VIRsiRNAdb

../../tmp/servers/virsirnadb/1308610018
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi2026	1	`gtgcacacaatccagtgtg`	19
L24917.1	HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS	480	`...................`	498	100
L24917.1	HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS	2325	`___....a.........__`	2338	68
L24917.1	HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS	1036	`______..t..........`	1024	63
L24917.1	HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS	1951	`__..t.c.tg.........`	1935	68
FJ445113.1	Human rhinovirus 8 strain ATCC VR-1118, complete genome	476	`...................`	494	100
FJ445139.1	Human rhinovirus 54 isolate F05, complete genome	477	`...................`	495	100
EF582386.1	Human rhinovirus C strain 025, complete genome	483	`_..................`	500	94
NC_009996.1	Human rhinovirus C, complete genome	484	`_..................`	501	94
NC_009996.1	Human rhinovirus C, complete genome	2823	`_..a..c..........__`	2808	73
AY751783.1	Human rhinovirus 39, complete genome	482	`_..................`	499	94
FJ445170.1	Human rhinovirus 95 strain ATCC VR-1301, complete genome	477	`_..................`	494	94
FJ445170.1	Human rhinovirus 95 strain ATCC VR-1301, complete genome	1929	`_______..g.........`	1918	57
DQ473497.1	Human rhinovirus 23, complete genome	401	`.a.................`	419	94
DQ473506.1	Human rhinovirus 46, complete genome	479	`..........a........`	497	94
DQ473506.1	Human rhinovirus 46, complete genome	2319	`_.a.c..a.........__`	2334	68
DQ473512.1	Human rhinovirus 30, complete genome	477	`.g.................`	495	94
FJ445127.1	Human rhinovirus 32 strain ATCC VR-1142, complete genome	476	`.g.................`	494	94
FJ445127.1	Human rhinovirus 32 strain ATCC VR-1142, complete genome	5242	`____..c.........___`	5231	57
FJ445133.1	Human rhinovirus 47 strain ATCC VR-1157, complete genome	479	`.....t.............`	497	94
FJ445138.1	Human rhinovirus 54 strain ATCC VR-1164, complete genome	478	`.....t.............`	496	94
FJ445140.1	Human rhinovirus 56 strain ATCC VR-1166, complete genome	477	`..........a........`	495	94
FJ445157.1	Human rhinovirus 81 strain ATCC VR-1191, complete genome	481	`..........a........`	499	94
FJ445158.1	Human rhinovirus 81 isolate F06, complete genome	481	`..........a........`	499	94
FJ445159.1	Human rhinovirus 81 isolate F07, complete genome	481	`..........a........`	499	94
FJ445173.1	Human rhinovirus 98 strain ATCC VR-1298, complete genome	477	`..........a........`	495	94
FJ445177.1	Human rhinovirus 9 strain ATCC VR-489, complete genome	477	`.g.................`	495	94
FJ445177.1	Human rhinovirus 9 strain ATCC VR-489, complete genome	2314	`___.c..a.........__`	2327	63
FJ445177.1	Human rhinovirus 9 strain ATCC VR-489, complete genome	1512	`_______..........__`	1521	52
FJ445179.1	Human rhinovirus 30 strain ATCC VR-1140, complete genome	471	`.g.................`	489	94
GQ415051.1	Human rhinovirus A isolate hrv-A101, complete genome	485	`_.........a........`	502	89
GQ415051.1	Human rhinovirus A isolate hrv-A101, complete genome	3332	`______...t.........`	3344	63
FJ445118.1	Human rhinovirus 18 strain ATCC VR-1128, complete genome	479	`.g...t.............`	497	89
DQ473508.1	Human rhinovirus 28, complete genome	486	`_..t.............._`	502	84
EF173419.1	Human rhinovirus 94, complete genome	480	`_...t............a.`	497	84
EF173419.1	Human rhinovirus 94, complete genome	1223	`.........._________`	1232	52
FJ445117.1	Human rhinovirus 13 isolate F03, complete genome	484	`_...c............g.`	501	84
FJ445117.1	Human rhinovirus 13 isolate F03, complete genome	5253	`_____.c..........__`	5242	57
FJ445119.1	Human rhinovirus 19 strain ATCC VR-1129, complete genome	481	`_...t............a.`	498	84
FJ445119.1	Human rhinovirus 19 strain ATCC VR-1129, complete genome	1935	`_______..g.........`	1924	57
FJ445122.1	Human rhinovirus 22 strain ATCC VR-1132, complete genome	480	`_...t............a.`	497	84
FJ445185.1	Human rhinovirus 94 strain ATCC VR-1295, complete genome	480	`_...t............a.`	497	84
FJ445185.1	Human rhinovirus 94 strain ATCC VR-1295, complete genome	1223	`.........._________`	1232	52
DQ473489.1	Human rhinovirus 70, complete genome	492	`____.............._`	505	73
EF173420.1	Human rhinovirus 17, complete genome	492	`____.............._`	505	73
FJ445168.1	Human rhinovirus 91 strain ATCC VR-1292, complete genome	492	`____.............._`	505	73
FJ445143.1	Human rhinovirus 60 strain ATCC VR-1473, complete genome	479	`.....tg.........a..`	497	84
FJ445150.1	Human rhinovirus 68 strain ATCC VR-1178, complete genome	485	`...tg............__`	501	78
FJ445169.1	Human rhinovirus 92 strain ATCC VR-1293, complete genome	498	`_____............._`	510	68
DQ473493.1	Human rhinovirus 15, complete genome	481	`_____............._`	493	68
DQ473493.1	Human rhinovirus 15, complete genome	1944	`__..t.c.tg.........`	1928	68
DQ473509.1	Human rhinovirus A, complete genome	487	`_.a.t............a.`	504	78
FJ445160.1	Human rhinovirus 82 strain ATCC VR-1192, complete genome	481	`_.a.t............a.`	498	78
DQ473504.1	Human rhinovirus 88, complete genome	487	`_.a.t............__`	502	73
FJ445135.1	Human rhinovirus 50 strain ATCC VR-517, complete genome	2302	`_..a...a.........__`	2317	73
FJ445135.1	Human rhinovirus 50 strain ATCC VR-517, complete genome	1925	`_______..g.........`	1914	57
EF173418.1	Human rhinovirus 78, complete genome	2331	`___....a.........__`	2344	68
EF173418.1	Human rhinovirus 78, complete genome	3359	`_..........g..c.___`	3373	68
FJ445167.1	Human rhinovirus 90 strain ATCC VR-1291, complete genome	2316	`___....a.........__`	2329	68
FJ445183.1	Human rhinovirus 78 strain ATCC VR-1188, complete genome	2331	`___....a.........__`	2344	68
FJ445183.1	Human rhinovirus 78 strain ATCC VR-1188, complete genome	3359	`_..........g..c.___`	3373	68
DQ473488.1	Human rhinovirus 48, complete genome	497	`_____............__`	508	63
FJ445153.1	Human rhinovirus 72 strain ATCC VR-1182, complete genome	502	`_____............__`	513	63
DQ473494.1	Human rhinovirus 74, complete genome	482	`_____............__`	493	63
DQ473510.1	Human rhinovirus 75, complete genome	489	`_____............__`	500	63
DQ473502.1	Human rhinovirus 76, complete genome	482	`...tgt...........__`	498	73
DQ473502.1	Human rhinovirus 76, complete genome	6777	`________.........._`	6786	52
FJ445182.1	Human rhinovirus 76 strain ATCC VR-1186, complete genome	482	`...tgt...........__`	498	73
FJ445182.1	Human rhinovirus 76 strain ATCC VR-1186, complete genome	6776	`________.........._`	6785	52
FJ445137.1	Human rhinovirus 52 isolate F10, complete genome	1328	`___....tg........._`	1342	68
FJ445151.1	Human rhinovirus 69 strain ATCC VR-1179, complete genome	1324	`___....tg........._`	1338	68
EF173424.1	Human rhinovirus 52, complete genome	500	`______...........__`	510	57
FJ445188.1	Human rhinovirus 52 strain ATCC VR-1162, complete genome	500	`______...........__`	510	57
DQ473507.1	Human rhinovirus 53, complete genome	6445	`________...........`	6455	57
FJ445128.1	Human rhinovirus 33 strain ATCC VR-330, complete genome	487	`_____...........___`	497	57
DQ473503.1	Human rhinovirus 7, complete genome	1958	`___.t.c..g.........`	1943	68
FJ445120.1	Human rhinovirus 20 strain ATCC VR-1130, complete genome	486	`...tgt..........___`	501	68
FJ445176.1	Human rhinovirus 7 strain ATCC VR-1117, complete genome	1958	`___.t.c..g.........`	1943	68
M16248.1	HRV89 Human rhinovirus type 89 (HRV89), complete genome	1533	`.g.g.........._____`	1546	63
M16248.1	HRV89 Human rhinovirus type 89 (HRV89), complete genome	1957	`_______..g.........`	1946	57
FJ445114.1	Human rhinovirus 9 isolate F01, complete genome	2316	`___.c..g.........__`	2329	63
FJ445115.1	Human rhinovirus 9 isolate F02, complete genome	2315	`___.c..g.........__`	2328	63
FJ445165.1	Human rhinovirus 89 isolate F09, complete genome	1531	`.g.g.........._____`	1544	63
FJ445165.1	Human rhinovirus 89 isolate F09, complete genome	1955	`_______..g.........`	1944	57
FJ445165.1	Human rhinovirus 89 isolate F09, complete genome	4992	`______..........___`	4983	52
FJ445166.1	Human rhinovirus 89 isolate F08, complete genome	1533	`.g.g.........._____`	1546	63
FJ445166.1	Human rhinovirus 89 isolate F08, complete genome	1957	`_______..g.........`	1946	57
FJ445166.1	Human rhinovirus 89 isolate F08, complete genome	4994	`______..........___`	4985	52
FJ445184.1	Human rhinovirus 89 strain ATCC VR-1199, complete genome	1533	`.g.g.........._____`	1546	63
FJ445184.1	Human rhinovirus 89 strain ATCC VR-1199, complete genome	1957	`_______..g.........`	1946	57
NC_001617.1	Human rhinovirus 89, complete genome	1533	`.g.g.........._____`	1546	63
NC_001617.1	Human rhinovirus 89, complete genome	1957	`_______..g.........`	1946	57
DQ473486.1	Human rhinovirus 6, complete genome	2562	`..........g._______`	2551	57
DQ473487.1	Human rhinovirus 35, complete genome	5328	`_____.c..........__`	5317	57
FJ445164.1	Human rhinovirus 86 strain ATCC VR-1196, complete genome	1338	`______..........t._`	1349	57
FJ445187.1	Human rhinovirus 35 strain ATCC VR-1145, complete genome	5328	`_____.c..........__`	5317	57
D00239.1	HRVACG Human rhinovirus 1B, complete genome	2330	`_____..a.........__`	2341	57
DQ473491.1	Human rhinovirus 41, complete genome	5255	`_____.c..........__`	5244	57
DQ473499.1	Human rhinovirus 44, complete genome	1948	`_______..g.........`	1937	57
DQ473500.1	Human rhinovirus 59, complete genome	1944	`_______..g.........`	1933	57
DQ473505.1	Human rhinovirus 36, complete genome	1955	`_______..g.........`	1944	57
DQ473505.1	Human rhinovirus 36, complete genome	1678	`___..........______`	1687	52
FJ445116.1	Human rhinovirus 13 strain ATCC VR-1123, complete genome	5252	`_____.c..........__`	5241	57
FJ445123.1	Human rhinovirus 25 strain ATCC VR-1135, complete genome	1948	`_______..g.........`	1937	57
FJ445125.1	Human rhinovirus 29 strain ATCC VR-1139, complete genome	1948	`_______..g.........`	1937	57
FJ445126.1	Human rhinovirus 31 strain ATCC VR-506, complete genome	1944	`_______..g.........`	1933	57
FJ445131.1	Human rhinovirus 43 strain ATCC VR-1153, complete genome	1937	`_______..g.........`	1926	57
FJ445131.1	Human rhinovirus 43 strain ATCC VR-1153, complete genome	4459	`_________..........`	4468	52
FJ445145.1	Human rhinovirus 62 strain ATCC VR-1172, complete genome	1953	`_______..g.........`	1942	57
FJ445146.1	Human rhinovirus 63 strain ATCC VR-1173, complete genome	1951	`_______..g.........`	1940	57
FJ445163.1	Human rhinovirus 85 strain ATCC VR-1195, complete genome	1950	`_______..g.........`	1939	57
EF186077.1	Human rhinovirus QPM polyprotein gene, complete cds	4888	`________.........._`	4879	52
DQ875932.2	Human rhinovirus C strain NY-074 polyprotein gene, complete cds	6370	`_________..........`	6379	52
GU219984.1	Human rhinovirus C strain HRV-C15 isolate W10, complete genome	3164	`.........._________`	3173	52
EF173415.1	Human rhinovirus 12, complete genome	3109	`____.........._____`	3118	52
EF173416.1	Human rhinovirus 24, complete genome	490	`______..........___`	499	52
FJ445190.1	Human rhinovirus 24 strain ATCC VR-1134, complete genome	490	`______..........___`	499	52

VIRsiRNAdb

Database of Viral siRNA / shRNA