../../tmp/servers/virsirnadb/349408177
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1850 | 1 | gtggacagagaaggtctct | 19 | |
| NC_009334.1 | Human herpesvirus 4, complete genome | 170220 | ................... | 170238 | 100 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 44219 | ____...t.........__ | 44231 | 63 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 147106 | ...c.........______ | 147094 | 63 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 166953 | __...........______ | 166943 | 57 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 86826 | .g..g........._____ | 86839 | 63 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 134239 | _____.........c.a.. | 134226 | 63 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 3787 | ___..........c.____ | 3798 | 57 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 13614 | .........._________ | 13605 | 52 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 16684 | .........._________ | 16675 | 52 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 19754 | .........._________ | 19745 | 52 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 22824 | .........._________ | 22815 | 52 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 25894 | .........._________ | 25885 | 52 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 28964 | .........._________ | 28955 | 52 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 32034 | .........._________ | 32025 | 52 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 35104 | .........._________ | 35095 | 52 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 155374 | _______..........__ | 155383 | 52 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 166919 | .........c.gc..____ | 166905 | 63 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 61693 | .........cg..______ | 61681 | 57 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 171394 | .g.........g.______ | 171406 | 57 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 171952 | .g.........g.______ | 171964 | 57 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 172496 | .g.........g.______ | 172508 | 57 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 157220 | _______.........a._ | 157210 | 52 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 12815 | __.........________ | 12807 | 47 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 15885 | __.........________ | 15877 | 47 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 18955 | __.........________ | 18947 | 47 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 22025 | __.........________ | 22017 | 47 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 25095 | __.........________ | 25087 | 47 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 28165 | __.........________ | 28157 | 47 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 31235 | __.........________ | 31227 | 47 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 34305 | __.........________ | 34297 | 47 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 51448 | ______.........____ | 51440 | 47 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 84677 | ________.........__ | 84669 | 47 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 124625 | ___........._______ | 124633 | 47 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 145838 | __________......... | 145846 | 47 |
| NC_009334.1 | Human herpesvirus 4, complete genome | 156607 | _........._________ | 156599 | 47 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 44039 | ____...t.........__ | 44051 | 63 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 86666 | ___.g..........g.t. | 86651 | 68 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 3787 | ___..........c.____ | 3798 | 57 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 13667 | .........._________ | 13658 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 16740 | .........._________ | 16731 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 19813 | .........._________ | 19804 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 22886 | .........._________ | 22877 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 25959 | .........._________ | 25950 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 29032 | .........._________ | 29023 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 32105 | .........._________ | 32096 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 35178 | .........._________ | 35169 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 13281 | .g.........________ | 13271 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 16354 | .g.........________ | 16344 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 19427 | .g.........________ | 19417 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 22500 | .g.........________ | 22490 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 25573 | .g.........________ | 25563 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 28646 | .g.........________ | 28636 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 31719 | .g.........________ | 31709 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 34792 | .g.........________ | 34782 | 52 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 12865 | __.........________ | 12857 | 47 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 15938 | __.........________ | 15930 | 47 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 19011 | __.........________ | 19003 | 47 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 22084 | __.........________ | 22076 | 47 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 25157 | __.........________ | 25149 | 47 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 28230 | __.........________ | 28222 | 47 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 31303 | __.........________ | 31295 | 47 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 34376 | __.........________ | 34368 | 47 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 51267 | ______.........____ | 51259 | 47 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 84506 | ________.........__ | 84498 | 47 |
| AY961628.3 | Human herpesvirus 4 strain GD1, complete genome | 123717 | ___........._______ | 123725 | 47 |