../../tmp/servers/virsirnadb/1826729754
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1234 | 1 | gttgtcaatatgctaaaac | 19 | |
| D00246.1 | KUNCG Kunjin virus gene for polyprotein (C, prM, E, NS1, NS2A, NS2B, N | 112 | .c................. | 130 | 94 |
| AF202541.1 | West Nile virus strain HNY1999 polyprotein (C, prM, E, NS1, NS2a, NS2 | 91 | .c................. | 109 | 94 |
| AF202541.1 | West Nile virus strain HNY1999 polyprotein (C, prM, E, NS1, NS2a, NS2 | 10894 | .g............_____ | 10881 | 68 |
| AF206518.2 | West Nile virus isolate 2741, complete genome | 115 | .c................. | 133 | 94 |
| AF206518.2 | West Nile virus isolate 2741, complete genome | 10918 | .g............_____ | 10905 | 68 |
| AF260967.1 | West Nile virus strain NY99-eqhs, complete genome | 133 | .c................. | 151 | 94 |
| AF260967.1 | West Nile virus strain NY99-eqhs, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AF260968.1 | West Nile virus strain Eg101, complete genome | 133 | .c................. | 151 | 94 |
| AF260968.1 | West Nile virus strain Eg101, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AF260969.1 | West Nile virus strain RO97-50, complete genome | 133 | .c................. | 151 | 94 |
| AF260969.1 | West Nile virus strain RO97-50, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AF196835.2 | West Nile virus strain NY99-flamingo382-99, complete genome | 133 | .c................. | 151 | 94 |
| AF196835.2 | West Nile virus strain NY99-flamingo382-99, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AF317203.1 | West Nile virus VLG-4 polyprotein precursor, gene, complete cds | 101 | .c................. | 119 | 94 |
| AF317203.1 | West Nile virus VLG-4 polyprotein precursor, gene, complete cds | 10904 | .g............_____ | 10891 | 68 |
| AF481864.1 | West Nile virus strain IS-98 STD, complete genome | 133 | .c................. | 151 | 94 |
| AF481864.1 | West Nile virus strain IS-98 STD, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AF404753.1 | West Nile virus isolate WN MD 2000-crow265, complete genome | 133 | .c................. | 151 | 94 |
| AF404753.1 | West Nile virus isolate WN MD 2000-crow265, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AF404754.1 | West Nile virus isolate WN NJ 2000 MQ5488, complete genome | 133 | .c................. | 151 | 94 |
| AF404754.1 | West Nile virus isolate WN NJ 2000 MQ5488, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AF404755.1 | West Nile virus isolate WN NY 2000-grouse3282, complete genome | 133 | .c................. | 151 | 94 |
| AF404755.1 | West Nile virus isolate WN NY 2000-grouse3282, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AF404756.1 | West Nile virus isolate WN NY 2000-crow3356, complete genome | 133 | .c................. | 151 | 94 |
| AF404756.1 | West Nile virus isolate WN NY 2000-crow3356, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AF404757.1 | West Nile virus isolate WN Italy 1998-equine, complete genome | 133 | .c................. | 151 | 94 |
| AF404757.1 | West Nile virus isolate WN Italy 1998-equine, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AF533540.1 | West Nile virus polyprotein precursor, gene, complete cds | 133 | .c................. | 151 | 94 |
| AF533540.1 | West Nile virus polyprotein precursor, gene, complete cds | 10936 | .g............_____ | 10923 | 68 |
| AY262283.1 | West Nile virus isolate KN3829 polyprotein gene, complete cds | 97 | .c................. | 115 | 94 |
| AY262283.1 | West Nile virus isolate KN3829 polyprotein gene, complete cds | 10899 | .g............_____ | 10886 | 68 |
| AY277252.1 | West Nile virus isolate LEIV-Vlg99-27889, complete genome | 133 | .c................. | 151 | 94 |
| AY278441.1 | West Nile virus isolate Ast99-901, complete genome | 133 | .c................. | 151 | 94 |
| AY278441.1 | West Nile virus isolate Ast99-901, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AY278442.1 | West Nile virus isolate LEIV-Vlg00-27924, complete genome | 133 | .c................. | 151 | 94 |
| AY274504.1 | Kunjin virus clone FLSDX polyprotein mRNA, complete cds | 133 | .c................. | 151 | 94 |
| AY274504.1 | Kunjin virus clone FLSDX polyprotein mRNA, complete cds | 10929 | .g............_____ | 10916 | 68 |
| AY274505.1 | Kunjin virus clone pAKUN polyprotein mRNA, complete cds | 133 | .c................. | 151 | 94 |
| AY274505.1 | Kunjin virus clone pAKUN polyprotein mRNA, complete cds | 10929 | .g............_____ | 10916 | 68 |
| AY268132.1 | West Nile virus strain PaAn001 polyprotein (pol) gene, complete cds | 113 | .c................. | 131 | 94 |
| AY268132.1 | West Nile virus strain PaAn001 polyprotein (pol) gene, complete cds | 10916 | .g............_____ | 10903 | 68 |
| AY268133.1 | West Nile virus strain PaH001 polyprotein (pol) gene, complete cds | 113 | .c................. | 131 | 94 |
| AY268133.1 | West Nile virus strain PaH001 polyprotein (pol) gene, complete cds | 10916 | .g............_____ | 10903 | 68 |
| AY289214.1 | West Nile virus strain TVP 8533 complete genome | 133 | .c................. | 151 | 94 |
| AY289214.1 | West Nile virus strain TVP 8533 complete genome | 10936 | .g............_____ | 10923 | 68 |
| AY490240.2 | West Nile virus strain Chin-01, complete genome | 133 | .c................. | 151 | 94 |
| AY490240.2 | West Nile virus strain Chin-01, complete genome | 10935 | .g............_____ | 10922 | 68 |
| AB185916.1 | West Nile virus gene for polyprotein precursor protein, complete cds, | 133 | .c................. | 151 | 94 |
| AB185916.1 | West Nile virus gene for polyprotein precursor protein, complete cds, | 10936 | .g............_____ | 10923 | 68 |
| AB185917.1 | West Nile virus gene for polyprotein precursor protein, complete cds, | 133 | .c................. | 151 | 94 |
| AB185917.1 | West Nile virus gene for polyprotein precursor protein, complete cds, | 10936 | .g............_____ | 10923 | 68 |
| AB185914.2 | West Nile virus gene for polyprotein precursor protein, complete cds, | 133 | .c................. | 151 | 94 |
| AB185914.2 | West Nile virus gene for polyprotein precursor protein, complete cds, | 10936 | .g............_____ | 10923 | 68 |
| AB185915.2 | West Nile virus gene for polyprotein precursor protein, complete cds, | 133 | .c................. | 151 | 94 |
| AB185915.2 | West Nile virus gene for polyprotein precursor protein, complete cds, | 10936 | .g............_____ | 10923 | 68 |
| AY701412.1 | West Nile virus strain 96-111 polyprotein gene, complete cds | 91 | .c................. | 109 | 94 |
| AY701412.1 | West Nile virus strain 96-111 polyprotein gene, complete cds | 10894 | .g............_____ | 10881 | 68 |
| AY701413.1 | West Nile virus strain 04.05 polyprotein gene, complete cds | 91 | .c................. | 109 | 94 |
| AY701413.1 | West Nile virus strain 04.05 polyprotein gene, complete cds | 10894 | .g............_____ | 10881 | 68 |
| AY688948.1 | West Nile virus strain Sarafend, complete genome | 133 | .c................. | 151 | 94 |
| AY688948.1 | West Nile virus strain Sarafend, complete genome | 10964 | .g............_____ | 10951 | 68 |
| AY603654.1 | West Nile virus strain EthAn4766, complete genome | 133 | .c................. | 151 | 94 |
| AY603654.1 | West Nile virus strain EthAn4766, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AY712945.1 | West Nile virus isolate Bird 1153, complete genome | 133 | .c................. | 151 | 94 |
| AY712945.1 | West Nile virus isolate Bird 1153, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AY712946.1 | West Nile virus isolate Bird 1171, complete genome | 133 | .c................. | 151 | 94 |
| AY712946.1 | West Nile virus isolate Bird 1171, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AY712947.1 | West Nile virus isolate Bird 1461, complete genome | 133 | .c................. | 151 | 94 |
| AY712947.1 | West Nile virus isolate Bird 1461, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AY712948.1 | West Nile virus isolate Mosquito v4369, complete genome | 133 | .c................. | 151 | 94 |
| AY712948.1 | West Nile virus isolate Mosquito v4369, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AY646354.1 | West Nile virus from USA, complete genome | 133 | .c................. | 151 | 94 |
| AY646354.1 | West Nile virus from USA, complete genome | 10937 | .g............_____ | 10924 | 68 |
| AY660002.1 | West Nile virus isolate Mex03 from Mexico, complete genome | 133 | .c................. | 151 | 94 |
| AY660002.1 | West Nile virus isolate Mex03 from Mexico, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AY532665.1 | West Nile virus strain B956 polyprotein gene, complete genome | 133 | .c................. | 151 | 94 |
| AY532665.1 | West Nile virus strain B956 polyprotein gene, complete genome | 10945 | .g............_____ | 10932 | 68 |
| AY795965.1 | West Nile virus isolate ARC10, complete genome | 133 | .c................. | 151 | 94 |
| AY795965.1 | West Nile virus isolate ARC10, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ066423.1 | West Nile virus strain 385-99 isolate hamster passage strain 9317B, c | 133 | .c................. | 151 | 94 |
| DQ066423.1 | West Nile virus strain 385-99 isolate hamster passage strain 9317B, c | 10936 | .g............_____ | 10923 | 68 |
| DQ005530.1 | West Nile virus isolate FDA-BSL5-2003, complete genome | 133 | .c................. | 151 | 94 |
| DQ005530.1 | West Nile virus isolate FDA-BSL5-2003, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ080051.1 | West Nile virus isolate A-AZ-03-1623 polyprotein precursor, gene, com | 133 | .c................. | 151 | 94 |
| DQ080051.1 | West Nile virus isolate A-AZ-03-1623 polyprotein precursor, gene, com | 10936 | .g............_____ | 10923 | 68 |
| DQ080052.1 | West Nile virus isolate B-AZ-03-1681 polyprotein precursor, gene, com | 133 | .c................. | 151 | 94 |
| DQ080052.1 | West Nile virus isolate B-AZ-03-1681 polyprotein precursor, gene, com | 10936 | .g............_____ | 10923 | 68 |
| DQ080053.1 | West Nile virus isolate C-AZ-03 03-1799 polyprotein precursor, gene, | 133 | .c................. | 151 | 94 |
| DQ080053.1 | West Nile virus isolate C-AZ-03 03-1799 polyprotein precursor, gene, | 10936 | .g............_____ | 10923 | 68 |
| DQ080054.1 | West Nile virus isolate E-CA-03 GRLA-1260 polyprotein precursor, gene | 133 | .c................. | 151 | 94 |
| DQ080054.1 | West Nile virus isolate E-CA-03 GRLA-1260 polyprotein precursor, gene | 10936 | .g............_____ | 10923 | 68 |
| DQ080055.1 | West Nile virus isolate F-CA-03 IMPR 102 polyprotein precursor, gene, | 133 | .c................. | 151 | 94 |
| DQ080055.1 | West Nile virus isolate F-CA-03 IMPR 102 polyprotein precursor, gene, | 10936 | .g............_____ | 10923 | 68 |
| DQ080056.1 | West Nile virus isolate G-CA-03 IMPR-1075 polyprotein precursor, gene | 133 | .c................. | 151 | 94 |
| DQ080056.1 | West Nile virus isolate G-CA-03 IMPR-1075 polyprotein precursor, gene | 10936 | .g............_____ | 10923 | 68 |
| DQ080057.1 | West Nile virus isolate I-CA-03 Arcadia-S0331532 polyprotein precurso | 133 | .c................. | 151 | 94 |
| DQ080057.1 | West Nile virus isolate I-CA-03 Arcadia-S0331532 polyprotein precurso | 10936 | .g............_____ | 10923 | 68 |
| DQ080058.1 | West Nile virus isolate J-CA-03 Arcadia-S0334814 polyprotein precurso | 133 | .c................. | 151 | 94 |
| DQ080058.1 | West Nile virus isolate J-CA-03 Arcadia-S0334814 polyprotein precurso | 10936 | .g............_____ | 10923 | 68 |
| DQ080059.1 | West Nile virus isolate L-CA-04 SAC-04-7168 polyprotein precursor, ge | 133 | .c................. | 151 | 94 |
| DQ080059.1 | West Nile virus isolate L-CA-04 SAC-04-7168 polyprotein precursor, ge | 10936 | .g............_____ | 10923 | 68 |
| DQ080060.1 | West Nile virus isolate WNVCc polyprotein precursor, gene, complete c | 104 | .c................. | 122 | 94 |
| DQ080060.1 | West Nile virus isolate WNVCc polyprotein precursor, gene, complete c | 10907 | .g............_____ | 10894 | 68 |
| DQ080061.1 | West Nile virus isolate TWN496 polyprotein precursor, gene, complete | 104 | .c................. | 122 | 94 |
| DQ080061.1 | West Nile virus isolate TWN496 polyprotein precursor, gene, complete | 10907 | .g............_____ | 10894 | 68 |
| DQ080062.1 | West Nile virus isolate TWN165 polyprotein precursor, gene, complete | 105 | .c................. | 123 | 94 |
| DQ080062.1 | West Nile virus isolate TWN165 polyprotein precursor, gene, complete | 10908 | .g............_____ | 10895 | 68 |
| DQ080063.1 | West Nile virus isolate TVP9223 polyprotein precursor, gene, complete | 105 | .c................. | 123 | 94 |
| DQ080063.1 | West Nile virus isolate TVP9223 polyprotein precursor, gene, complete | 10908 | .g............_____ | 10895 | 68 |
| DQ080064.1 | West Nile virus isolate TVP9222 polyprotein precursor, gene, complete | 105 | .c................. | 123 | 94 |
| DQ080064.1 | West Nile virus isolate TVP9222 polyprotein precursor, gene, complete | 10908 | .g............_____ | 10895 | 68 |
| DQ080065.1 | West Nile virus isolate TVP9221 polyprotein precursor, gene, complete | 99 | .c................. | 117 | 94 |
| DQ080065.1 | West Nile virus isolate TVP9221 polyprotein precursor, gene, complete | 10902 | .g............_____ | 10889 | 68 |
| DQ080066.1 | West Nile virus isolate TVP9220 polyprotein precursor, gene, complete | 105 | .c................. | 123 | 94 |
| DQ080066.1 | West Nile virus isolate TVP9220 polyprotein precursor, gene, complete | 10908 | .g............_____ | 10895 | 68 |
| DQ080067.1 | West Nile virus isolate TVP9219 polyprotein precursor, gene, complete | 105 | .c................. | 123 | 94 |
| DQ080067.1 | West Nile virus isolate TVP9219 polyprotein precursor, gene, complete | 10908 | .g............_____ | 10895 | 68 |
| DQ080068.1 | West Nile virus isolate TVP9218 polyprotein precursor, gene, complete | 105 | .c................. | 123 | 94 |
| DQ080068.1 | West Nile virus isolate TVP9218 polyprotein precursor, gene, complete | 10908 | .g............_____ | 10895 | 68 |
| DQ080069.1 | West Nile virus isolate TVP9117 polyprotein precursor, gene, complete | 105 | .c................. | 123 | 94 |
| DQ080069.1 | West Nile virus isolate TVP9117 polyprotein precursor, gene, complete | 10908 | .g............_____ | 10895 | 68 |
| DQ080070.1 | West Nile virus isolate TVP9115 polyprotein precursor, gene, complete | 105 | .c................. | 123 | 94 |
| DQ080070.1 | West Nile virus isolate TVP9115 polyprotein precursor, gene, complete | 10908 | .g............_____ | 10895 | 68 |
| DQ080071.1 | West Nile virus isolate FL234 polyprotein precursor, gene, complete c | 104 | .c................. | 122 | 94 |
| DQ080071.1 | West Nile virus isolate FL234 polyprotein precursor, gene, complete c | 10907 | .g............_____ | 10894 | 68 |
| DQ080072.1 | West Nile virus isolate FL232 polyprotein precursor, gene, complete c | 104 | .c................. | 122 | 94 |
| DQ080072.1 | West Nile virus isolate FL232 polyprotein precursor, gene, complete c | 10907 | .g............_____ | 10894 | 68 |
| DQ116961.1 | West Nile virus isolate goshawk-Hungary/04, complete genome | 133 | .c................. | 151 | 94 |
| DQ116961.1 | West Nile virus isolate goshawk-Hungary/04, complete genome | 10957 | .g............_____ | 10944 | 68 |
| AY842931.3 | West Nile virus strain 385-99, complete genome | 133 | .c................. | 151 | 94 |
| AY842931.3 | West Nile virus strain 385-99, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164186.1 | West Nile virus isolate NY 2002 Queens, complete genome | 133 | .c................. | 151 | 94 |
| DQ164186.1 | West Nile virus isolate NY 2002 Queens, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164187.1 | West Nile virus isolate NY 2002 Broome, complete genome | 133 | .c................. | 151 | 94 |
| DQ164187.1 | West Nile virus isolate NY 2002 Broome, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164188.1 | West Nile virus isolate NY 2003 Westchester, complete genome | 133 | .c................. | 151 | 94 |
| DQ164188.1 | West Nile virus isolate NY 2003 Westchester, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164189.1 | West Nile virus isolate NY 2003 Albany, complete genome | 133 | .c................. | 151 | 94 |
| DQ164189.1 | West Nile virus isolate NY 2003 Albany, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164190.1 | West Nile virus isolate NY 2003 Suffolk, complete genome | 133 | .c................. | 151 | 94 |
| DQ164190.1 | West Nile virus isolate NY 2003 Suffolk, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164191.1 | West Nile virus isolate NY 2003 Chautauqua, complete genome | 133 | .c................. | 151 | 94 |
| DQ164191.1 | West Nile virus isolate NY 2003 Chautauqua, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164192.1 | West Nile virus isolate NY 2003 Rockland, complete genome | 133 | .c................. | 151 | 94 |
| DQ164192.1 | West Nile virus isolate NY 2003 Rockland, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164193.1 | West Nile virus isolate NY 2002 Clinton, complete genome | 133 | .c................. | 151 | 94 |
| DQ164193.1 | West Nile virus isolate NY 2002 Clinton, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164194.1 | West Nile virus isolate NY 2001 Suffolk, complete genome | 133 | .c................. | 151 | 94 |
| DQ164194.1 | West Nile virus isolate NY 2001 Suffolk, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164195.1 | West Nile virus isolate NY 2002 Nassau, complete genome | 133 | .c................. | 151 | 94 |
| DQ164195.1 | West Nile virus isolate NY 2002 Nassau, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164196.1 | West Nile virus isolate GA 2002 1, complete genome | 133 | .c................. | 151 | 94 |
| DQ164196.1 | West Nile virus isolate GA 2002 1, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164197.1 | West Nile virus isolate GA 2002 2, complete genome | 133 | .c................. | 151 | 94 |
| DQ164197.1 | West Nile virus isolate GA 2002 2, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164198.1 | West Nile virus isolate TX 2002 1, complete genome | 133 | .c................. | 151 | 94 |
| DQ164198.1 | West Nile virus isolate TX 2002 1, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164199.1 | West Nile virus isolate TX 2003, complete genome | 133 | .c................. | 151 | 94 |
| DQ164199.1 | West Nile virus isolate TX 2003, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164200.1 | West Nile virus isolate IN 2002, complete genome | 133 | .c................. | 151 | 94 |
| DQ164200.1 | West Nile virus isolate IN 2002, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164201.1 | West Nile virus isolate AZ 2004, complete genome | 133 | .c................. | 151 | 94 |
| DQ164201.1 | West Nile virus isolate AZ 2004, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164202.1 | West Nile virus isolate OH 2002, complete genome | 133 | .c................. | 151 | 94 |
| DQ164202.1 | West Nile virus isolate OH 2002, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164203.1 | West Nile virus isolate CO 2003 2, complete genome | 133 | .c................. | 151 | 94 |
| DQ164203.1 | West Nile virus isolate CO 2003 2, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164204.1 | West Nile virus isolate CO 2003 1, complete genome | 133 | .c................. | 151 | 94 |
| DQ164204.1 | West Nile virus isolate CO 2003 1, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164205.1 | West Nile virus isolate TX 2002 2, complete genome | 133 | .c................. | 151 | 94 |
| DQ164205.1 | West Nile virus isolate TX 2002 2, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ164206.1 | West Nile virus isolate TX 2004 Harris 4, complete genome | 133 | .c................. | 151 | 94 |
| DQ164206.1 | West Nile virus isolate TX 2004 Harris 4, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ176637.1 | West Nile virus strain TX 2002-HC, complete genome | 76 | .c................. | 94 | 94 |
| AY848697.2 | West Nile virus strain 385-99 isolate hamster passage strain TVP-9376 | 133 | .c................. | 151 | 94 |
| AY848697.2 | West Nile virus strain 385-99 isolate hamster passage strain TVP-9376 | 10936 | .g............_____ | 10923 | 68 |
| AY848695.2 | West Nile virus strain 385-99 isolate hamster passage strain 9317A, c | 133 | .c................. | 151 | 94 |
| AY848695.2 | West Nile virus strain 385-99 isolate hamster passage strain 9317A, c | 10936 | .g............_____ | 10923 | 68 |
| AY848696.2 | West Nile virus strain 385-99 isolate hamster passage strain 9317E, c | 133 | .c................. | 151 | 94 |
| AY848696.2 | West Nile virus strain 385-99 isolate hamster passage strain 9317E, c | 10936 | .g............_____ | 10923 | 68 |
| DQ318019.1 | West Nile virus strain ArD76104, complete genome | 133 | .c................. | 151 | 94 |
| DQ318019.1 | West Nile virus strain ArD76104, complete genome | 10945 | .g............_____ | 10932 | 68 |
| DQ318020.1 | Wets NIle virus strain ArB3573/82, complete genome | 133 | .c................. | 151 | 94 |
| DQ318020.1 | Wets NIle virus strain ArB3573/82, complete genome | 10955 | .g............_____ | 10942 | 68 |
| DQ374650.1 | West Nile virus isolate Ast02-3-717, complete genome | 110 | .c................. | 128 | 94 |
| DQ374651.1 | West Nile virus isolate Ast02-3-570, complete genome | 110 | .c................. | 128 | 94 |
| DQ374652.1 | West Nile virus isolate Ast04-2-824A,, complete genome | 110 | .c................. | 128 | 94 |
| DQ374653.1 | West Nile virus isolate Ast02-2-25, complete genome | 110 | .c................. | 128 | 94 |
| DQ377178.1 | West Nile virus isolate Ast02-2-26, complete genome | 110 | .c................. | 128 | 94 |
| DQ377179.1 | West Nile virus isolate Ast02-2-298, complete genome | 110 | .c................. | 128 | 94 |
| DQ377180.1 | West Nile virus isolate Ast02-3-208, complete genome | 110 | .c................. | 128 | 94 |
| DQ118127.1 | West Nile virus isolate goose-Hungary/03, complete genome | 133 | .c................. | 151 | 94 |
| DQ118127.1 | West Nile virus isolate goose-Hungary/03, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ411029.1 | West Nile virus isolate Ast01-66, complete genome | 110 | .c................. | 128 | 94 |
| DQ411030.1 | West Nile virus isolate Ast01-182, complete genome | 110 | .c................. | 128 | 94 |
| DQ411031.1 | West Nile virus isolate Ast01-187, complete genome | 110 | .c................. | 128 | 94 |
| DQ411032.1 | West Nile virus isolate Ast02-3-146, complete genome | 110 | .c................. | 128 | 94 |
| DQ411033.1 | West Nile virus isolate Ast02-3-165, complete genome | 110 | .c................. | 128 | 94 |
| DQ411034.1 | West Nile virus isolate Ast02-2-691, complete genome | 110 | .c................. | 128 | 94 |
| DQ411035.1 | West Nile virus isolate Ast02-2-692, complete genome | 110 | .c................. | 128 | 94 |
| DQ431693.1 | West Nile virus isolate 03-20TX polyprotein precursor, gene, complete | 37 | .c................. | 55 | 94 |
| DQ431694.1 | West Nile virus isolate 03-22TX polyprotein precursor, gene, complete | 37 | .c................. | 55 | 94 |
| DQ431695.1 | West Nile virus isolate 03-82IL polyprotein precursor, gene, complete | 37 | .c................. | 55 | 94 |
| DQ431696.1 | West Nile virus isolate 03-104WI polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431697.1 | West Nile virus isolate 03-113FL polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431698.1 | West Nile virus isolate 03-120FL polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431699.1 | West Nile virus isolate 03-124FL polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431700.1 | West Nile virus isolate 04-213CA polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431701.1 | West Nile virus isolate 04-214CO polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431702.1 | West Nile virus isolate 04-216CO polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431703.1 | West Nile virus isolate 04-218CO polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431704.1 | West Nile virus isolate 04-219CO polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431705.1 | West Nile virus isolate 04-233ND polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431705.1 | West Nile virus isolate 04-233ND polyprotein precursor, gene, complet | 10835 | ..g..........._____ | 10822 | 68 |
| DQ431706.1 | West Nile virus isolate 04-236NM polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431706.1 | West Nile virus isolate 04-236NM polyprotein precursor, gene, complet | 10840 | ..g..........._____ | 10827 | 68 |
| DQ431707.1 | West Nile virus isolate 04-237NM polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431708.1 | West Nile virus isolate 04-238CA polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431709.1 | West Nile virus isolate 04-240CA polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431710.1 | West Nile virus isolate 04-244CA polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431710.1 | West Nile virus isolate 04-244CA polyprotein precursor, gene, complet | 10840 | ..g..........._____ | 10827 | 68 |
| DQ431711.1 | West Nile virus isolate 04-251AZ polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ431712.1 | West Nile virus isolate 04-252AZ polyprotein precursor, gene, complet | 37 | .c................. | 55 | 94 |
| DQ786572.1 | West Nile virus isolate France 405/04 polyprotein gene, complete cds | 109 | .c................. | 127 | 94 |
| DQ786572.1 | West Nile virus isolate France 405/04 polyprotein gene, complete cds | 10912 | .g............_____ | 10899 | 68 |
| DQ786573.1 | West Nile virus isolate France 407/04 polyprotein gene, complete cds | 109 | .c................. | 127 | 94 |
| DQ786573.1 | West Nile virus isolate France 407/04 polyprotein gene, complete cds | 10912 | .g............_____ | 10899 | 68 |
| DQ666448.1 | West Nile virus isolate BSL5-2004, complete genome | 133 | .c................. | 151 | 94 |
| DQ666448.1 | West Nile virus isolate BSL5-2004, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ666449.1 | West Nile virus isolate GCTX1-2005, complete genome | 133 | .c................. | 151 | 94 |
| DQ666449.1 | West Nile virus isolate GCTX1-2005, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ666450.1 | West Nile virus isolate GCTX2-2005, complete genome | 133 | .c................. | 151 | 94 |
| DQ666450.1 | West Nile virus isolate GCTX2-2005, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ666451.1 | West Nile virus isolate BSL13-2005, complete genome | 133 | .c................. | 151 | 94 |
| DQ666451.1 | West Nile virus isolate BSL13-2005, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ666452.1 | West Nile virus isolate BSL2-2005, complete genome | 133 | .c................. | 151 | 94 |
| DQ666452.1 | West Nile virus isolate BSL2-2005, complete genome | 10922 | .g............_____ | 10909 | 68 |
| DQ176636.2 | West Nile virus strain Madagascar-AnMg798, complete genome | 132 | .c................. | 150 | 94 |
| CS543188.1 | Sequence 1 from Patent WO2007015783 | 133 | .c................. | 151 | 94 |
| CS543188.1 | Sequence 1 from Patent WO2007015783 | 10936 | .g............_____ | 10923 | 68 |
| CS568914.1 | Sequence 1 from Patent WO2006029300 | 133 | .c................. | 151 | 94 |
| CS568914.1 | Sequence 1 from Patent WO2006029300 | 10936 | .g............_____ | 10923 | 68 |
| CS568916.1 | Sequence 3 from Patent WO2006029300 | 133 | .c................. | 151 | 94 |
| CS568916.1 | Sequence 3 from Patent WO2006029300 | 10936 | .g............_____ | 10923 | 68 |
| CS568917.1 | Sequence 4 from Patent WO2006029300 | 133 | .c................. | 151 | 94 |
| CS568917.1 | Sequence 4 from Patent WO2006029300 | 10936 | .g............_____ | 10923 | 68 |
| CS568918.1 | Sequence 5 from Patent WO2006029300 | 133 | .c................. | 151 | 94 |
| CS568918.1 | Sequence 5 from Patent WO2006029300 | 10936 | .g............_____ | 10923 | 68 |
| CS568919.1 | Sequence 6 from Patent WO2006029300 | 133 | .c................. | 151 | 94 |
| CS568919.1 | Sequence 6 from Patent WO2006029300 | 10936 | .g............_____ | 10923 | 68 |
| EF571854.1 | West Nile virus strain 385-99, complete genome | 133 | .c................. | 151 | 94 |
| EF571854.1 | West Nile virus strain 385-99, complete genome | 10936 | .g............_____ | 10923 | 68 |
| EF429197.1 | West Nile virus SPU116/89, complete genome | 133 | .c................. | 151 | 94 |
| EF429197.1 | West Nile virus SPU116/89, complete genome | 10957 | .g............_____ | 10944 | 68 |
| EF429198.1 | West Nile virus SA93/01, complete genome | 133 | .c................. | 151 | 94 |
| EF429198.1 | West Nile virus SA93/01, complete genome | 10957 | .g............_____ | 10944 | 68 |
| EF429199.1 | West Nile virus SA381/00, complete genome | 133 | .c................. | 151 | 94 |
| EF429199.1 | West Nile virus SA381/00, complete genome | 10957 | .g............_____ | 10944 | 68 |
| EF429200.1 | West Nile virus H442, complete genome | 133 | .c................. | 151 | 94 |
| EF429200.1 | West Nile virus H442, complete genome | 10956 | .g............_____ | 10943 | 68 |
| EU068667.1 | West Nile virus isolate SPU116-89 polyprotein gene, complete cds | 37 | .c................. | 55 | 94 |
| EU081844.1 | West Nile virus strain Egypt 101, complete genome | 133 | .c................. | 151 | 94 |
| EU081844.1 | West Nile virus strain Egypt 101, complete genome | 10936 | .g............_____ | 10923 | 68 |
| EF530047.1 | West Nile virus strain 3356.2.1.1, complete genome | 133 | .c................. | 151 | 94 |
| EF530047.1 | West Nile virus strain 3356.2.1.1, complete genome | 10936 | .g............_____ | 10923 | 68 |
| EF657887.1 | West Nile virus strain 3356K VP2, complete genome | 133 | .c................. | 151 | 94 |
| EF657887.1 | West Nile virus strain 3356K VP2, complete genome | 10936 | .g............_____ | 10923 | 68 |
| EU155484.1 | West Nile virus strain OK03, complete genome | 133 | .c................. | 151 | 94 |
| AM404308.1 | West Nile virus strain PTRoxo complete genome, genomic RNA, strain PT | 108 | .c................. | 126 | 94 |
| AM404308.1 | West Nile virus strain PTRoxo complete genome, genomic RNA, strain PT | 10911 | .g............_____ | 10898 | 68 |
| FJ151394.1 | West Nile virus strain NY99-crow-V76/1, complete genome | 133 | .c................. | 151 | 94 |
| FJ151394.1 | West Nile virus strain NY99-crow-V76/1, complete genome | 10936 | .g............_____ | 10923 | 68 |
| FJ411043.1 | West Nile virus isolate NY99iso-1, complete genome | 133 | .c................. | 151 | 94 |
| FJ411043.1 | West Nile virus isolate NY99iso-1, complete genome | 10936 | .g............_____ | 10923 | 68 |
| FJ425721.1 | West Nile virus isolate Reb_VLG_07_H polyprotein gene, complete cds | 100 | .c................. | 118 | 94 |
| FJ425721.1 | West Nile virus isolate Reb_VLG_07_H polyprotein gene, complete cds | 10924 | .g............_____ | 10911 | 68 |
| FJ483548.1 | West Nile virus strain 15217, complete genome | 133 | .c................. | 151 | 94 |
| FJ483548.1 | West Nile virus strain 15217, complete genome | 10937 | .g............_____ | 10924 | 68 |
| FJ483549.1 | West Nile virus strain 15803, complete genome | 133 | .c................. | 151 | 94 |
| FJ483549.1 | West Nile virus strain 15803, complete genome | 10937 | .g............_____ | 10924 | 68 |
| FJ527738.1 | West Nile virus strain LSU-AR01, complete genome | 133 | .c................. | 151 | 94 |
| FJ527738.1 | West Nile virus strain LSU-AR01, complete genome | 10936 | .g............_____ | 10923 | 68 |
| AJ965626.2 | West Nile virus strain PT6.16 polyprotein, genomic RNA | 108 | .c................. | 126 | 94 |
| AJ965626.2 | West Nile virus strain PT6.16 polyprotein, genomic RNA | 10911 | .g............_____ | 10898 | 68 |
| AJ965628.2 | West Nile virus strain PT5.2 polyprotein, genomic RNA, complete genom | 108 | .c................. | 126 | 94 |
| AJ965628.2 | West Nile virus strain PT5.2 polyprotein, genomic RNA, complete genom | 10909 | .g............_____ | 10896 | 68 |
| GQ379156.1 | West Nile virus strain FL2001 crow 67030, complete genome | 133 | .c................. | 151 | 94 |
| GQ379156.1 | West Nile virus strain FL2001 crow 67030, complete genome | 10936 | .g............_____ | 10923 | 68 |
| GQ379157.1 | West Nile virus strain DB080718-14, complete genome | 133 | .c................. | 151 | 94 |
| GQ379157.1 | West Nile virus strain DB080718-14, complete genome | 10936 | .g............_____ | 10923 | 68 |
| GQ379158.1 | West Nile virus strain ORCO0559-07, complete genome | 133 | .c................. | 151 | 94 |
| GQ379158.1 | West Nile virus strain ORCO0559-07, complete genome | 10936 | .g............_____ | 10923 | 68 |
| GQ379159.1 | West Nile virus strain JPW080813-01, complete genome | 133 | .c................. | 151 | 94 |
| GQ379159.1 | West Nile virus strain JPW080813-01, complete genome | 10936 | .g............_____ | 10923 | 68 |
| GQ379160.1 | West Nile virus strain ArEq001, complete genome | 133 | .c................. | 151 | 94 |
| GQ379160.1 | West Nile virus strain ArEq001, complete genome | 10936 | .g............_____ | 10923 | 68 |
| GQ379161.1 | West Nile virus strain ArEq003, complete genome | 133 | .c................. | 151 | 94 |
| GQ379161.1 | West Nile virus strain ArEq003, complete genome | 10936 | .g............_____ | 10923 | 68 |
| GU011992.2 | West Nile virus strain Ita09, complete genome | 133 | .c................. | 151 | 94 |
| GU011992.2 | West Nile virus strain Ita09, complete genome | 10937 | .g............_____ | 10924 | 68 |
| GU827998.1 | West Nile virus isolate Bird114 polyprotein gene, complete cds | 79 | .c................. | 97 | 94 |
| GU827998.1 | West Nile virus isolate Bird114 polyprotein gene, complete cds | 10882 | .g............_____ | 10869 | 68 |
| GU827999.1 | West Nile virus isolate Bird1576 polyprotein gene, complete cds | 98 | .c................. | 116 | 94 |
| GU827999.1 | West Nile virus isolate Bird1576 polyprotein gene, complete cds | 10901 | .g............_____ | 10888 | 68 |
| GU828000.1 | West Nile virus isolate Bird1175 polyprotein gene, complete cds | 85 | .c................. | 103 | 94 |
| GU828000.1 | West Nile virus isolate Bird1175 polyprotein gene, complete cds | 10888 | .g............_____ | 10875 | 68 |
| GU828001.1 | West Nile virus isolate v4380 polyprotein gene, complete cds | 85 | .c................. | 103 | 94 |
| GU828001.1 | West Nile virus isolate v4380 polyprotein gene, complete cds | 10888 | .g............_____ | 10875 | 68 |
| GU828002.1 | West Nile virus isolate v4095 polyprotein gene, complete cds | 84 | .c................. | 102 | 94 |
| GU828002.1 | West Nile virus isolate v4095 polyprotein gene, complete cds | 10887 | .g............_____ | 10874 | 68 |
| GU828003.1 | West Nile virus isolate Bird1881 polyprotein gene, complete cds | 86 | .c................. | 104 | 94 |
| GU828003.1 | West Nile virus isolate Bird1881 polyprotein gene, complete cds | 10889 | .g............_____ | 10876 | 68 |
| GU828004.1 | West Nile virus isolate Bird1519 polyprotein gene, complete cds | 86 | .c................. | 104 | 94 |
| GU828004.1 | West Nile virus isolate Bird1519 polyprotein gene, complete cds | 10889 | .g............_____ | 10876 | 68 |
| HM488177.1 | West Nile virus isolate WNV-1/US/BID-V4336/2002, complete genome | 133 | .c................. | 151 | 94 |
| HM488178.1 | West Nile virus isolate WNV-1/US/BID-V4337/2002, complete genome | 126 | .c................. | 144 | 94 |
| HM488179.1 | West Nile virus isolate WNV-1/US/BID-V4338/2002, complete genome | 133 | .c................. | 151 | 94 |
| HM488180.1 | West Nile virus isolate WNV-1/US/BID-V4339/2002, complete genome | 134 | .c................. | 152 | 94 |
| HM488181.1 | West Nile virus isolate WNV-1/US/BID-V4340/2002, complete genome | 133 | .c................. | 151 | 94 |
| HM488182.1 | West Nile virus isolate WNV-1/US/BID-V4341/2002, complete genome | 133 | .c................. | 151 | 94 |
| HM488183.1 | West Nile virus isolate WNV-1/US/BID-V4345/2002, complete genome | 133 | .c................. | 151 | 94 |
| HM488184.1 | West Nile virus isolate WNV-1/US/BID-V4346/2002, complete genome | 133 | .c................. | 151 | 94 |
| HM488185.1 | West Nile virus isolate WNV-1/US/BID-V4347/2003, complete genome | 132 | .c................. | 150 | 94 |
| HM488186.1 | West Nile virus isolate WNV-1/US/BID-V4350/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488187.1 | West Nile virus isolate WNV-1/US/BID-V4351/2003, complete genome | 132 | .c................. | 150 | 94 |
| HM488188.1 | West Nile virus isolate WNV-1/US/BID-V4353/2004, complete genome | 133 | .c................. | 151 | 94 |
| HM488189.1 | West Nile virus isolate WNV-1/US/BID-V4367/2004, complete genome | 133 | .c................. | 151 | 94 |
| HM488190.1 | West Nile virus isolate WNV-1/US/BID-V4368/2004, complete genome | 129 | .c................. | 147 | 94 |
| HM488191.1 | West Nile virus isolate WNV-1/US/BID-V4369/2004, complete genome | 133 | .c................. | 151 | 94 |
| HM488192.1 | West Nile virus isolate WNV-1/US/BID-V4371/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM488193.1 | West Nile virus isolate WNV-1/US/BID-V4373/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM488195.1 | West Nile virus isolate WNV-1/US/BID-V4375/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM488194.1 | West Nile virus isolate WNV-1/US/BID-V4374/2005, complete genome | 176 | .c................. | 194 | 94 |
| HM488196.1 | West Nile virus isolate WNV-1/US/BID-V4376/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM488197.1 | West Nile virus isolate WNV-1/US/BID-V4377/2005, complete genome | 132 | .c................. | 150 | 94 |
| HM488198.1 | West Nile virus isolate WNV-1/US/BID-V4378/2005, complete genome | 129 | .c................. | 147 | 94 |
| HM488199.1 | West Nile virus isolate WNV-1/US/BID-V4090/2007, complete genome | 133 | .c................. | 151 | 94 |
| HM488200.1 | West Nile virus isolate WNV-1/US/BID-V4092/2007, complete genome | 132 | .c................. | 150 | 94 |
| HM488201.1 | West Nile virus isolate WNV-1/US/BID-V4093/2007, complete genome | 177 | .c................. | 195 | 94 |
| HM488202.1 | West Nile virus isolate WNV-1/US/BID-V4094/2007, complete genome | 133 | .c................. | 151 | 94 |
| HM488203.1 | West Nile virus isolate WNV-1/US/BID-V4096/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488204.1 | West Nile virus isolate WNV-1/US/BID-V4098/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488205.1 | West Nile virus isolate WNV-1/US/BID-V4099/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488206.1 | West Nile virus isolate WNV-1/US/BID-V4100/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488207.1 | West Nile virus isolate WNV-1/US/BID-V4101/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488208.1 | West Nile virus isolate WNV-1/US/BID-V4204/2002, complete genome | 159 | .c................. | 177 | 94 |
| HM488209.1 | West Nile virus isolate WNV-1/US/BID-V4564/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488210.1 | West Nile virus isolate WNV-1/US/BID-V4565/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488211.1 | West Nile virus isolate WNV-1/US/BID-V4566/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488212.1 | West Nile virus isolate WNV-1/US/BID-V4567/2003, complete genome | 176 | .c................. | 194 | 94 |
| HM488213.1 | West Nile virus isolate WNV-1/US/BID-V4571/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488214.1 | West Nile virus isolate WNV-1/US/BID-V4572/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488215.1 | West Nile virus isolate WNV-1/US/BID-V4573/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488216.1 | West Nile virus isolate WNV-1/US/BID-V4574/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488217.1 | West Nile virus isolate WNV-1/US/BID-V4581/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488218.1 | West Nile virus isolate WNV-1/US/BID-V4583/2003, complete genome | 177 | .c................. | 195 | 94 |
| HM488219.1 | West Nile virus isolate WNV-1/US/BID-V4585/2003, complete genome | 175 | .c................. | 193 | 94 |
| HM488220.1 | West Nile virus isolate WNV-1/US/BID-V4586/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488221.1 | West Nile virus isolate WNV-1/US/BID-V4593/2003, complete genome | 173 | .c................. | 191 | 94 |
| HM488222.1 | West Nile virus isolate WNV-1/US/BID-V4599/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488223.1 | West Nile virus isolate WNV-1/US/BID-V4603/2003, complete genome | 131 | .c................. | 149 | 94 |
| HM488224.1 | West Nile virus isolate WNV-1/US/BID-V4604/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488225.1 | West Nile virus isolate WNV-1/US/BID-V4605/2003, complete genome | 132 | .c................. | 150 | 94 |
| HM488226.1 | West Nile virus isolate WNV-1/US/BID-V4607/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488227.1 | West Nile virus isolate WNV-1/US/BID-V4608/2003, complete genome | 167 | .c................. | 185 | 94 |
| HM488228.1 | West Nile virus isolate WNV-1/US/BID-V4609/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488229.1 | West Nile virus isolate WNV-1/US/BID-V4610/2003, complete genome | 177 | .c................. | 195 | 94 |
| HM488230.1 | West Nile virus isolate WNV-1/US/BID-V4612/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488231.1 | West Nile virus isolate WNV-1/US/BID-V4613/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488232.1 | West Nile virus isolate WNV-1/US/BID-V4614/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488233.1 | West Nile virus isolate WNV-1/US/BID-V4616/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488234.1 | West Nile virus isolate WNV-1/US/BID-V4617/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488235.1 | West Nile virus isolate WNV-1/US/BID-V4619/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488236.1 | West Nile virus isolate WNV-1/US/BID-V4700/2003, complete genome | 124 | .c................. | 142 | 94 |
| HM488237.1 | West Nile virus isolate WNV-1/US/BID-V4622/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488238.1 | West Nile virus isolate WNV-1/US/BID-V4623/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488239.1 | West Nile virus isolate WNV-1/US/BID-V4624/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488240.1 | West Nile virus isolate WNV-1/US/BID-V4627/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488241.1 | West Nile virus isolate WNV-1/US/BID-V4628/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488242.1 | West Nile virus isolate WNV-1/US/BID-V4631/2008, complete genome | 129 | .c................. | 147 | 94 |
| HM488243.1 | West Nile virus isolate WNV-1/US/BID-V4632/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488244.1 | West Nile virus isolate WNV-1/US/BID-V4634/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488246.1 | West Nile virus isolate WNV-1/US/BID-V4689/2001, complete genome | 126 | .c................. | 144 | 94 |
| HM488247.1 | West Nile virus isolate WNV-1/US/BID-V4691/2001, complete genome | 124 | .c................. | 142 | 94 |
| HM488248.1 | West Nile virus isolate WNV-1/US/BID-V4694/2001, complete genome | 124 | .c................. | 142 | 94 |
| HM488249.1 | West Nile virus isolate WNV-1/US/BID-V4696/2001, complete genome | 124 | .c................. | 142 | 94 |
| HM488250.1 | West Nile virus isolate WNV-1/US/BID-V4717/2003, complete genome | 124 | .c................. | 142 | 94 |
| HM488251.1 | West Nile virus isolate WNV-1/US/BID-V4719/2003, complete genome | 124 | .c................. | 142 | 94 |
| HM488252.1 | West Nile virus isolate WNV-1/US/BID-V4805/2005, complete genome | 124 | .c................. | 142 | 94 |
| HM488253.1 | West Nile virus isolate WNV-1/US/BID-V4553/2006, complete genome | 148 | .c................. | 166 | 94 |
| HM488254.1 | West Nile virus isolate WNV-1/US/BID-V4559/2007, complete genome | 133 | .c................. | 151 | 94 |
| HM756648.1 | West Nile virus isolate WNV-1/US/BID-V4205/2002, complete genome | 133 | .c................. | 151 | 94 |
| HM756649.1 | West Nile virus isolate WNV-1/US/BID-V4354/2006, complete genome | 133 | .c................. | 151 | 94 |
| HM756650.1 | West Nile virus isolate WNV-1/US/BID-V4582/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM756651.1 | West Nile virus isolate WNV-1/US/BID-V4584/2003, complete genome | 128 | .c................. | 146 | 94 |
| HM756652.1 | West Nile virus isolate WNV-1/US/BID-V4587/2003, complete genome | 131 | .c................. | 149 | 94 |
| HM756653.1 | West Nile virus isolate WNV-1/US/BID-V4588/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM756654.1 | West Nile virus isolate WNV-1/US/BID-V4598/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM756656.1 | West Nile virus isolate WNV-1/US/BID-V4615/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM756657.1 | West Nile virus isolate WNV-1/US/BID-V4685/2003, complete genome | 124 | .c................. | 142 | 94 |
| HM756658.1 | West Nile virus isolate WNV-1/US/BID-V4686/2003, complete genome | 124 | .c................. | 142 | 94 |
| HM756659.1 | West Nile virus isolate WNV-1/US/BID-V4687/2003, complete genome | 124 | .c................. | 142 | 94 |
| HM756660.1 | West Nile virus isolate WNV-1/US/BID-V4097/2008, complete genome | 130 | .c................. | 148 | 94 |
| HM756661.1 | West Nile virus isolate WNV-1/US/BID-V4692/2001, complete genome | 125 | .c................. | 143 | 94 |
| HM756662.1 | West Nile virus isolate WNV-1/US/BID-V4693/2001, complete genome | 124 | .c................. | 142 | 94 |
| HM756663.1 | West Nile virus isolate WNV-1/US/BID-V4697/2001, complete genome | 124 | .c................. | 142 | 94 |
| HM756664.1 | West Nile virus isolate WNV-1/US/BID-V4701/2002, complete genome | 124 | .c................. | 142 | 94 |
| HM756665.1 | West Nile virus isolate WNV-1/US/BID-V4709/2002, complete genome | 124 | .c................. | 142 | 94 |
| HM756666.1 | West Nile virus isolate WNV-1/US/BID-V4711/2003, complete genome | 126 | .c................. | 144 | 94 |
| HM756667.1 | West Nile virus isolate WNV-1/US/BID-V4712/2003, complete genome | 125 | .c................. | 143 | 94 |
| HM756668.1 | West Nile virus isolate WNV-1/US/BID-V4716/2003, complete genome | 124 | .c................. | 142 | 94 |
| HM756669.1 | West Nile virus isolate WNV-1/US/BID-V4718/2003, complete genome | 124 | .c................. | 142 | 94 |
| HM756670.1 | West Nile virus isolate WNV-1/US/BID-V4720/2003, complete genome | 124 | .c................. | 142 | 94 |
| HM756671.1 | West Nile virus isolate WNV-1/US/BID-V4798/2004, complete genome | 124 | .c................. | 142 | 94 |
| HM756672.1 | West Nile virus isolate WNV-1/US/BID-V4799/2004, complete genome | 124 | .c................. | 142 | 94 |
| HM756673.1 | West Nile virus isolate WNV-1/US/BID-V4801/2004, complete genome | 124 | .c................. | 142 | 94 |
| HM756675.1 | West Nile virus isolate WNV-1/US/BID-V4806/2005, complete genome | 124 | .c................. | 142 | 94 |
| HM756676.1 | West Nile virus isolate WNV-1/US/BID-V4349/2003, complete genome | 132 | .c................. | 150 | 94 |
| HM756677.1 | West Nile virus isolate WNV-1/US/BID-V4530/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM756678.1 | West Nile virus isolate WNV-1/US/BID-V4095/2007, complete genome | 133 | .c................. | 151 | 94 |
| HM488114.1 | West Nile virus isolate WNV-1/US/BID-V4102/2002, complete genome | 133 | .c................. | 151 | 94 |
| HM488114.1 | West Nile virus isolate WNV-1/US/BID-V4102/2002, complete genome | 10927 | .g............_____ | 10914 | 68 |
| HM488115.1 | West Nile virus isolate WNV-1/US/BID-V4103/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM488116.1 | West Nile virus isolate WNV-1/US/BID-V4104/2005, complete genome | 167 | .c................. | 185 | 94 |
| HM488117.1 | West Nile virus isolate WNV-1/US/BID-V4105/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM488118.1 | West Nile virus isolate WNV-1/US/BID-V4107/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM488119.1 | West Nile virus isolate WNV-1/US/BID-V4108/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM488120.1 | West Nile virus isolate WNV-1/US/BID-V4109/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM488121.1 | West Nile virus isolate WNV-1/US/BID-V4110/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM488125.1 | West Nile virus isolate WNV-1/US/BID-V4186/1999, complete genome | 132 | .c................. | 150 | 94 |
| HM488126.1 | West Nile virus isolate WNV-1/US/BID-V4187/1999, complete genome | 133 | .c................. | 151 | 94 |
| HM488127.1 | West Nile virus isolate WNV-1/US/BID-V4188/1999, complete genome | 137 | .c................. | 155 | 94 |
| HM488128.1 | West Nile virus isolate WNV-1/US/BID-V4189/1999, complete genome | 128 | .c................. | 146 | 94 |
| HM488129.1 | West Nile virus isolate WNV-1/US/BID-V4191/2000, complete genome | 133 | .c................. | 151 | 94 |
| HM488130.1 | West Nile virus isolate WNV-1/US/BID-V4192/2000, complete genome | 133 | .c................. | 151 | 94 |
| HM488131.1 | West Nile virus isolate WNV-1/US/BID-V4193/2000, complete genome | 132 | .c................. | 150 | 94 |
| HM488132.1 | West Nile virus isolate WNV-1/US/BID-V4194/2000, complete genome | 133 | .c................. | 151 | 94 |
| HM488133.1 | West Nile virus isolate WNV-1/US/BID-V4195/2001, complete genome | 133 | .c................. | 151 | 94 |
| HM488134.1 | West Nile virus isolate WNV-1/US/BID-V4198/2001, complete genome | 133 | .c................. | 151 | 94 |
| HM488135.1 | West Nile virus isolate WNV-1/US/BID-V4199/2001, complete genome | 133 | .c................. | 151 | 94 |
| HM488136.1 | West Nile virus isolate WNV-1/US/BID-V4200/2001, complete genome | 133 | .c................. | 151 | 94 |
| HM488137.1 | West Nile virus isolate WNV-1/US/BID-V4202/2002, complete genome | 133 | .c................. | 151 | 94 |
| HM488138.1 | West Nile virus isolate WNV-1/US/BID-V4207/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488139.1 | West Nile virus isolate WNV-1/US/BID-V4208/2003, complete genome | 130 | .c................. | 148 | 94 |
| HM488140.1 | West Nile virus isolate WNV-1/US/BID-V4210/2003, complete genome | 133 | .c................. | 151 | 94 |
| HM488141.1 | West Nile virus isolate WNV-1/US/BID-V4212/2003, complete genome | 132 | .c................. | 150 | 94 |
| HM488142.1 | West Nile virus isolate WNV-1/US/BID-V4214/2004, complete genome | 130 | .c................. | 148 | 94 |
| HM488143.1 | West Nile virus isolate WNV-1/US/BID-V4215/2004, complete genome | 133 | .c................. | 151 | 94 |
| HM488144.1 | West Nile virus isolate WNV-1/US/BID-V4216/2004, complete genome | 133 | .c................. | 151 | 94 |
| HM488144.1 | West Nile virus isolate WNV-1/US/BID-V4216/2004, complete genome | 10936 | .g............_____ | 10923 | 68 |
| HM488145.1 | West Nile virus isolate WNV-1/US/BID-V4217/2004, complete genome | 133 | .c................. | 151 | 94 |
| HM488146.1 | West Nile virus isolate WNV-1/US/BID-V4218/2004, complete genome | 133 | .c................. | 151 | 94 |
| HM488147.1 | West Nile virus isolate WNV-1/US/BID-V4219/2004, complete genome | 133 | .c................. | 151 | 94 |
| HM488148.1 | West Nile virus isolate WNV-1/US/BID-V4220/2004, complete genome | 133 | .c................. | 151 | 94 |
| HM488149.1 | West Nile virus isolate WNV-1/US/BID-V4223/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM488150.1 | West Nile virus isolate WNV-1/US/BID-V4224/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM488151.1 | West Nile virus isolate WNV-1/US/BID-V4225/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM488152.1 | West Nile virus isolate WNV-1/US/BID-V4226/2005, complete genome | 133 | .c................. | 151 | 94 |
| HM488153.1 | West Nile virus isolate WNV-1/US/BID-V4227/2005, complete genome | 132 | .c................. | 150 | 94 |
| HM488154.1 | West Nile virus isolate WNV-1/US/BID-V4228/2005, complete genome | 137 | .c................. | 155 | 94 |
| HM488155.1 | West Nile virus isolate WNV-1/US/BID-V4229/2006, complete genome | 133 | .c................. | 151 | 94 |
| HM488156.1 | West Nile virus isolate WNV-1/US/BID-V4230/2006, complete genome | 133 | .c................. | 151 | 94 |
| HM488157.1 | West Nile virus isolate WNV-1/US/BID-V4231/2006, complete genome | 133 | .c................. | 151 | 94 |
| HM488158.1 | West Nile virus isolate WNV-1/US/BID-V4232/2006, complete genome | 132 | .c................. | 150 | 94 |
| HM488159.1 | West Nile virus isolate WNV-1/US/BID-V4233/2006, complete genome | 133 | .c................. | 151 | 94 |
| HM488160.1 | West Nile virus isolate WNV-1/US/BID-V4355/2006, complete genome | 131 | .c................. | 149 | 94 |
| HM488161.1 | West Nile virus isolate WNV-1/US/BID-V4356/2007, complete genome | 133 | .c................. | 151 | 94 |
| HM488162.1 | West Nile virus isolate WNV-1/US/BID-V4357/2007, complete genome | 126 | .c................. | 144 | 94 |
| HM488163.1 | West Nile virus isolate WNV-1/US/BID-V4359/2007, complete genome | 133 | .c................. | 151 | 94 |
| HM488164.1 | West Nile virus isolate WNV-1/US/BID-V4360/2007, complete genome | 133 | .c................. | 151 | 94 |
| HM488165.1 | West Nile virus isolate WNV-1/US/BID-V4361/2007, complete genome | 133 | .c................. | 151 | 94 |
| HM488166.1 | West Nile virus isolate WNV-1/US/BID-V4362/2008, complete genome | 148 | .c................. | 166 | 94 |
| HM488167.1 | West Nile virus isolate WNV-1/US/BID-V4363/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488168.1 | West Nile virus isolate WNV-1/US/BID-V4364/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488169.1 | West Nile virus isolate WNV-1/US/BID-V4365/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488170.1 | West Nile virus isolate WNV-1/US/BID-V4366/2008, complete genome | 133 | .c................. | 151 | 94 |
| HM488171.1 | West Nile virus isolate WNV-1/US/BID-V4560/2003, complete genome | 134 | .c................. | 152 | 94 |
| HM488172.1 | West Nile virus isolate WNV-1/US/BID-V4561/2003, complete genome | 175 | .c................. | 193 | 94 |
| HM488173.1 | West Nile virus isolate WNV-1/US/BID-V4562/2003, complete genome | 178 | .c................. | 196 | 94 |
| HM488174.1 | West Nile virus isolate WNV-1/US/BID-V4563/2003, complete genome | 175 | .c................. | 193 | 94 |
| HM488175.1 | West Nile virus isolate WNV-1/US/BID-V4569/2003, complete genome | 176 | .c................. | 194 | 94 |
| HM488176.1 | West Nile virus isolate WNV-1/US/BID-V4575/2003, complete genome | 177 | .c................. | 195 | 94 |
| HM488122.1 | West Nile virus isolate WNV-1/CTFS/BID-V4111/2006, complete genome | 129 | .c................. | 147 | 94 |
| HM488123.1 | West Nile virus isolate WNV-1/CTFS/BID-V4112/2006, complete genome | 132 | .c................. | 150 | 94 |
| HM488124.1 | West Nile virus isolate WNV-1/CTFS/BID-V4113/2006, complete genome | 133 | .c................. | 151 | 94 |
| HM051416.1 | West Nile virus isolate twn9, complete genome | 133 | .c................. | 151 | 94 |
| HM051416.1 | West Nile virus isolate twn9, complete genome | 10936 | .g............_____ | 10923 | 68 |
| HQ596519.1 | West Nile virus strain New York 99 isolate 4132, complete genome | 133 | .c................. | 151 | 94 |
| HQ596519.1 | West Nile virus strain New York 99 isolate 4132, complete genome | 10936 | .g............_____ | 10923 | 68 |
| HQ671696.1 | West Nile virus isolate WNV-1/US/BID-V4196/2001, complete genome | 133 | .c................. | 151 | 94 |
| HQ671697.1 | West Nile virus isolate WNV-1/US/BID-V4197/2001, complete genome | 133 | .c................. | 151 | 94 |
| HQ671698.1 | West Nile virus isolate WNV-1/US/BID-V4203/2002, complete genome | 133 | .c................. | 151 | 94 |
| HQ671699.1 | West Nile virus isolate WNV-1/US/BID-V4206/2002, complete genome | 165 | .c................. | 183 | 94 |
| HQ671700.1 | West Nile virus isolate WNV-1/US/BID-V4576/2003, complete genome | 176 | .c................. | 194 | 94 |
| HQ671701.1 | West Nile virus isolate WNV-1/US/BID-V4590/2003, complete genome | 128 | .c................. | 146 | 94 |
| HQ671702.1 | West Nile virus isolate WNV-1/US/BID-V4595/2003, complete genome | 173 | .c................. | 191 | 94 |
| HQ671703.1 | West Nile virus isolate WNV-1/US/BID-V4611/2003, complete genome | 124 | .c................. | 142 | 94 |
| HQ671704.1 | West Nile virus isolate WNV-1/US/BID-V4618/2003, complete genome | 133 | .c................. | 151 | 94 |
| HQ671705.1 | West Nile virus isolate WNV-1/US/BID-V4620/2003, complete genome | 124 | .c................. | 142 | 94 |
| HQ671706.1 | West Nile virus isolate WNV-1/US/BID-V4898/1999, complete genome | 125 | .c................. | 143 | 94 |
| HQ671707.1 | West Nile virus isolate WNV-1/US/BID-V4899/1999, complete genome | 124 | .c................. | 142 | 94 |
| HQ671708.1 | West Nile virus isolate WNV-1/US/BID-V4900/2000, complete genome | 124 | .c................. | 142 | 94 |
| HQ671709.1 | West Nile virus isolate WNV-1/US/BID-V4901/2000, complete genome | 124 | .c................. | 142 | 94 |
| HQ671710.1 | West Nile virus isolate WNV-1/US/BID-V4902/2000, complete genome | 124 | .c................. | 142 | 94 |
| HQ671711.1 | West Nile virus isolate WNV-1/US/BID-V4903/2000, complete genome | 124 | .c................. | 142 | 94 |
| HQ671712.1 | West Nile virus isolate WNV-1/US/BID-V4904/2000, complete genome | 124 | .c................. | 142 | 94 |
| HQ671713.1 | West Nile virus isolate WNV-1/US/BID-V4905/2001, complete genome | 124 | .c................. | 142 | 94 |
| HQ671714.1 | West Nile virus isolate WNV-1/US/BID-V4906/2001, complete genome | 124 | .c................. | 142 | 94 |
| HQ671715.1 | West Nile virus isolate WNV-1/US/BID-V4908/2001, complete genome | 124 | .c................. | 142 | 94 |
| HQ671716.1 | West Nile virus isolate WNV-1/US/BID-V4909/2001, complete genome | 124 | .c................. | 142 | 94 |
| HQ671717.1 | West Nile virus isolate WNV-1/US/BID-V4910/2001, complete genome | 125 | .c................. | 143 | 94 |
| HQ671718.1 | West Nile virus isolate WNV-1/US/BID-V4911/2001, complete genome | 124 | .c................. | 142 | 94 |
| HQ671719.1 | West Nile virus isolate WNV-1/US/BID-V4912/2001, complete genome | 124 | .c................. | 142 | 94 |
| HQ671720.1 | West Nile virus isolate WNV-1/US/BID-V4913/2002, complete genome | 124 | .c................. | 142 | 94 |
| HQ671721.1 | West Nile virus isolate WNV-1/US/BID-V4625/2008, complete genome | 133 | .c................. | 151 | 94 |
| HQ671722.1 | West Nile virus isolate WNV-1/US/BID-V4704/2002, complete genome | 124 | .c................. | 142 | 94 |
| HQ671723.1 | West Nile virus isolate WNV-1/US/BID-V4715/2003, complete genome | 124 | .c................. | 142 | 94 |
| HQ671724.1 | West Nile virus isolate WNV-1/US/BID-V4883/2005, complete genome | 124 | .c................. | 142 | 94 |
| HQ671725.1 | West Nile virus isolate WNV-1/US/BID-V4885/2005, complete genome | 124 | .c................. | 142 | 94 |
| HQ671726.1 | West Nile virus isolate WNV-1/US/BID-V4887/2005, complete genome | 124 | .c................. | 142 | 94 |
| HQ671727.1 | West Nile virus isolate WNV-1/US/BID-V4889/2006, complete genome | 64 | .c................. | 82 | 94 |
| HQ671728.1 | West Nile virus isolate WNV-1/US/BID-V4891/2006, complete genome | 124 | .c................. | 142 | 94 |
| HQ671729.1 | West Nile virus isolate WNV-1/US/BID-V4892/2006, complete genome | 124 | .c................. | 142 | 94 |
| HQ671730.1 | West Nile virus isolate WNV-1/US/BID-V4897/2007, complete genome | 124 | .c................. | 142 | 94 |
| HQ705659.1 | West Nile virus isolate WNV-1/US/BID-V4209/2003, complete genome | 44 | .c................. | 62 | 94 |
| HQ705660.1 | West Nile virus isolate WNV-1/US/BID-V4714/2003, complete genome | 123 | .c................. | 141 | 94 |
| HQ705669.1 | West Nile virus isolate WNV-1/US/BID-V4342/2002, complete genome | 133 | .c................. | 151 | 94 |
| HQ671668.1 | West Nile virus isolate WNV-1/Mus/BID-V4728/spleen, complete genome | 133 | .c................. | 151 | 94 |
| HQ671669.1 | West Nile virus isolate WNV-1/Mus/BID-V4730/spleen, complete genome | 175 | .c................. | 193 | 94 |
| HQ671670.1 | West Nile virus isolate WNV-1/Mus/BID-V4731/spleen, complete genome | 177 | .c................. | 195 | 94 |
| HQ671671.1 | West Nile virus isolate WNV-1/Mus/BID-V4920/spleen, complete genome | 125 | .c................. | 143 | 94 |
| HQ671672.1 | West Nile virus isolate WNV-1/Mus/BID-V4921/spleen, complete genome | 124 | .c................. | 142 | 94 |
| HQ671673.1 | West Nile virus isolate WNV-1/Mus/BID-V4924/spleen, complete genome | 125 | .c................. | 143 | 94 |
| HQ671674.1 | West Nile virus isolate WNV-1/Mus/BID-V4925/spleen, complete genome | 124 | .c................. | 142 | 94 |
| HQ671675.1 | West Nile virus isolate WNV-1/Mus/BID-V4926/spleen, complete genome | 124 | .c................. | 142 | 94 |
| HQ671676.1 | West Nile virus isolate WNV-1/Mus/BID-V4937/spleen, complete genome | 123 | .c................. | 141 | 94 |
| HQ671677.1 | West Nile virus isolate WNV-1/Mus/BID-V4938/spleen, complete genome | 132 | .c................. | 150 | 94 |
| HQ671678.1 | West Nile virus isolate WNV-1/Mus/BID-V4940/spleen, complete genome | 134 | .c................. | 152 | 94 |
| HQ671679.1 | West Nile virus isolate WNV-1/Mus/BID-V4969/serum, complete genome | 100 | .c................. | 118 | 94 |
| HQ671680.1 | West Nile virus isolate WNV-1/Mus/BID-V4981/serum, complete genome | 100 | .c................. | 118 | 94 |
| HQ671681.1 | West Nile virus isolate WNV-1/Mus/BID-V4985/spleen, complete genome | 123 | .c................. | 141 | 94 |
| HQ671682.1 | West Nile virus isolate WNV-1/Mus/BID-V4986/spleen, complete genome | 115 | .c................. | 133 | 94 |
| HQ671683.1 | West Nile virus isolate WNV-1/Mus/BID-V5006/brain, complete genome | 100 | .c................. | 118 | 94 |
| HQ671684.1 | West Nile virus isolate WNV-1/Mus/BID-V5007/brain, complete genome | 100 | .c................. | 118 | 94 |
| HQ671685.1 | West Nile virus isolate WNV-1/Mus/BID-V5008/brain, complete genome | 100 | .c................. | 118 | 94 |
| HQ671686.1 | West Nile virus isolate WNV-1/Mus/BID-V5017/brain, complete genome | 100 | .c................. | 118 | 94 |
| HQ671687.1 | West Nile virus isolate WNV-1/Culex/BID-V4161/legs, complete genome | 134 | .c................. | 152 | 94 |
| HQ671688.1 | West Nile virus isolate WNV-1/Culex/BID-V4165/legs, complete genome | 132 | .c................. | 150 | 94 |
| HQ671689.1 | West Nile virus isolate WNV-1/Culex/BID-V4174/legs, complete genome | 132 | .c................. | 150 | 94 |
| HQ671690.1 | West Nile virus isolate WNV-1/Culex/BID-V4180/midgut, complete genome | 117 | .c................. | 135 | 94 |
| HQ671691.1 | West Nile virus isolate WNV-1/Gallus/BID-V4958/kidney, complete genom | 153 | .c................. | 171 | 94 |
| HQ671692.1 | West Nile virus isolate WNV-1/Gallus/BID-V4959/kidney, complete genom | 136 | .c................. | 154 | 94 |
| HQ671693.1 | West Nile virus isolate WNV-1/Gallus/BID-V4961/kidney, complete genom | 125 | .c................. | 143 | 94 |
| HQ671694.1 | West Nile virus isolate WNV-1/Gallus/BID-V4963/kidney, complete genom | 124 | .c................. | 142 | 94 |
| HQ671695.1 | West Nile virus isolate WNV-1/Gallus/BID-V5112/skin, complete genome | 100 | .c................. | 118 | 94 |
| HQ671731.1 | West Nile virus isolate WNV-1/Culex/BID-V4171/midgut, complete genome | 133 | .c................. | 151 | 94 |
| HQ671732.1 | West Nile virus isolate WNV-1/Mus/BID-V5000/brain, complete genome | 107 | .c................. | 125 | 94 |
| HQ671733.1 | West Nile virus isolate WNV-1/Mus/BID-V5004/brain, complete genome | 100 | .c................. | 118 | 94 |
| HQ705663.1 | West Nile virus isolate WNV-1/Mus/BID-V4936/spleen, complete genome | 124 | .c................. | 142 | 94 |
| HQ705670.1 | West Nile virus isolate WNV-1/Culex/BID-V4163/legs, complete genome | 133 | .c................. | 151 | 94 |
| HQ705671.1 | West Nile virus isolate WNV-1/Culex/BID-V4166/midgut, complete genome | 133 | .c................. | 151 | 94 |
| HQ705672.1 | West Nile virus isolate WNV-1/Culex/BID-V4168/legs, complete genome | 133 | .c................. | 151 | 94 |
| HQ705673.1 | West Nile virus isolate WNV-1/Culex/BID-V4169/midgut, complete genome | 133 | .c................. | 151 | 94 |
| HQ705674.1 | West Nile virus isolate WNV-1/Culex/BID-V4173/midgut, complete genome | 133 | .c................. | 151 | 94 |
| HQ705675.1 | West Nile virus isolate WNV-1/Culex/BID-V4184/legs, complete genome | 133 | .c................. | 151 | 94 |
| HQ705676.1 | West Nile virus isolate WNV-1/Mus/BID-V4971/serum, complete genome | 99 | .c................. | 117 | 94 |
| HQ705677.1 | West Nile virus isolate WNV-1/Gallus/BID-V4960/kidney, complete genom | 124 | .c................. | 142 | 94 |
| HQ705678.1 | West Nile virus isolate WNV-1/Gallus/BID-V4962/kidney, complete genom | 125 | .c................. | 143 | 94 |
| HQ891009.1 | West Nile virus isolate WNV-1/Mus/BID-V4980/serum, complete genome | 100 | .c................. | 118 | 94 |
| HQ891010.1 | West Nile virus isolate WNV-1/Mus/BID-V4987/spleen, complete genome | 100 | .c................. | 118 | 94 |
| HQ891011.1 | West Nile virus isolate WNV-1/Mus/BID-V4993/brain, complete genome | 100 | .c................. | 118 | 94 |
| HQ891012.1 | West Nile virus isolate WNV-1/Mus/BID-V5118/serum, complete genome | 100 | .c................. | 118 | 94 |
| HQ891013.1 | West Nile virus isolate WNV-1/Mus/BID-V5122/serum, complete genome | 100 | .c................. | 118 | 94 |
| JF357958.1 | West Nile virus isolate WNV-1/Mus/BID-V4997/brain, complete genome | 129 | .c................. | 147 | 94 |
| JF357959.1 | West Nile virus isolate WNV-1/Mus/BID-V4999/brain, complete genome | 133 | .c................. | 151 | 94 |
| JF357960.1 | West Nile virus isolate WNV-1/Gallus/BID-V5109/skin, complete genome | 133 | .c................. | 151 | 94 |
| HM147822.1 | West Nile virus from South Africa, complete genome | 133 | .c................. | 151 | 94 |
| HM147822.1 | West Nile virus from South Africa, complete genome | 10972 | .g............_____ | 10959 | 68 |
| HM147823.1 | West Nile virus from Madagascar, complete genome | 133 | .c................. | 151 | 94 |
| HM147823.1 | West Nile virus from Madagascar, complete genome | 10958 | .g............_____ | 10945 | 68 |
| HM147824.1 | West Nile virus from Democratic Republic of the Congo, complete genom | 133 | .c................. | 151 | 94 |
| HM147824.1 | West Nile virus from Democratic Republic of the Congo, complete genom | 10957 | .g............_____ | 10944 | 68 |
| JF488086.1 | West Nile virus isolate WNV-1/US/BID-V5176/2004, complete genome | 133 | .c................. | 151 | 94 |
| JF488087.1 | West Nile virus isolate WNV-1/US/BID-V5177/2004, complete genome | 133 | .c................. | 151 | 94 |
| JF488088.1 | West Nile virus isolate WNV-1/US/BID-V5178/2004, complete genome | 133 | .c................. | 151 | 94 |
| JF488089.1 | West Nile virus isolate WNV-1/US/BID-V5179/2004, complete genome | 133 | .c................. | 151 | 94 |
| JF488090.1 | West Nile virus isolate WNV-1/US/BID-V5180/2004, complete genome | 146 | .c................. | 164 | 94 |
| JF488091.1 | West Nile virus isolate WNV-1/US/BID-V5181/2004, complete genome | 133 | .c................. | 151 | 94 |
| JF488092.1 | West Nile virus isolate WNV-1/US/BID-V5182/2004, complete genome | 133 | .c................. | 151 | 94 |
| JF488093.1 | West Nile virus isolate WNV-1/US/BID-V5188/2005, complete genome | 133 | .c................. | 151 | 94 |
| JF488093.1 | West Nile virus isolate WNV-1/US/BID-V5188/2005, complete genome | 10938 | .g............_____ | 10925 | 68 |
| JF488094.1 | West Nile virus isolate WNV-1/US/BID-V5150/2004, complete genome | 133 | .c................. | 151 | 94 |
| JF488095.1 | West Nile virus isolate WNV-1/US/BID-V5157/2009, complete genome | 133 | .c................. | 151 | 94 |
| JF488096.1 | West Nile virus isolate WNV-1/US/BID-V5159/2009, complete genome | 133 | .c................. | 151 | 94 |
| JF488097.1 | West Nile virus isolate WNV-1/US/BID-V5148/2007, complete genome | 133 | .c................. | 151 | 94 |
| JF730040.1 | West Nile virus isolate WNV-1/Mus/BID-V4982/serum, complete genome | 100 | .c................. | 118 | 94 |
| JF730042.1 | West Nile virus isolate WNV-1/US/BID-V5147/2007, complete genome | 133 | .c................. | 151 | 94 |
| JF730043.1 | West Nile virus isolate WNV-1/US/BID-V5170/2002, complete genome | 133 | .c................. | 151 | 94 |
| JF784158.1 | West Nile virus isolate WNV-1/Mus/BID-V4974/serum, complete genome | 133 | .c................. | 151 | 94 |
| HQ537483.1 | West Nile virus isolate Nea Santa-Greece-2010, complete genome | 133 | .c................. | 151 | 94 |
| HQ537483.1 | West Nile virus isolate Nea Santa-Greece-2010, complete genome | 10957 | .g............_____ | 10944 | 68 |
| JF730041.1 | West Nile virus isolate WNV-1/Mus/BID-V4729/spleen, complete genome | 133 | .c................. | 151 | 94 |
| JF899528.1 | West Nile virus isolate WNV-1/US/BID-V4800/2004, complete genome | 124 | .c................. | 142 | 94 |
| JF899529.1 | West Nile virus isolate WNV-1/US/BID-V4808/2005, complete genome | 124 | .c................. | 142 | 94 |
| JF899530.1 | West Nile virus isolate WNV-1/Mus/BID-V4923/spleen, complete genome | 124 | .c................. | 142 | 94 |
| JF899531.1 | West Nile virus isolate WNV-1/Mus/BID-V4979/serum, complete genome | 134 | .c................. | 152 | 94 |
| JF899532.1 | West Nile virus isolate WNV-1/Mus/BID-V4992/brain, complete genome | 133 | .c................. | 151 | 94 |
| JF899533.1 | West Nile virus isolate WNV-1/Mus/BID-V4996/brain, complete genome | 142 | .c................. | 160 | 94 |
| JF899534.1 | West Nile virus isolate WNV-1/Mus/BID-V5002/brain, complete genome | 133 | .c................. | 151 | 94 |
| JF899535.1 | West Nile virus isolate WNV-1/Mus/BID-V5142/brain, complete genome | 100 | .c................. | 118 | 94 |
| JF899536.1 | West Nile virus isolate WNV-1/Mus/BID-V5145/brain, complete genome | 112 | .c................. | 130 | 94 |
| JF899537.1 | West Nile virus isolate WNV-1/Mus/BID-V5146/brain, complete genome | 133 | .c................. | 151 | 94 |
| JF920306.1 | West Nile virus isolate WNV-1/US/BID-V4597/2003, complete genome | 167 | .c................. | 185 | 94 |
| JF920307.1 | West Nile virus isolate WNV-1/US/BID-V4907/2001, complete genome | 124 | .c................. | 142 | 94 |
| JF920728.1 | West Nile virus isolate WNV-1/US/BID-V4568/2003, complete genome | 133 | .c................. | 151 | 94 |
| JF920729.1 | West Nile virus isolate WNV-1/US/BID-V5196/2006, complete genome | 133 | .c................. | 151 | 94 |
| JF920730.1 | West Nile virus isolate WNV-1/US/BID-V5197/2006, complete genome | 132 | .c................. | 150 | 94 |
| JF920731.1 | West Nile virus isolate WNV-1/US/BID-V5201/2006, complete genome | 132 | .c................. | 150 | 94 |
| JF920732.1 | West Nile virus isolate WNV-1/US/BID-V5202/2006, complete genome | 133 | .c................. | 151 | 94 |
| JF920734.1 | West Nile virus isolate WNV-1/US/BID-V5204/2006, complete genome | 133 | .c................. | 151 | 94 |
| JF920735.1 | West Nile virus isolate WNV-1/US/BID-V5205/2006, complete genome | 132 | .c................. | 150 | 94 |
| JF920736.1 | West Nile virus isolate WNV-1/US/BID-V5206/2006, complete genome | 133 | .c................. | 151 | 94 |
| JF920737.1 | West Nile virus isolate WNV-1/US/BID-V5207/2006, complete genome | 133 | .c................. | 151 | 94 |
| JF920738.1 | West Nile virus isolate WNV-1/US/BID-V5208/2007, complete genome | 132 | .c................. | 150 | 94 |
| JF920739.1 | West Nile virus isolate WNV-1/US/BID-V5209/2007, complete genome | 133 | .c................. | 151 | 94 |
| JF920740.1 | West Nile virus isolate WNV-1/US/BID-V5210/2007, complete genome | 133 | .c................. | 151 | 94 |
| JF920741.1 | West Nile virus isolate WNV-1/US/BID-V5212/2007, complete genome | 133 | .c................. | 151 | 94 |
| JF920742.1 | West Nile virus isolate WNV-1/US/BID-V5213/2007, complete genome | 133 | .c................. | 151 | 94 |
| JF920743.1 | West Nile virus isolate WNV-1/US/BID-V5214/2007, complete genome | 133 | .c................. | 151 | 94 |
| JF920744.1 | West Nile virus isolate WNV-1/US/BID-V5215/2007, complete genome | 133 | .c................. | 151 | 94 |
| JF920745.1 | West Nile virus isolate WNV-1/US/BID-V5216/2007, complete genome | 133 | .c................. | 151 | 94 |
| JF920746.1 | West Nile virus isolate WNV-1/US/BID-V5217/2007, complete genome | 133 | .c................. | 151 | 94 |
| JF920747.1 | West Nile virus isolate WNV-1/US/BID-V5218/2008, complete genome | 133 | .c................. | 151 | 94 |
| JF920748.1 | West Nile virus isolate WNV-1/US/BID-V5219/2008, complete genome | 133 | .c................. | 151 | 94 |
| JF920749.1 | West Nile virus isolate WNV-1/US/BID-V5220/2008, complete genome | 133 | .c................. | 151 | 94 |
| JF920750.1 | West Nile virus isolate WNV-1/US/BID-V5222/2008, complete genome | 133 | .c................. | 151 | 94 |
| JF920751.1 | West Nile virus isolate WNV-1/US/BID-V5223/2008, complete genome | 133 | .c................. | 151 | 94 |
| JF920752.1 | West Nile virus isolate WNV-1/US/BID-V5224/2008, complete genome | 133 | .c................. | 151 | 94 |
| JF920753.1 | West Nile virus isolate WNV-1/US/BID-V5225/2008, complete genome | 133 | .c................. | 151 | 94 |
| JF920754.1 | West Nile virus isolate WNV-1/US/BID-V5226/2008, complete genome | 133 | .c................. | 151 | 94 |
| JF920755.1 | West Nile virus isolate WNV-1/US/BID-V5227/2008, complete genome | 133 | .c................. | 151 | 94 |
| JF920756.1 | West Nile virus isolate WNV-1/US/BID-V5229/2008, complete genome | 133 | .c................. | 151 | 94 |
| JF920757.1 | West Nile virus isolate WNV-1/US/BID-V5230/2008, complete genome | 133 | .c................. | 151 | 94 |
| JF920758.1 | West Nile virus isolate WNV-1/US/BID-V5233/2009, complete genome | 133 | .c................. | 151 | 94 |
| JF920759.1 | West Nile virus isolate WNV-1/US/BID-V5234/2009, complete genome | 127 | .c................. | 145 | 94 |
| JF920760.1 | West Nile virus isolate WNV-1/US/BID-V5235/2009, complete genome | 133 | .c................. | 151 | 94 |
| HQ671742.1 | West Nile virus isolate WNV-1/US/BID-V4343/2002, complete genome | 133 | .c................. | 151 | 94 |
| JF972636.1 | West Nile virus isolate WNV-1/US/BID-V5228/2008, complete genome | 133 | .c................. | 151 | 94 |
| M12294.2 | WNFCG West Nile virus RNA, complete genome | 133 | .c................. | 151 | 94 |
| M12294.2 | WNFCG West Nile virus RNA, complete genome | 10869 | .g............_____ | 10856 | 68 |
| DQ211652.1 | West Nile virus strain NY99, complete genome | 133 | .c................. | 151 | 94 |
| DQ211652.1 | West Nile virus strain NY99, complete genome | 10936 | .g............_____ | 10923 | 68 |
| DQ256376.1 | West Nile virus strain 804994, complete genome | 136 | ___................ | 151 | 84 |
| DQ256376.1 | West Nile virus strain 804994, complete genome | 10921 | .g............_____ | 10908 | 68 |
| HM488245.1 | West Nile virus isolate WNV-1/US/BID-V4635/2008, complete genome | 136 | ___................ | 151 | 84 |
| AY277251.1 | West Nile virus isolate LEIV-Krnd88-190, complete genome | 128 | .c...........a..... | 146 | 89 |
| AY765264.1 | West Nile virus strain Rabensburg isolate 97-103, complete genome | 133 | .c...........a..... | 151 | 89 |
| AY765264.1 | West Nile virus strain Rabensburg isolate 97-103, complete genome | 10877 | .g............_____ | 10864 | 68 |
| DQ983578.1 | West Nile virus strain FLO3-FL2-3, partial genome | 113 | .c...............g. | 131 | 89 |
| DQ983578.1 | West Nile virus strain FLO3-FL2-3, partial genome | 10916 | .g............_____ | 10903 | 68 |
| FJ159129.1 | West Nile virus isolate 101_5-06-Uu, complete genome | 100 | .c...........a..... | 118 | 89 |
| FJ159129.1 | West Nile virus isolate 101_5-06-Uu, complete genome | 10777 | .g............_____ | 10764 | 68 |
| FJ159130.1 | West Nile virus isolate 5_50-05-Uu, complete genome | 100 | .c...........a..... | 118 | 89 |
| FJ159130.1 | West Nile virus isolate 5_50-05-Uu, complete genome | 10777 | .g............_____ | 10764 | 68 |
| FJ159131.1 | West Nile virus isolate 8_1-05-Uu, complete genome | 100 | .c...........a..... | 118 | 89 |
| FJ159131.1 | West Nile virus isolate 8_1-05-Uu, complete genome | 10777 | .g............_____ | 10764 | 68 |
| JF920733.1 | West Nile virus isolate WNV-1/US/BID-V5203/2006, complete genome | 133 | .c...........a..... | 151 | 89 |