| GU589586.1 | Mammalian orthoreovirus 3 strain Abney segment S4, complete sequence | 937 | ______.........____ | 945 | 47 |
| HM159622.1 | Mammalian orthoreovirus 3 Dearing strain T3D segment S4, complete seq | 937 | ______.........____ | 945 | 47 |
| GU991668.1 | Mammalian orthoreovirus 3 isolate R124 segment S4, complete sequence | 937 | ______.........____ | 945 | 47 |
| GU991678.1 | Mammalian orthoreovirus 3 isolate Q2R segment S4, complete sequence | 937 | ______.........____ | 945 | 47 |
| NC_004276.1 | Mammalian orthoreovirus 3 segment S4, complete sequence | 937 | ______.........____ | 945 | 47 |